Guide to the Human Genome
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Name: LOC100294350 Sequence: fasta or formatted (188aa) NCBI GI: 239750462
Description:

PREDICTED: similar to hCG2033802

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         13           1
 C cysteine           19.1         36           2
 D aspartate           5.3         10           1
 E glutamate           3.2          6           1
 F phenylalanine       0.5          1           1
 G glycine             3.7          7           2
 H histidine           4.3          8           1
 I isoleucine          1.6          3           1
 K lysine              2.1          4           1
 L leucine             6.4         12           2
 M methionine          7.4         14           1
 N asparagine          1.6          3           2
 P proline             2.7          5           2
 Q glutamine           2.1          4           1
 R arginine            5.9         11           1
 S serine              5.3         10           2
 T threonine           6.9         13           1
 V valine             11.7         22           1
 W tryptophan          1.1          2           1
 Y tyrosine            2.1          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG2033802 
LOC100134353          0.122   PREDICTED: hypothetical protein 
LOC100293155          0.087   PREDICTED: hypothetical protein 
LOC100134576          0.085   PREDICTED: hypothetical protein 
LOC100134279          0.085   PREDICTED: hypothetical protein, partial 
LOC100133450          0.085   PREDICTED: hypothetical protein, partial 
LOC100287975          0.085   PREDICTED: hypothetical protein XP_002342501, parti...
LOC100132016          0.080   PREDICTED: hypothetical protein 
LOC100134730          0.077   PREDICTED: hypothetical protein 
LOC100132016          0.075   PREDICTED: hypothetical protein 
LOC100134139          0.072   PREDICTED: hypothetical protein 
LOC100133741          0.070   PREDICTED: hypothetical protein 
LOC100294466          0.067   PREDICTED: hypothetical protein, partial 
LOC100133975          0.062   PREDICTED: hypothetical protein, partial 
LOC100291751          0.062   PREDICTED: hypothetical protein XP_002345809, parti...
LOC100128267          0.060   PREDICTED: hypothetical protein, partial 
LOC100133226          0.060   PREDICTED: hypothetical protein 
LOC100134395          0.057   PREDICTED: hypothetical protein, partial 
LOC100133844          0.057   PREDICTED: hypothetical protein 
LOC100132423          0.057   PREDICTED: hypothetical protein, partial 
LOC100129825          0.057   PREDICTED: hypothetical protein 
LOC100133173          0.050   PREDICTED: hypothetical protein 
KRTAP4-8              0.050   PREDICTED: keratin associated protein 4-8 isoform 3...
LOC100134267          0.050   PREDICTED: similar to keratin associated protein 4-...
LOC100293574          0.050   PREDICTED: hypothetical protein, partial 
LOC100134411          0.050   PREDICTED: hypothetical protein 
KRTAP10-8             0.047   keratin associated protein 10-8 
LOC100129802          0.047   PREDICTED: hypothetical protein, partial 
LOC100290334          0.047   PREDICTED: hypothetical protein XP_002346856, parti...
LOC100131488          0.047   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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