Guide to the Human Genome
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Name: LOC100133741 Sequence: fasta or formatted (246aa) NCBI GI: 169168037
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             1.6          4           2
 C cysteine           11.4         28           1
 D aspartate           1.2          3           1
 E glutamate           2.4          6           1
 F phenylalanine       2.0          5           3
 G glycine             1.6          4           1
 H histidine           7.7         19           1
 I isoleucine         14.2         35           1
 K lysine              0.8          2           1
 L leucine             4.9         12           2
 M methionine          9.8         24           1
 N asparagine          0.0          0           0
 P proline             1.2          3           1
 Q glutamine           0.4          1           1
 R arginine            1.2          3           1
 S serine              2.4          6           2
 T threonine           6.9         17           1
 V valine             10.2         25           1
 W tryptophan          0.0          0           0
 Y tyrosine           19.9         49           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100133226          0.394   PREDICTED: hypothetical protein 
LOC100134411          0.388   PREDICTED: hypothetical protein 
LOC100132016          0.379   PREDICTED: hypothetical protein 
LOC100134060          0.362   PREDICTED: hypothetical protein 
LOC100129825          0.360   PREDICTED: hypothetical protein 
LOC100131203          0.354   PREDICTED: hypothetical protein 
LOC100131203          0.347   PREDICTED: similar to serine/threonine-protein kina...
LOC100131203          0.347   PREDICTED: similar to serine/threonine-protein kina...
LOC100132016          0.347   PREDICTED: hypothetical protein 
LOC100134279          0.345   PREDICTED: hypothetical protein, partial 
LOC100288317          0.345   PREDICTED: hypothetical protein XP_002342505 
LOC100293574          0.341   PREDICTED: hypothetical protein, partial 
LOC100133450          0.341   PREDICTED: hypothetical protein, partial 
LOC100287975          0.341   PREDICTED: hypothetical protein XP_002342501, parti...
LOC100129642          0.335   PREDICTED: hypothetical protein 
LOC100132679          0.331   PREDICTED: hypothetical protein 
LOC100291751          0.331   PREDICTED: hypothetical protein XP_002345809, parti...
LOC100132983          0.330   PREDICTED: hypothetical protein 
LOC100134325          0.328   PREDICTED: hypothetical protein 
LOC100134139          0.328   PREDICTED: hypothetical protein 
LOC100134395          0.328   PREDICTED: hypothetical protein, partial 
LOC100133975          0.328   PREDICTED: hypothetical protein, partial 
LOC100129802          0.326   PREDICTED: hypothetical protein, partial 
LOC100134353          0.322   PREDICTED: hypothetical protein 
LOC100133515          0.322   PREDICTED: hypothetical protein 
LOC100134730          0.318   PREDICTED: hypothetical protein 
LOC100133173          0.315   PREDICTED: hypothetical protein 
LOC100133844          0.311   PREDICTED: hypothetical protein 
LOC100294466          0.311   PREDICTED: hypothetical protein, partial 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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