Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: SLC4A5 Sequence: fasta or formatted (1137aa) NCBI GI: 125987596
Description:

sodium bicarbonate transporter 4 isoform a

Referenced in:

Solute Carrier Families

Other entries for this name:
alt prot [1121aa] sodium bicarbonate transporter 4 isoform c
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9         67           2
 C cysteine            1.7         19           1
 D aspartate           5.4         61           2
 E glutamate           5.1         58           2
 F phenylalanine       5.7         65           2
 G glycine             8.6         98           7
 H histidine           2.4         27           2
 I isoleucine          7.6         86           2
 K lysine              6.1         69           2
 L leucine            10.8        123           2
 M methionine          2.6         29           1
 N asparagine          2.6         30           1
 P proline             6.2         70           3
 Q glutamine           3.4         39           2
 R arginine            4.7         54           3
 S serine              7.4         84           3
 T threonine           5.0         57           2
 V valine              5.2         59           1
 W tryptophan          1.6         18           2
 Y tyrosine            2.1         24           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   sodium bicarbonate transporter 4 isoform a 
SLC4A5                0.982   sodium bicarbonate transporter 4 isoform c 
SLC4A4                0.561   solute carrier family 4, sodium bicarbonate cotrans...
SLC4A4                0.557   solute carrier family 4, sodium bicarbonate cotranspo...
SLC4A4                0.557   solute carrier family 4, sodium bicarbonate cotrans...
SLC4A10               0.416   solute carrier family 4, sodium bicarbonate transpo...
SLC4A8                0.413   solute carrier family 4, sodium bicarbonate cotransp...
SLC4A8                0.412   solute carrier family 4, sodium bicarbonate cotransp...
SLC4A9                0.358   solute carrier family 4, sodium bicarbonate cotrans...
SLC4A7                0.349   solute carrier family 4, sodium bicarbonate cotrans...
SLC4A3                0.251   solute carrier family 4, anion exchanger, member 3 ...
SLC4A3                0.251   solute carrier family 4, anion exchanger, member 3 ...
SLC4A2                0.249   solute carrier family 4, anion exchanger, member 2 ...
SLC4A1                0.219   solute carrier family 4, anion exchanger, member 1 [H...
SLC4A11               0.082   solute carrier family 4 member 11 
KRT9                  0.015   keratin 9 
POU4F1                0.015   POU domain, class 4, transcription factor 1 
AR                    0.014   androgen receptor isoform 1 
YEATS2                0.014   YEATS domain containing 2 
ARID1B                0.014   AT rich interactive domain 1B (SWI1-like) isoform 2 ...
ARID1B                0.014   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
ARID1B                0.014   AT rich interactive domain 1B (SWI1-like) isoform 3 ...
SHOX2                 0.014   short stature homeobox 2 isoform a 
SIX3                  0.013   sine oculis homeobox homolog 3 
ZIC2                  0.013   zinc finger protein of the cerebellum 2 
FAM98B                0.013   family with sequence similarity 98, member B isofor...
KRT10                 0.013   keratin 10 
SOX4                  0.013   SRY (sex determining region Y)-box 4 
FBL                   0.013   fibrillarin 
MAF                   0.012   v-maf musculoaponeurotic fibrosarcoma oncogene homol...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press