Guide to the Human Genome
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Name: LOC100134139 Sequence: fasta or formatted (365aa) NCBI GI: 169210316
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             2.5          9           1
 C cysteine            7.1         26           1
 D aspartate           3.0         11           2
 E glutamate           3.3         12           1
 F phenylalanine       1.6          6           1
 G glycine             1.9          7           1
 H histidine           4.9         18           1
 I isoleucine          9.9         36           1
 K lysine              4.1         15           2
 L leucine             4.9         18           3
 M methionine          2.2          8           1
 N asparagine          2.5          9           1
 P proline             4.7         17           2
 Q glutamine           2.7         10           4
 R arginine            4.4         16           2
 S serine              5.5         20           2
 T threonine           9.3         34           2
 V valine              9.9         36           2
 W tryptophan          1.6          6           2
 Y tyrosine           14.0         51           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100134279          0.276   PREDICTED: hypothetical protein, partial 
LOC100133226          0.265   PREDICTED: hypothetical protein 
LOC100288317          0.260   PREDICTED: hypothetical protein XP_002342505 
LOC100134325          0.255   PREDICTED: hypothetical protein 
LOC100134411          0.251   PREDICTED: hypothetical protein 
LOC100134060          0.246   PREDICTED: hypothetical protein 
LOC100129642          0.245   PREDICTED: hypothetical protein 
LOC100293574          0.245   PREDICTED: hypothetical protein, partial 
LOC100132016          0.244   PREDICTED: hypothetical protein 
LOC100131203          0.242   PREDICTED: hypothetical protein 
LOC100131203          0.241   PREDICTED: similar to serine/threonine-protein kina...
LOC100131203          0.241   PREDICTED: similar to serine/threonine-protein kina...
LOC100133450          0.235   PREDICTED: hypothetical protein, partial 
LOC100287975          0.235   PREDICTED: hypothetical protein XP_002342501, parti...
LOC100129802          0.231   PREDICTED: hypothetical protein, partial 
LOC100132983          0.231   PREDICTED: hypothetical protein 
LOC100133975          0.229   PREDICTED: hypothetical protein, partial 
LOC100134332          0.229   PREDICTED: hypothetical protein, partial 
LOC100129825          0.228   PREDICTED: hypothetical protein 
LOC100134576          0.227   PREDICTED: hypothetical protein 
LOC100132016          0.227   PREDICTED: hypothetical protein 
LOC100134395          0.226   PREDICTED: hypothetical protein, partial 
LOC100132679          0.226   PREDICTED: hypothetical protein 
LOC100133741          0.224   PREDICTED: hypothetical protein 
LOC100133553          0.224   PREDICTED: hypothetical protein, partial 
LOC100289649          0.224   PREDICTED: hypothetical protein XP_002342367 
LOC100291751          0.223   PREDICTED: hypothetical protein XP_002345809, parti...
LOC100132423          0.223   PREDICTED: hypothetical protein, partial 
LOC100129802          0.223   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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