Guide to the Human Genome
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Name: LOC100129825 Sequence: fasta or formatted (208aa) NCBI GI: 239744321
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {97aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             1.4          3           1
 C cysteine           12.5         26           1
 D aspartate           0.5          1           1
 E glutamate           0.5          1           1
 F phenylalanine       1.0          2           1
 G glycine             1.9          4           3
 H histidine           2.9          6           1
 I isoleucine         15.9         33           1
 K lysine              1.0          2           1
 L leucine             1.0          2           1
 M methionine          6.2         13           1
 N asparagine          0.5          1           1
 P proline             1.0          2           1
 Q glutamine           0.5          1           1
 R arginine            1.9          4           1
 S serine              2.4          5           1
 T threonine           4.8         10           2
 V valine             18.3         38           1
 W tryptophan          0.5          1           1
 Y tyrosine           25.5         53           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100133226          0.555   PREDICTED: hypothetical protein 
LOC100134411          0.540   PREDICTED: hypothetical protein 
LOC100293574          0.503   PREDICTED: hypothetical protein, partial 
LOC100134353          0.445   PREDICTED: hypothetical protein 
LOC100291751          0.440   PREDICTED: hypothetical protein XP_002345809, parti...
LOC100133807          0.440   PREDICTED: similar to serine/threonine-protein kina...
LOC100134279          0.438   PREDICTED: hypothetical protein, partial 
LOC100288317          0.438   PREDICTED: hypothetical protein XP_002342505 
LOC100132983          0.436   PREDICTED: hypothetical protein 
LOC100133741          0.433   PREDICTED: hypothetical protein 
LOC100134730          0.431   PREDICTED: hypothetical protein 
LOC100132016          0.429   PREDICTED: hypothetical protein 
LOC100132016          0.427   PREDICTED: hypothetical protein 
LOC100133975          0.427   PREDICTED: hypothetical protein, partial 
LOC100133844          0.424   PREDICTED: hypothetical protein 
LOC100129642          0.420   PREDICTED: hypothetical protein 
LOC100293155          0.418   PREDICTED: hypothetical protein 
LOC100133450          0.418   PREDICTED: hypothetical protein, partial 
LOC100287975          0.418   PREDICTED: hypothetical protein XP_002342501, parti...
LOC100132679          0.413   PREDICTED: hypothetical protein 
LOC100134060          0.406   PREDICTED: hypothetical protein 
LOC100134576          0.400   PREDICTED: hypothetical protein 
LOC100134139          0.400   PREDICTED: hypothetical protein 
LOC100133173          0.397   PREDICTED: hypothetical protein 
LOC100131203          0.393   PREDICTED: hypothetical protein 
LOC100132423          0.388   PREDICTED: hypothetical protein, partial 
LOC100132782          0.388   PREDICTED: hypothetical protein 
LOC100129802          0.384   PREDICTED: hypothetical protein, partial 
LOC100133515          0.384   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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