Guide to the Human Genome
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Name: LOC100290334 Sequence: fasta or formatted (109aa) NCBI GI: 239748917
Description:

PREDICTED: hypothetical protein XP_002346856, partial

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             1.8          2           1
 C cysteine           11.0         12           1
 D aspartate           2.8          3           1
 E glutamate           1.8          2           1
 F phenylalanine       2.8          3           1
 G glycine             0.0          0           0
 H histidine           5.5          6           1
 I isoleucine         20.2         22           1
 K lysine              3.7          4           2
 L leucine             1.8          2           1
 M methionine          4.6          5           1
 N asparagine          0.9          1           1
 P proline             1.8          2           1
 Q glutamine           0.9          1           1
 R arginine            0.9          1           1
 S serine              1.8          2           1
 T threonine           3.7          4           1
 V valine              9.2         10           1
 W tryptophan          1.8          2           1
 Y tyrosine           22.9         25           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346856, parti... 
LOC100133226          0.456   PREDICTED: hypothetical protein 
LOC100134447          0.443   PREDICTED: hypothetical protein 
LOC100134411          0.425   PREDICTED: hypothetical protein 
LOC100132983          0.417   PREDICTED: hypothetical protein 
LOC100129825          0.408   PREDICTED: hypothetical protein 
LOC100129825          0.399   PREDICTED: hypothetical protein 
LOC100134730          0.395   PREDICTED: hypothetical protein 
LOC100293574          0.395   PREDICTED: hypothetical protein, partial 
LOC100133807          0.390   PREDICTED: similar to serine/threonine-protein kina...
LOC100131203          0.377   PREDICTED: similar to serine/threonine-protein kina...
LOC100131203          0.377   PREDICTED: similar to serine/threonine-protein kina...
LOC100132016          0.373   PREDICTED: hypothetical protein 
LOC100129642          0.368   PREDICTED: hypothetical protein 
LOC100128267          0.368   PREDICTED: hypothetical protein, partial 
LOC100134353          0.364   PREDICTED: hypothetical protein 
LOC100133975          0.364   PREDICTED: hypothetical protein, partial 
LOC100133741          0.355   PREDICTED: hypothetical protein 
LOC100134139          0.351   PREDICTED: hypothetical protein 
LOC100288317          0.351   PREDICTED: hypothetical protein XP_002342505 
LOC100132016          0.351   PREDICTED: hypothetical protein 
LOC100134279          0.351   PREDICTED: hypothetical protein, partial 
LOC100133450          0.351   PREDICTED: hypothetical protein, partial 
LOC100287975          0.351   PREDICTED: hypothetical protein XP_002342501, parti...
LOC100134395          0.346   PREDICTED: hypothetical protein, partial 
LOC100294466          0.346   PREDICTED: hypothetical protein, partial 
LOC100134060          0.342   PREDICTED: hypothetical protein 
LOC100134332          0.338   PREDICTED: hypothetical protein, partial 
LOC100134576          0.333   PREDICTED: hypothetical protein 
LOC100133844          0.329   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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