Guide to the Human Genome
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Name: LOC100291751 Sequence: fasta or formatted (218aa) NCBI GI: 239753878
Description:

PREDICTED: hypothetical protein XP_002345809, partial

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             0.0          0           0
 C cysteine           14.7         32           1
 D aspartate           0.0          0           0
 E glutamate           0.0          0           0
 F phenylalanine       0.0          0           0
 G glycine             0.0          0           0
 H histidine           6.4         14           1
 I isoleucine         17.4         38           1
 K lysine              0.5          1           1
 L leucine             0.5          1           1
 M methionine          7.8         17           1
 N asparagine          0.9          2           1
 P proline             0.0          0           0
 Q glutamine           0.5          1           1
 R arginine            0.0          0           0
 S serine              0.0          0           0
 T threonine           9.6         21           1
 V valine             12.8         28           1
 W tryptophan          0.0          0           0
 X unknown             3.2          7           7
 Y tyrosine           25.7         56           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002345809, parti... 
LOC100133226          0.491   PREDICTED: hypothetical protein 
LOC100134411          0.457   PREDICTED: hypothetical protein 
LOC100132016          0.446   PREDICTED: hypothetical protein 
LOC100293574          0.436   PREDICTED: hypothetical protein, partial 
LOC100134060          0.433   PREDICTED: hypothetical protein 
LOC100131203          0.431   PREDICTED: similar to serine/threonine-protein kina...
LOC100131203          0.431   PREDICTED: similar to serine/threonine-protein kina...
LOC100131203          0.431   PREDICTED: hypothetical protein 
LOC100134279          0.423   PREDICTED: hypothetical protein, partial 
LOC100129642          0.421   PREDICTED: hypothetical protein 
LOC100288317          0.416   PREDICTED: hypothetical protein XP_002342505 
LOC100129825          0.410   PREDICTED: hypothetical protein 
LOC100133450          0.408   PREDICTED: hypothetical protein, partial 
LOC100287975          0.408   PREDICTED: hypothetical protein XP_002342501, parti...
LOC100132679          0.406   PREDICTED: hypothetical protein 
LOC100134395          0.403   PREDICTED: hypothetical protein, partial 
LOC100293155          0.391   PREDICTED: hypothetical protein 
LOC100129802          0.391   PREDICTED: hypothetical protein, partial 
LOC100134730          0.391   PREDICTED: hypothetical protein 
LOC100294466          0.386   PREDICTED: hypothetical protein, partial 
LOC100132423          0.386   PREDICTED: hypothetical protein, partial 
LOC100132107          0.380   PREDICTED: hypothetical protein 
LOC100133975          0.378   PREDICTED: hypothetical protein, partial 
LOC100134353          0.378   PREDICTED: hypothetical protein 
LOC100133776          0.376   PREDICTED: similar to hCG1820441 
LOC100133807          0.376   PREDICTED: similar to serine/threonine-protein kina...
LOC100133741          0.376   PREDICTED: hypothetical protein 
LOC100132016          0.376   PREDICTED: hypothetical protein 
LOC100133515          0.376   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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