HFE 12601

Name: HFE	Sequence: fasta or formatted (256aa)		NCBI GI: 21040343
Description: hemochromatosis protein isoform 4 precursor		Referenced in: HLA and Related Proteins Iron, Copper, and Arsenic Metabolism
Other entries for this name: alt prot [242aa] hemochromatosis protein isoform 3 precursor alt prot [334aa] hemochromatosis protein isoform 6 precursor alt prot [260aa] hemochromatosis protein isoform 7 precursor alt prot [246aa] hemochromatosis protein isoform 8 precursor alt prot [325aa] hemochromatosis protein isoform 9 precursor alt prot [168aa] hemochromatosis protein isoform 10 precursor alt prot [76aa] hemochromatosis protein isoform 11 precursor alt prot [348aa] hemochromatosis protein isoform 1 precursor
Composition: Amino acid Percentage Count Longest homopolymer A alanine 4.3 11 1 C cysteine 0.8 2 1 D aspartate 4.3 11 2 E glutamate 5.1 13 2 F phenylalanine 3.9 10 1 G glycine 7.0 18 1 H histidine 3.9 10 2 I isoleucine 5.5 14 2 K lysine 3.5 9 1 L leucine 12.5 32 4 M methionine 3.5 9 1 N asparagine 2.0 5 1 P proline 6.2 16 2 Q glutamine 5.5 14 1 R arginine 5.9 15 2 S serine 7.0 18 2 T threonine 5.1 13 2 V valine 8.2 21 2 W tryptophan 2.7 7 1 Y tyrosine 3.1 8 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 hemochromatosis protein isoform 4 precursor HFE 0.926 hemochromatosis protein isoform 3 precursor HFE 0.627 hemochromatosis protein isoform 7 precursor HFE 0.567 hemochromatosis protein isoform 8 precursor HFE 0.543 hemochromatosis protein isoform 9 precursor HFE 0.543 hemochromatosis protein isoform 1 precursor HFE 0.539 hemochromatosis protein isoform 10 precursor HFE 0.485 hemochromatosis protein isoform 6 precursor LOC652614 0.188 PREDICTED: similar to MHC class I antigen HLA-B 0.186 major histocompatibility complex, class I, B precurs... HLA-C 0.184 major histocompatibility complex, class I, C precurs... HLA-F 0.182 major histocompatibility complex, class I, F isofor... HLA-F 0.182 major histocompatibility complex, class I, F isofor... HLA-E 0.170 major histocompatibility complex, class I, E precurs... HLA-A 0.166 major histocompatibility complex, class I, A precurs... HLA-G 0.154 major histocompatibility complex, class I, G precurso... HFE 0.148 hemochromatosis protein isoform 11 precursor MICA 0.126 MHC class I polypeptide-related sequence A MR1 0.122 major histocompatibility complex, class I-related [Ho... MICB 0.116 MHC class I polypeptide-related sequence B AZGP1 0.108 alpha-2-glycoprotein 1, zinc HLA-DMB 0.092 major histocompatibility complex, class II, DM beta p... LOC100294318 0.088 PREDICTED: similar to major histocompatibility comp... LOC100294318 0.088 PREDICTED: similar to major histocompatibility comp... LOC100133583 0.086 PREDICTED: similar to major histocompatibility comp... HLA-DRB4 0.086 major histocompatibility complex, class II, DR beta ... HLA-DRB4 0.086 PREDICTED: major histocompatibility complex, class ... LOC100290966 0.084 PREDICTED: hypothetical protein XP_002346811 LOC100294276 0.084 PREDICTED: similar to major histocompatibility comp... LOC100294276 0.084 PREDICTED: similar to major histocompatibility comp... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.