Guide to the Human Genome
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Name: LOC100293155 Sequence: fasta or formatted (222aa) NCBI GI: 239754410
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             1.8          4           2
 C cysteine           14.0         31           1
 D aspartate           0.5          1           1
 E glutamate           0.0          0           0
 F phenylalanine       0.5          1           1
 G glycine             2.3          5           1
 H histidine          10.4         23           1
 I isoleucine         13.1         29           1
 K lysine              1.4          3           1
 L leucine             5.9         13           1
 M methionine          9.0         20           1
 N asparagine          0.5          1           1
 P proline             1.4          3           1
 Q glutamine           0.9          2           1
 R arginine            0.5          1           1
 S serine              2.3          5           2
 T threonine           4.1          9           1
 V valine             13.5         30           1
 W tryptophan          0.0          0           0
 Y tyrosine           18.5         41           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100134279          0.409   PREDICTED: hypothetical protein, partial 
LOC100133226          0.392   PREDICTED: hypothetical protein 
LOC100129825          0.380   PREDICTED: hypothetical protein 
LOC100132983          0.378   PREDICTED: hypothetical protein 
LOC100132679          0.378   PREDICTED: hypothetical protein 
LOC100291751          0.374   PREDICTED: hypothetical protein XP_002345809, parti...
LOC100134332          0.361   PREDICTED: hypothetical protein, partial 
LOC100134353          0.359   PREDICTED: hypothetical protein 
LOC100134411          0.357   PREDICTED: hypothetical protein 
LOC100129642          0.357   PREDICTED: hypothetical protein 
LOC100133450          0.357   PREDICTED: hypothetical protein, partial 
LOC100132016          0.357   PREDICTED: hypothetical protein 
LOC100287975          0.357   PREDICTED: hypothetical protein XP_002342501, parti...
LOC100134730          0.355   PREDICTED: hypothetical protein 
LOC100288317          0.345   PREDICTED: hypothetical protein XP_002342505 
LOC100133173          0.345   PREDICTED: hypothetical protein 
LOC100134060          0.343   PREDICTED: hypothetical protein 
LOC100131203          0.343   PREDICTED: hypothetical protein 
LOC100131203          0.341   PREDICTED: similar to serine/threonine-protein kina...
LOC100131203          0.341   PREDICTED: similar to serine/threonine-protein kina...
LOC100133844          0.341   PREDICTED: hypothetical protein 
LOC100129802          0.339   PREDICTED: hypothetical protein, partial 
LOC100133975          0.339   PREDICTED: hypothetical protein, partial 
LOC100293574          0.337   PREDICTED: hypothetical protein, partial 
LOC100133741          0.337   PREDICTED: hypothetical protein 
LOC100132016          0.335   PREDICTED: hypothetical protein 
LOC100289649          0.329   PREDICTED: hypothetical protein XP_002342367 
LOC100133807          0.326   PREDICTED: similar to serine/threonine-protein kina...
LOC100132782          0.326   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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