Guide to the Human Genome
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Name: ARID1B Sequence: fasta or formatted (2178aa) NCBI GI: 40068462
Description:

AT rich interactive domain 1B (SWI1-like) isoform 3

Referenced in:

Nonhistone Chromosomal Proteins

Other entries for this name:
alt prot [2191aa] AT rich interactive domain 1B (SWI1-like) isoform 2
alt prot [2231aa] AT rich interactive domain 1B (SWI1-like) isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.2        178          11
 C cysteine            0.9         19           1
 D aspartate           3.9         86           3
 E glutamate           4.5         99           3
 F phenylalanine       1.8         40           1
 G glycine            11.3        247          13
 H histidine           2.8         62           6
 I isoleucine          2.7         58           2
 K lysine              3.6         79           2
 L leucine             6.0        131           2
 M methionine          4.5         98           3
 N asparagine          3.4         75           3
 P proline            11.8        258           5
 Q glutamine           9.2        201          18
 R arginine            3.8         82           3
 S serine             11.1        241           4
 T threonine           3.3         71           3
 V valine              3.3         71           2
 W tryptophan          0.6         13           3
 Y tyrosine            3.2         69           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   AT rich interactive domain 1B (SWI1-like) isoform 3 ... 
ARID1B                0.998   AT rich interactive domain 1B (SWI1-like) isoform 2 ...
ARID1B                0.994   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
ARID1A                0.458   AT rich interactive domain 1A isoform a 
ARID1A                0.401   AT rich interactive domain 1A isoform b 
COL2A1                0.021   collagen, type II, alpha 1 isoform 2 precursor [Hom...
COL3A1                0.020   collagen type III alpha 1 preproprotein 
COL2A1                0.020   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL1A1                0.020   alpha 1 type I collagen preproprotein 
COL1A2                0.019   alpha 2 type I collagen 
ARID3B                0.018   AT rich interactive domain 3B 
HRNR                  0.018   hornerin 
ARID3A                0.018   AT rich interactive domain 3A (BRIGHT- like) protein ...
FLG2                  0.017   filaggrin family member 2 
ATN1                  0.017   atrophin-1 
ATN1                  0.017   atrophin-1 
ARID3C                0.017   AT rich interactive domain 3C (BRIGHT- like) 
NCOA6                 0.017   nuclear receptor coactivator 6 
COL11A1               0.017   alpha 1 type XI collagen isoform B preproprotein [Ho...
COL11A1               0.017   alpha 1 type XI collagen isoform C preproprotein [Ho...
COL11A1               0.017   alpha 1 type XI collagen isoform A preproprotein [Ho...
COL16A1               0.017   alpha 1 type XVI collagen precursor 
LOR                   0.017   loricrin 
WIPF1                 0.016   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.016   WAS/WASL interacting protein family, member 1 
COL4A5                0.016   type IV collagen alpha 5 isoform 1 precursor 
MN1                   0.016   meningioma  1 
COL4A5                0.016   type IV collagen alpha 5 isoform 3 precursor 
COL5A2                0.016   alpha 2 type V collagen preproprotein 
FLJ22184              0.016   PREDICTED: hypothetical protein FLJ22184 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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