Guide to the Human Genome
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Name: LOC100133173 Sequence: fasta or formatted (232aa) NCBI GI: 169166365
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             0.9          2           1
 C cysteine            9.9         23           1
 D aspartate           0.4          1           1
 E glutamate           0.9          2           1
 F phenylalanine       1.3          3           1
 G glycine             0.0          0           0
 H histidine          17.7         41           1
 I isoleucine         17.2         40           2
 K lysine              0.4          1           1
 L leucine             2.2          5           1
 M methionine          4.7         11           1
 N asparagine          1.3          3           1
 P proline             0.0          0           0
 Q glutamine           0.4          1           1
 R arginine            0.9          2           1
 S serine              0.9          2           1
 T threonine          12.5         29           1
 V valine             11.6         27           1
 W tryptophan          0.0          0           0
 Y tyrosine           16.8         39           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100133226          0.398   PREDICTED: hypothetical protein 
LOC100131203          0.396   PREDICTED: hypothetical protein 
LOC100288317          0.396   PREDICTED: hypothetical protein XP_002342505 
LOC100129642          0.393   PREDICTED: hypothetical protein 
LOC100131203          0.389   PREDICTED: similar to serine/threonine-protein kina...
LOC100131203          0.389   PREDICTED: similar to serine/threonine-protein kina...
LOC100134060          0.383   PREDICTED: hypothetical protein 
LOC100134411          0.369   PREDICTED: hypothetical protein 
LOC100134332          0.369   PREDICTED: hypothetical protein, partial 
LOC100132107          0.363   PREDICTED: hypothetical protein 
LOC100133450          0.355   PREDICTED: hypothetical protein, partial 
LOC100287975          0.355   PREDICTED: hypothetical protein XP_002342501, parti...
LOC100132782          0.354   PREDICTED: hypothetical protein 
LOC100132983          0.352   PREDICTED: hypothetical protein 
LOC100134279          0.352   PREDICTED: hypothetical protein, partial 
LOC100133515          0.350   PREDICTED: hypothetical protein 
LOC100132016          0.346   PREDICTED: hypothetical protein 
LOC100129825          0.344   PREDICTED: hypothetical protein 
LOC100129802          0.342   PREDICTED: hypothetical protein, partial 
LOC100132679          0.342   PREDICTED: hypothetical protein 
LOC100133553          0.340   PREDICTED: hypothetical protein, partial 
LOC100134139          0.334   PREDICTED: hypothetical protein 
LOC100133807          0.330   PREDICTED: similar to serine/threonine-protein kina...
LOC100133776          0.328   PREDICTED: similar to hCG1820441 
LOC100133844          0.328   PREDICTED: hypothetical protein 
LOC100134325          0.324   PREDICTED: hypothetical protein 
LOC100133741          0.324   PREDICTED: hypothetical protein 
LOC100293155          0.322   PREDICTED: hypothetical protein 
LOC100134730          0.320   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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