Guide to the Human Genome
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Name: LOC100134576 Sequence: fasta or formatted (291aa) NCBI GI: 239508905
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.1         12           2
 C cysteine           10.3         30           2
 D aspartate           1.7          5           1
 E glutamate           1.7          5           2
 F phenylalanine       2.4          7           1
 G glycine             2.4          7           2
 H histidine           4.5         13           1
 I isoleucine         11.0         32           1
 K lysine              2.1          6           2
 L leucine             4.1         12           1
 M methionine          4.1         12           1
 N asparagine          1.0          3           1
 P proline             2.1          6           1
 Q glutamine           2.4          7           1
 R arginine            2.7          8           2
 S serine              5.2         15           2
 T threonine           7.2         21           2
 V valine             14.1         41           2
 W tryptophan          0.7          2           1
 Y tyrosine           16.2         47           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100134279          0.400   PREDICTED: hypothetical protein, partial 
LOC100133226          0.304   PREDICTED: hypothetical protein 
LOC100133450          0.299   PREDICTED: hypothetical protein, partial 
LOC100287975          0.299   PREDICTED: hypothetical protein XP_002342501, parti...
LOC100134139          0.297   PREDICTED: hypothetical protein 
LOC100134411          0.292   PREDICTED: hypothetical protein 
LOC100293574          0.291   PREDICTED: hypothetical protein, partial 
LOC100129825          0.289   PREDICTED: hypothetical protein 
LOC100132016          0.276   PREDICTED: hypothetical protein 
LOC100132983          0.273   PREDICTED: hypothetical protein 
LOC100133975          0.268   PREDICTED: hypothetical protein, partial 
LOC100133741          0.266   PREDICTED: hypothetical protein 
LOC100132679          0.266   PREDICTED: hypothetical protein 
LOC100288317          0.266   PREDICTED: hypothetical protein XP_002342505 
LOC100291751          0.263   PREDICTED: hypothetical protein XP_002345809, parti...
LOC100133807          0.263   PREDICTED: similar to serine/threonine-protein kina...
LOC100134395          0.261   PREDICTED: hypothetical protein, partial 
LOC100128267          0.255   PREDICTED: hypothetical protein, partial 
LOC100294466          0.253   PREDICTED: hypothetical protein, partial 
LOC100131203          0.252   PREDICTED: hypothetical protein 
LOC100133844          0.250   PREDICTED: hypothetical protein 
LOC100293155          0.250   PREDICTED: hypothetical protein 
LOC100129642          0.248   PREDICTED: hypothetical protein 
LOC100134730          0.248   PREDICTED: hypothetical protein 
LOC100131203          0.248   PREDICTED: similar to serine/threonine-protein kina...
LOC100131203          0.248   PREDICTED: similar to serine/threonine-protein kina...
LOC100132016          0.247   PREDICTED: hypothetical protein 
LOC100133173          0.247   PREDICTED: hypothetical protein 
LOC100134060          0.245   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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