Guide to the Human Genome
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Name: CITED2 Sequence: fasta or formatted (270aa) NCBI GI: 19923343
Description:

Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2

Referenced in:

CREB / ATF Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8         21           2
 C cysteine            1.1          3           1
 D aspartate           3.7         10           1
 E glutamate           2.6          7           2
 F phenylalanine       4.1         11           1
 G glycine            14.1         38           3
 H histidine           8.5         23           3
 I isoleucine          2.2          6           1
 K lysine              1.5          4           1
 L leucine             5.2         14           1
 M methionine          6.7         18           2
 N asparagine          7.0         19           2
 P proline             9.3         25           2
 Q glutamine           5.9         16           4
 R arginine            2.6          7           1
 S serine              9.6         26           3
 T threonine           3.0          8           1
 V valine              3.3          9           1
 W tryptophan          0.4          1           1
 Y tyrosine            1.5          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Cbp/p300-interacting transactivator, with Glu/Asp-ri... 
CITED1                0.122   melanocyte-specific gene 1 isoform 1 
CITED1                0.122   melanocyte-specific gene 1 isoform 1 
CITED1                0.122   melanocyte-specific gene 1 isoform 2 
CITED1                0.122   melanocyte-specific gene 1 isoform 1 
CITED4                0.067   Cbp/p300-interacting transactivator, with Glu/Asp-ri...
ARID1B                0.063   AT rich interactive domain 1B (SWI1-like) isoform 2 ...
ARID1B                0.063   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
ARID1B                0.063   AT rich interactive domain 1B (SWI1-like) isoform 3 ...
MAF                   0.049   v-maf musculoaponeurotic fibrosarcoma oncogene homol...
MAF                   0.049   v-maf musculoaponeurotic fibrosarcoma oncogene homolo...
KRT10                 0.043   keratin 10 
YEATS2                0.043   YEATS domain containing 2 
KRT9                  0.040   keratin 9 
BHLHE22               0.040   basic helix-loop-helix domain containing, class B, 5...
ZIC2                  0.038   zinc finger protein of the cerebellum 2 
LOR                   0.038   loricrin 
RFX1                  0.036   regulatory factor X1 
KRT3                  0.036   keratin 3 
SIX3                  0.036   sine oculis homeobox homolog 3 
LRCH2                 0.036   leucine-rich repeats and calponin homology (CH) dom...
SOX3                  0.036   SRY (sex determining region Y)-box 3 
TRIO                  0.036   triple functional domain (PTPRF interacting) 
KRT1                  0.034   keratin 1 
PURA                  0.034   purine-rich element binding protein A 
CHERP                 0.034   calcium homeostasis endoplasmic reticulum protein [...
SLC4A5                0.034   sodium bicarbonate transporter 4 isoform a 
SLC4A5                0.034   sodium bicarbonate transporter 4 isoform c 
DMKN                  0.034   dermokine isoform 4 precursor 
DMKN                  0.034   dermokine isoform 5 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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