Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: HLA-G Sequence: fasta or formatted (338aa) NCBI GI: 4504415
Description:

major histocompatibility complex, class I, G precursor

Referenced in:

HLA and Related Proteins
Ovary, Uterus and Placenta

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.4         35           2
 C cysteine            1.8          6           1
 D aspartate           5.3         18           2
 E glutamate           8.0         27           3
 F phenylalanine       2.4          8           1
 G glycine             6.8         23           1
 H histidine           2.7          9           2
 I isoleucine          2.4          8           2
 K lysine              3.0         10           2
 L leucine             8.9         30           3
 M methionine          3.0         10           1
 N asparagine          1.8          6           1
 P proline             5.0         17           2
 Q glutamine           5.0         17           1
 R arginine            7.4         25           2
 S serine              5.3         18           2
 T threonine           6.8         23           1
 V valine              6.8         23           3
 W tryptophan          3.3         11           1
 Y tyrosine            4.1         14           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   major histocompatibility complex, class I, G precurso... 
HLA-A                 0.842   major histocompatibility complex, class I, A precurs...
HLA-B                 0.809   major histocompatibility complex, class I, B precurs...
HLA-C                 0.790   major histocompatibility complex, class I, C precurs...
HLA-F                 0.781   major histocompatibility complex, class I, F isofor...
HLA-F                 0.781   major histocompatibility complex, class I, F isofor...
HLA-E                 0.775   major histocompatibility complex, class I, E precurs...
LOC652614             0.664   PREDICTED: similar to MHC class I antigen 
HLA-F                 0.423   major histocompatibility complex, class I, F isofor...
MR1                   0.297   major histocompatibility complex, class I-related [Ho...
HFE                   0.263   hemochromatosis protein isoform 1 precursor 
HFE                   0.246   hemochromatosis protein isoform 9 precursor 
AZGP1                 0.246   alpha-2-glycoprotein 1, zinc 
HFE                   0.238   hemochromatosis protein isoform 6 precursor 
HFE                   0.198   hemochromatosis protein isoform 7 precursor 
HFE                   0.173   hemochromatosis protein isoform 8 precursor 
MICA                  0.161   MHC class I polypeptide-related sequence A 
MICB                  0.157   MHC class I polypeptide-related sequence B 
FCGRT                 0.155   Fc fragment of IgG, receptor, transporter, alpha [H...
FCGRT                 0.155   Fc fragment of IgG, receptor, transporter, alpha [Hom...
HFE                   0.114   hemochromatosis protein isoform 10 precursor 
HFE                   0.114   hemochromatosis protein isoform 4 precursor 
HFE                   0.102   hemochromatosis protein isoform 3 precursor 
CD1A                  0.092   CD1A antigen precursor 
CD1C                  0.065   CD1C antigen precursor 
LOC100294318          0.065   PREDICTED: similar to major histocompatibility comp...
LOC100294318          0.065   PREDICTED: similar to major histocompatibility comp...
LOC100133583          0.062   PREDICTED: similar to major histocompatibility comp...
HLA-DPB1              0.061   major histocompatibility complex, class II, DP beta ...
CD1B                  0.059   CD1B antigen precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press