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Search of human proteins with 18641375
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|18641375 major histocompatibility complex, class II, DR beta
5 precursor [Homo sapiens]
(266 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|18641375 major histocompatibility complex, class II, DR beta ... 548 e-156
gi|239748785 PREDICTED: similar to HLA class II histocompatibili... 494 e-140
gi|239748820 PREDICTED: hypothetical protein XP_002346811 [Homo ... 487 e-138
gi|155030211 major histocompatibility complex, class II, DR beta... 485 e-137
gi|239740745 PREDICTED: similar to HLA class II histocompatibili... 482 e-136
gi|239740695 PREDICTED: similar to HLA class II histocompatibili... 482 e-136
gi|239740853 PREDICTED: similar to major histocompatibility comp... 475 e-134
gi|239740857 PREDICTED: similar to major histocompatibility comp... 474 e-134
gi|17986005 major histocompatibility complex, class II, DR beta ... 470 e-133
gi|52630344 major histocompatibility complex, class II, DR beta ... 467 e-132
gi|239740855 PREDICTED: similar to major histocompatibility comp... 461 e-130
gi|239740859 PREDICTED: similar to major histocompatibility comp... 459 e-129
gi|239740743 PREDICTED: similar to HLA class II histocompatibili... 424 e-119
gi|239740693 PREDICTED: similar to HLA class II histocompatibili... 424 e-119
gi|239758090 PREDICTED: major histocompatibility complex, class ... 411 e-115
gi|239758092 PREDICTED: similar to HLA class II histocompatibili... 409 e-114
gi|239748788 PREDICTED: similar to major histocompatibility comp... 344 5e-95
gi|239758095 PREDICTED: similar to major histocompatibility comp... 343 9e-95
gi|239740863 PREDICTED: similar to major histocompatibility comp... 343 9e-95
gi|239740749 PREDICTED: similar to major histocompatibility comp... 343 9e-95
gi|239513955 PREDICTED: similar to major histocompatibility comp... 343 9e-95
gi|169168591 PREDICTED: similar to major histocompatibility comp... 337 5e-93
gi|150418002 major histocompatibility complex, class II, DQ beta... 336 1e-92
gi|169217452 PREDICTED: similar to HLA class II histocompatibili... 333 7e-92
gi|239740920 PREDICTED: similar to major histocompatibility comp... 331 4e-91
gi|239740918 PREDICTED: similar to major histocompatibility comp... 331 4e-91
gi|24797076 major histocompatibility complex, class II, DP beta ... 313 1e-85
gi|4504403 major histocompatibility complex, class II, DO beta p... 287 6e-78
gi|169168671 PREDICTED: similar to MHC class II antigen [Homo sa... 251 6e-67
gi|169168589 PREDICTED: similar to MHC class II antigen [Homo sa... 199 2e-51
>gi|18641375 major histocompatibility complex, class II, DR beta 5
precursor [Homo sapiens]
Length = 266
Score = 548 bits (1411), Expect = e-156
Identities = 266/266 (100%), Positives = 266/266 (100%)
Query: 1 MVCLKLPGGSYMAKLTVTLMVLSSPLALAGDTRPRFLQQDKYECHFFNGTERVRFLHRDI 60
MVCLKLPGGSYMAKLTVTLMVLSSPLALAGDTRPRFLQQDKYECHFFNGTERVRFLHRDI
Sbjct: 1 MVCLKLPGGSYMAKLTVTLMVLSSPLALAGDTRPRFLQQDKYECHFFNGTERVRFLHRDI 60
Query: 61 YNQEEDLRFDSDVGEYRAVTELGRPDAEYWNSQKDFLEDRRAAVDTYCRHNYGVGESFTV 120
YNQEEDLRFDSDVGEYRAVTELGRPDAEYWNSQKDFLEDRRAAVDTYCRHNYGVGESFTV
Sbjct: 61 YNQEEDLRFDSDVGEYRAVTELGRPDAEYWNSQKDFLEDRRAAVDTYCRHNYGVGESFTV 120
Query: 121 QRRVEPKVTVYPARTQTLQHHNLLVCSVNGFYPGSIEVRWFRNSQEEKAGVVSTGLIQNG 180
QRRVEPKVTVYPARTQTLQHHNLLVCSVNGFYPGSIEVRWFRNSQEEKAGVVSTGLIQNG
Sbjct: 121 QRRVEPKVTVYPARTQTLQHHNLLVCSVNGFYPGSIEVRWFRNSQEEKAGVVSTGLIQNG 180
Query: 181 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRAQSESAQSKMLSGVGGFVLGLL 240
DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRAQSESAQSKMLSGVGGFVLGLL
Sbjct: 181 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRAQSESAQSKMLSGVGGFVLGLL 240
Query: 241 FLGAGLFIYFKNQKGHSGLHPTGLVS 266
FLGAGLFIYFKNQKGHSGLHPTGLVS
Sbjct: 241 FLGAGLFIYFKNQKGHSGLHPTGLVS 266
>gi|239748785 PREDICTED: similar to HLA class II histocompatibility
antigen, DRB1-9 beta chain [Homo sapiens]
Length = 266
Score = 494 bits (1272), Expect = e-140
Identities = 240/266 (90%), Positives = 252/266 (94%)
Query: 1 MVCLKLPGGSYMAKLTVTLMVLSSPLALAGDTRPRFLQQDKYECHFFNGTERVRFLHRDI 60
MVCLKLPGGS MA LTVTLMVLSSPLALAGDT+PRFL+QDK+ECHFFNGTERVR+LHR I
Sbjct: 1 MVCLKLPGGSCMAALTVTLMVLSSPLALAGDTQPRFLKQDKFECHFFNGTERVRYLHRGI 60
Query: 61 YNQEEDLRFDSDVGEYRAVTELGRPDAEYWNSQKDFLEDRRAAVDTYCRHNYGVGESFTV 120
YNQEE++RFDSDVGEYRAVTELGRP AE WNSQKDFLE RRA VDT CRHNYGVGESFTV
Sbjct: 61 YNQEENVRFDSDVGEYRAVTELGRPVAESWNSQKDFLERRRAEVDTVCRHNYGVGESFTV 120
Query: 121 QRRVEPKVTVYPARTQTLQHHNLLVCSVNGFYPGSIEVRWFRNSQEEKAGVVSTGLIQNG 180
QRRV P+VTVYPA+TQ LQHHNLLVCSV+GFYPGSIEVRWFRN QEEKAGVVSTGLIQNG
Sbjct: 121 QRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNG 180
Query: 181 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRAQSESAQSKMLSGVGGFVLGLL 240
DWTFQTLVMLETVPRSGEVYTCQVEHPSV SPLTVEWRA+SESAQSKMLSGVGGFVLGLL
Sbjct: 181 DWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSESAQSKMLSGVGGFVLGLL 240
Query: 241 FLGAGLFIYFKNQKGHSGLHPTGLVS 266
FLGAGLFIYF+NQKGHSGL PTG +S
Sbjct: 241 FLGAGLFIYFRNQKGHSGLQPTGFLS 266
>gi|239748820 PREDICTED: hypothetical protein XP_002346811 [Homo
sapiens]
Length = 266
Score = 487 bits (1254), Expect = e-138
Identities = 235/266 (88%), Positives = 249/266 (93%)
Query: 1 MVCLKLPGGSYMAKLTVTLMVLSSPLALAGDTRPRFLQQDKYECHFFNGTERVRFLHRDI 60
MVCL+LPGGS MA LTVTLMVLSSPLALAGDTRPRFL++ K+ECHFFNGTERVR L R
Sbjct: 1 MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEEVKFECHFFNGTERVRLLERYF 60
Query: 61 YNQEEDLRFDSDVGEYRAVTELGRPDAEYWNSQKDFLEDRRAAVDTYCRHNYGVGESFTV 120
+NQEE++RFDSDVGE+RAVTELGRPDAEYWNSQKD LE RRAAVDTYCRHNYGVGESFTV
Sbjct: 61 HNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQRRAAVDTYCRHNYGVGESFTV 120
Query: 121 QRRVEPKVTVYPARTQTLQHHNLLVCSVNGFYPGSIEVRWFRNSQEEKAGVVSTGLIQNG 180
QRRV PKVTVYP++TQ LQHHNLLVCSV+GFYPGSIEVRWFRN QEEK GVVSTGLI NG
Sbjct: 121 QRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNG 180
Query: 181 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRAQSESAQSKMLSGVGGFVLGLL 240
DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRA+SESAQSKMLSGVGGFVLGLL
Sbjct: 181 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLL 240
Query: 241 FLGAGLFIYFKNQKGHSGLHPTGLVS 266
FLGAGLFIYF+NQKGHSGL P G +S
Sbjct: 241 FLGAGLFIYFRNQKGHSGLQPRGFLS 266
>gi|155030211 major histocompatibility complex, class II, DR beta 1
precursor [Homo sapiens]
Length = 266
Score = 485 bits (1248), Expect = e-137
Identities = 236/266 (88%), Positives = 247/266 (92%)
Query: 1 MVCLKLPGGSYMAKLTVTLMVLSSPLALAGDTRPRFLQQDKYECHFFNGTERVRFLHRDI 60
MVCLKLPGGS M LTVTLMVLSSPLAL+GDTRPRFL Q K ECHFFNGTERVRFL R
Sbjct: 1 MVCLKLPGGSCMTALTVTLMVLSSPLALSGDTRPRFLWQPKRECHFFNGTERVRFLDRYF 60
Query: 61 YNQEEDLRFDSDVGEYRAVTELGRPDAEYWNSQKDFLEDRRAAVDTYCRHNYGVGESFTV 120
YNQEE +RFDSDVGE+RAVTELGRPDAEYWNSQKD LE RAAVDTYCRHNYGV ESFTV
Sbjct: 61 YNQEESVRFDSDVGEFRAVTELGRPDAEYWNSQKDILEQARAAVDTYCRHNYGVVESFTV 120
Query: 121 QRRVEPKVTVYPARTQTLQHHNLLVCSVNGFYPGSIEVRWFRNSQEEKAGVVSTGLIQNG 180
QRRV+PKVTVYP++TQ LQHHNLLVCSV+GFYPGSIEVRWF N QEEKAG+VSTGLIQNG
Sbjct: 121 QRRVQPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFLNGQEEKAGMVSTGLIQNG 180
Query: 181 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRAQSESAQSKMLSGVGGFVLGLL 240
DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRA+SESAQSKMLSGVGGFVLGLL
Sbjct: 181 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLL 240
Query: 241 FLGAGLFIYFKNQKGHSGLHPTGLVS 266
FLGAGLFIYF+NQKGHSGL PTG +S
Sbjct: 241 FLGAGLFIYFRNQKGHSGLQPTGFLS 266
>gi|239740745 PREDICTED: similar to HLA class II histocompatibility
antigen, DRB1-7 beta chain isoform 1 [Homo sapiens]
Length = 266
Score = 482 bits (1240), Expect = e-136
Identities = 236/266 (88%), Positives = 246/266 (92%)
Query: 1 MVCLKLPGGSYMAKLTVTLMVLSSPLALAGDTRPRFLQQDKYECHFFNGTERVRFLHRDI 60
MVCLKLPGGS MA LTVTLMVLSSPLALAGDT+PRFL Q KY+CHFFNGTERV+FL R
Sbjct: 1 MVCLKLPGGSCMAALTVTLMVLSSPLALAGDTQPRFLWQGKYKCHFFNGTERVQFLERLF 60
Query: 61 YNQEEDLRFDSDVGEYRAVTELGRPDAEYWNSQKDFLEDRRAAVDTYCRHNYGVGESFTV 120
YNQEE +RFDSDVGEYRAVTELGRP AE WNSQKD LEDRR VDT CRHNYGVGESFTV
Sbjct: 61 YNQEEFVRFDSDVGEYRAVTELGRPVAESWNSQKDILEDRRGQVDTVCRHNYGVGESFTV 120
Query: 121 QRRVEPKVTVYPARTQTLQHHNLLVCSVNGFYPGSIEVRWFRNSQEEKAGVVSTGLIQNG 180
QRRV P+VTVYPA+TQ LQHHNLLVCSV+GFYPGSIEVRWFRN QEEKAGVVSTGLIQNG
Sbjct: 121 QRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNG 180
Query: 181 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRAQSESAQSKMLSGVGGFVLGLL 240
DWTFQTLVMLETVPRSGEVYTCQVEHPSV SPLTVEWRA+SESAQSKMLSGVGGFVLGLL
Sbjct: 181 DWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSESAQSKMLSGVGGFVLGLL 240
Query: 241 FLGAGLFIYFKNQKGHSGLHPTGLVS 266
FLGAGLFIYF+NQKGHSGL PTG +S
Sbjct: 241 FLGAGLFIYFRNQKGHSGLQPTGFLS 266
>gi|239740695 PREDICTED: similar to HLA class II histocompatibility
antigen, DRB1-7 beta chain isoform 1 [Homo sapiens]
Length = 266
Score = 482 bits (1240), Expect = e-136
Identities = 236/266 (88%), Positives = 246/266 (92%)
Query: 1 MVCLKLPGGSYMAKLTVTLMVLSSPLALAGDTRPRFLQQDKYECHFFNGTERVRFLHRDI 60
MVCLKLPGGS MA LTVTLMVLSSPLALAGDT+PRFL Q KY+CHFFNGTERV+FL R
Sbjct: 1 MVCLKLPGGSCMAALTVTLMVLSSPLALAGDTQPRFLWQGKYKCHFFNGTERVQFLERLF 60
Query: 61 YNQEEDLRFDSDVGEYRAVTELGRPDAEYWNSQKDFLEDRRAAVDTYCRHNYGVGESFTV 120
YNQEE +RFDSDVGEYRAVTELGRP AE WNSQKD LEDRR VDT CRHNYGVGESFTV
Sbjct: 61 YNQEEFVRFDSDVGEYRAVTELGRPVAESWNSQKDILEDRRGQVDTVCRHNYGVGESFTV 120
Query: 121 QRRVEPKVTVYPARTQTLQHHNLLVCSVNGFYPGSIEVRWFRNSQEEKAGVVSTGLIQNG 180
QRRV P+VTVYPA+TQ LQHHNLLVCSV+GFYPGSIEVRWFRN QEEKAGVVSTGLIQNG
Sbjct: 121 QRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNG 180
Query: 181 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRAQSESAQSKMLSGVGGFVLGLL 240
DWTFQTLVMLETVPRSGEVYTCQVEHPSV SPLTVEWRA+SESAQSKMLSGVGGFVLGLL
Sbjct: 181 DWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSESAQSKMLSGVGGFVLGLL 240
Query: 241 FLGAGLFIYFKNQKGHSGLHPTGLVS 266
FLGAGLFIYF+NQKGHSGL PTG +S
Sbjct: 241 FLGAGLFIYFRNQKGHSGLQPTGFLS 266
>gi|239740853 PREDICTED: similar to major histocompatibility
complex, class II, DR beta 3 isoform 2 [Homo sapiens]
Length = 266
Score = 475 bits (1223), Expect = e-134
Identities = 232/266 (87%), Positives = 242/266 (90%)
Query: 1 MVCLKLPGGSYMAKLTVTLMVLSSPLALAGDTRPRFLQQDKYECHFFNGTERVRFLHRDI 60
MVCLKLPGGS +A LTVTLMVLSS LA AGDTRPRFL+ K ECHFFNGTERVRFL R
Sbjct: 1 MVCLKLPGGSSLAALTVTLMVLSSRLAFAGDTRPRFLELLKSECHFFNGTERVRFLERHF 60
Query: 61 YNQEEDLRFDSDVGEYRAVTELGRPDAEYWNSQKDFLEDRRAAVDTYCRHNYGVGESFTV 120
+NQEE RFDSDVGEYRAV ELGRPDAEYWNSQKD LE +R VD YCRHNYGVGESFTV
Sbjct: 61 HNQEEYARFDSDVGEYRAVRELGRPDAEYWNSQKDLLEQKRGQVDNYCRHNYGVGESFTV 120
Query: 121 QRRVEPKVTVYPARTQTLQHHNLLVCSVNGFYPGSIEVRWFRNSQEEKAGVVSTGLIQNG 180
QRRV P+VTVYPA+TQ LQHHNLLVCSV+GFYPGSIEVRWFRN QEEKAGVVSTGLIQNG
Sbjct: 121 QRRVHPQVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNG 180
Query: 181 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRAQSESAQSKMLSGVGGFVLGLL 240
DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEW A+SESAQSKMLSGVGGFVLGLL
Sbjct: 181 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWSARSESAQSKMLSGVGGFVLGLL 240
Query: 241 FLGAGLFIYFKNQKGHSGLHPTGLVS 266
FLGAGLFIYF+NQKGHSGL PTG +S
Sbjct: 241 FLGAGLFIYFRNQKGHSGLQPTGFLS 266
>gi|239740857 PREDICTED: similar to major histocompatibility
complex, class II, DR beta 3 isoform 2 [Homo sapiens]
Length = 266
Score = 474 bits (1219), Expect = e-134
Identities = 229/266 (86%), Positives = 243/266 (91%)
Query: 1 MVCLKLPGGSYMAKLTVTLMVLSSPLALAGDTRPRFLQQDKYECHFFNGTERVRFLHRDI 60
MVCL+LPGGS MA LTVTLMVLSSPLALAGDTRPRFL+ ECHFFNGTERVR+L R
Sbjct: 1 MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEYSTSECHFFNGTERVRYLDRYF 60
Query: 61 YNQEEDLRFDSDVGEYRAVTELGRPDAEYWNSQKDFLEDRRAAVDTYCRHNYGVGESFTV 120
+NQEE++RFDSDVGE+RAVTELGRPDAEYWNSQKD LE +R VD YCRHNYGV ESFTV
Sbjct: 61 HNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQKRGRVDNYCRHNYGVVESFTV 120
Query: 121 QRRVEPKVTVYPARTQTLQHHNLLVCSVNGFYPGSIEVRWFRNSQEEKAGVVSTGLIQNG 180
QRRV PKVTVYP++TQ LQHHNLLVCSV+GFYPGSIEVRWFRN QEEK GVVSTGLI NG
Sbjct: 121 QRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNG 180
Query: 181 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRAQSESAQSKMLSGVGGFVLGLL 240
DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRA+SESAQSKMLSGVGGFVLGLL
Sbjct: 181 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLL 240
Query: 241 FLGAGLFIYFKNQKGHSGLHPTGLVS 266
FLGAGLFIYF+NQKGHSGL P G +S
Sbjct: 241 FLGAGLFIYFRNQKGHSGLQPRGFLS 266
>gi|17986005 major histocompatibility complex, class II, DR beta 3
precursor [Homo sapiens]
Length = 266
Score = 470 bits (1210), Expect = e-133
Identities = 231/266 (86%), Positives = 242/266 (90%)
Query: 1 MVCLKLPGGSYMAKLTVTLMVLSSPLALAGDTRPRFLQQDKYECHFFNGTERVRFLHRDI 60
MVCLKLPGGS +A LTVTLMVLSS LA AGDTRPRFL+ K ECHFFNGTERVR+L R
Sbjct: 1 MVCLKLPGGSSLAALTVTLMVLSSRLAFAGDTRPRFLELRKSECHFFNGTERVRYLDRYF 60
Query: 61 YNQEEDLRFDSDVGEYRAVTELGRPDAEYWNSQKDFLEDRRAAVDTYCRHNYGVGESFTV 120
+NQEE LRFDSDVGEYRAVTELGRP AE WNSQKD LE +R VD YCRHNYGVGESFTV
Sbjct: 61 HNQEEFLRFDSDVGEYRAVTELGRPVAESWNSQKDLLEQKRGRVDNYCRHNYGVGESFTV 120
Query: 121 QRRVEPKVTVYPARTQTLQHHNLLVCSVNGFYPGSIEVRWFRNSQEEKAGVVSTGLIQNG 180
QRRV P+VTVYPA+TQ LQHHNLLVCSV+GFYPGSIEVRWFRN QEEKAGVVSTGLIQNG
Sbjct: 121 QRRVHPQVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNG 180
Query: 181 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRAQSESAQSKMLSGVGGFVLGLL 240
DWTFQTLVMLETVPRSGEVYTCQVEHPSVTS LTVEWRA+SESAQSKMLSGVGGFVLGLL
Sbjct: 181 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSALTVEWRARSESAQSKMLSGVGGFVLGLL 240
Query: 241 FLGAGLFIYFKNQKGHSGLHPTGLVS 266
FLGAGLFIYF+NQKGHSGL PTG +S
Sbjct: 241 FLGAGLFIYFRNQKGHSGLQPTGFLS 266
>gi|52630344 major histocompatibility complex, class II, DR beta 4
precursor [Homo sapiens]
Length = 266
Score = 467 bits (1201), Expect = e-132
Identities = 229/266 (86%), Positives = 244/266 (91%)
Query: 1 MVCLKLPGGSYMAKLTVTLMVLSSPLALAGDTRPRFLQQDKYECHFFNGTERVRFLHRDI 60
MVCLKLPGGS MA LTVTL VLSSPLALAGDT+PRFL+Q K ECHF NGTERV L R I
Sbjct: 1 MVCLKLPGGSCMAALTVTLTVLSSPLALAGDTQPRFLEQAKCECHFLNGTERVWNLIRYI 60
Query: 61 YNQEEDLRFDSDVGEYRAVTELGRPDAEYWNSQKDFLEDRRAAVDTYCRHNYGVGESFTV 120
YNQEE R++SD+GEY+AVTELGRPDAEYWNSQKD LE RRA VDTYCR+NYGV ESFTV
Sbjct: 61 YNQEEYARYNSDLGEYQAVTELGRPDAEYWNSQKDLLERRRAEVDTYCRYNYGVVESFTV 120
Query: 121 QRRVEPKVTVYPARTQTLQHHNLLVCSVNGFYPGSIEVRWFRNSQEEKAGVVSTGLIQNG 180
QRRV+PKVTVYP++TQ LQHHNLLVCSVNGFYPGSIEVRWFRN QEEKAGVVSTGLIQNG
Sbjct: 121 QRRVQPKVTVYPSKTQPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNG 180
Query: 181 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRAQSESAQSKMLSGVGGFVLGLL 240
DWTFQTLVMLETVPRSGEVYTCQVEHPS+ SPLTV+W A+SESAQSKMLSGVGGFVLGLL
Sbjct: 181 DWTFQTLVMLETVPRSGEVYTCQVEHPSMMSPLTVQWSARSESAQSKMLSGVGGFVLGLL 240
Query: 241 FLGAGLFIYFKNQKGHSGLHPTGLVS 266
FLG GLFIYF+NQKGHSGL PTGL+S
Sbjct: 241 FLGTGLFIYFRNQKGHSGLQPTGLLS 266
>gi|239740855 PREDICTED: similar to major histocompatibility
complex, class II, DR beta 3 isoform 1 [Homo sapiens]
Length = 267
Score = 461 bits (1187), Expect = e-130
Identities = 229/267 (85%), Positives = 239/267 (89%), Gaps = 1/267 (0%)
Query: 1 MVCLKLPGGSYMAKLTVTLMVLSSPLALAGDTRPRF-LQQDKYECHFFNGTERVRFLHRD 59
MVCLKLPGGS +A LTVTLMVLSS LA AGDTR + L K ECHFFNGTERVRFL R
Sbjct: 1 MVCLKLPGGSSLAALTVTLMVLSSRLAFAGDTRRKSTLWLLKSECHFFNGTERVRFLERH 60
Query: 60 IYNQEEDLRFDSDVGEYRAVTELGRPDAEYWNSQKDFLEDRRAAVDTYCRHNYGVGESFT 119
+NQEE RFDSDVGEYRAV ELGRPDAEYWNSQKD LE +R VD YCRHNYGVGESFT
Sbjct: 61 FHNQEEYARFDSDVGEYRAVRELGRPDAEYWNSQKDLLEQKRGQVDNYCRHNYGVGESFT 120
Query: 120 VQRRVEPKVTVYPARTQTLQHHNLLVCSVNGFYPGSIEVRWFRNSQEEKAGVVSTGLIQN 179
VQRRV P+VTVYPA+TQ LQHHNLLVCSV+GFYPGSIEVRWFRN QEEKAGVVSTGLIQN
Sbjct: 121 VQRRVHPQVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQN 180
Query: 180 GDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRAQSESAQSKMLSGVGGFVLGL 239
GDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEW A+SESAQSKMLSGVGGFVLGL
Sbjct: 181 GDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWSARSESAQSKMLSGVGGFVLGL 240
Query: 240 LFLGAGLFIYFKNQKGHSGLHPTGLVS 266
LFLGAGLFIYF+NQKGHSGL PTG +S
Sbjct: 241 LFLGAGLFIYFRNQKGHSGLQPTGFLS 267
>gi|239740859 PREDICTED: similar to major histocompatibility
complex, class II, DR beta 3 isoform 1 [Homo sapiens]
Length = 267
Score = 459 bits (1181), Expect = e-129
Identities = 226/267 (84%), Positives = 240/267 (89%), Gaps = 1/267 (0%)
Query: 1 MVCLKLPGGSYMAKLTVTLMVLSSPLALAGDTRPRF-LQQDKYECHFFNGTERVRFLHRD 59
MVCL+LPGGS MA LTVTLMVLSSPLALAGDTR + L ECHFFNGTERVR+L R
Sbjct: 1 MVCLRLPGGSCMAVLTVTLMVLSSPLALAGDTRRKCTLWVPTSECHFFNGTERVRYLDRY 60
Query: 60 IYNQEEDLRFDSDVGEYRAVTELGRPDAEYWNSQKDFLEDRRAAVDTYCRHNYGVGESFT 119
+NQEE++RFDSDVGE+RAVTELGRPDAEYWNSQKD LE +R VD YCRHNYGV ESFT
Sbjct: 61 FHNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQKRGRVDNYCRHNYGVVESFT 120
Query: 120 VQRRVEPKVTVYPARTQTLQHHNLLVCSVNGFYPGSIEVRWFRNSQEEKAGVVSTGLIQN 179
VQRRV PKVTVYP++TQ LQHHNLLVCSV+GFYPGSIEVRWFRN QEEK GVVSTGLI N
Sbjct: 121 VQRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHN 180
Query: 180 GDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRAQSESAQSKMLSGVGGFVLGL 239
GDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRA+SESAQSKMLSGVGGFVLGL
Sbjct: 181 GDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGL 240
Query: 240 LFLGAGLFIYFKNQKGHSGLHPTGLVS 266
LFLGAGLFIYF+NQKGHSGL P G +S
Sbjct: 241 LFLGAGLFIYFRNQKGHSGLQPRGFLS 267
>gi|239740743 PREDICTED: similar to HLA class II histocompatibility
antigen, DRB1-7 beta chain isoform 2 [Homo sapiens]
Length = 264
Score = 424 bits (1089), Expect = e-119
Identities = 205/232 (88%), Positives = 214/232 (92%)
Query: 35 RFLQQDKYECHFFNGTERVRFLHRDIYNQEEDLRFDSDVGEYRAVTELGRPDAEYWNSQK 94
RFL Q KY+CHFFNGTERV+FL R YNQEE +RFDSDVGEYRAVTELGRP AE WNSQK
Sbjct: 33 RFLWQGKYKCHFFNGTERVQFLERLFYNQEEFVRFDSDVGEYRAVTELGRPVAESWNSQK 92
Query: 95 DFLEDRRAAVDTYCRHNYGVGESFTVQRRVEPKVTVYPARTQTLQHHNLLVCSVNGFYPG 154
D LEDRR VDT CRHNYGVGESFTVQRRV P+VTVYPA+TQ LQHHNLLVCSV+GFYPG
Sbjct: 93 DILEDRRGQVDTVCRHNYGVGESFTVQRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPG 152
Query: 155 SIEVRWFRNSQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLT 214
SIEVRWFRN QEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSV SPLT
Sbjct: 153 SIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLT 212
Query: 215 VEWRAQSESAQSKMLSGVGGFVLGLLFLGAGLFIYFKNQKGHSGLHPTGLVS 266
VEWRA+SESAQSKMLSGVGGFVLGLLFLGAGLFIYF+NQKGHSGL PTG +S
Sbjct: 213 VEWRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQPTGFLS 264
>gi|239740693 PREDICTED: similar to HLA class II histocompatibility
antigen, DRB1-7 beta chain isoform 2 [Homo sapiens]
Length = 264
Score = 424 bits (1089), Expect = e-119
Identities = 205/232 (88%), Positives = 214/232 (92%)
Query: 35 RFLQQDKYECHFFNGTERVRFLHRDIYNQEEDLRFDSDVGEYRAVTELGRPDAEYWNSQK 94
RFL Q KY+CHFFNGTERV+FL R YNQEE +RFDSDVGEYRAVTELGRP AE WNSQK
Sbjct: 33 RFLWQGKYKCHFFNGTERVQFLERLFYNQEEFVRFDSDVGEYRAVTELGRPVAESWNSQK 92
Query: 95 DFLEDRRAAVDTYCRHNYGVGESFTVQRRVEPKVTVYPARTQTLQHHNLLVCSVNGFYPG 154
D LEDRR VDT CRHNYGVGESFTVQRRV P+VTVYPA+TQ LQHHNLLVCSV+GFYPG
Sbjct: 93 DILEDRRGQVDTVCRHNYGVGESFTVQRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPG 152
Query: 155 SIEVRWFRNSQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLT 214
SIEVRWFRN QEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSV SPLT
Sbjct: 153 SIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLT 212
Query: 215 VEWRAQSESAQSKMLSGVGGFVLGLLFLGAGLFIYFKNQKGHSGLHPTGLVS 266
VEWRA+SESAQSKMLSGVGGFVLGLLFLGAGLFIYF+NQKGHSGL PTG +S
Sbjct: 213 VEWRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQPTGFLS 264
>gi|239758090 PREDICTED: major histocompatibility complex, class II,
DR beta 4 [Homo sapiens]
Length = 278
Score = 411 bits (1056), Expect = e-115
Identities = 199/232 (85%), Positives = 213/232 (91%)
Query: 35 RFLQQDKYECHFFNGTERVRFLHRDIYNQEEDLRFDSDVGEYRAVTELGRPDAEYWNSQK 94
RFL+Q K ECHF NGTERV L R IYNQEE R++SD+GEY+AVTELGRPDAEYWNSQK
Sbjct: 47 RFLEQAKCECHFLNGTERVWNLIRYIYNQEEYARYNSDLGEYQAVTELGRPDAEYWNSQK 106
Query: 95 DFLEDRRAAVDTYCRHNYGVGESFTVQRRVEPKVTVYPARTQTLQHHNLLVCSVNGFYPG 154
D LE RRA VDTYCR+NYGV ESFTVQRRV+PKVTVYP++TQ LQHHNLLVCSVNGFYPG
Sbjct: 107 DLLERRRAEVDTYCRYNYGVVESFTVQRRVQPKVTVYPSKTQPLQHHNLLVCSVNGFYPG 166
Query: 155 SIEVRWFRNSQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLT 214
SIEVRWFRN QEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPS+ SPLT
Sbjct: 167 SIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSMMSPLT 226
Query: 215 VEWRAQSESAQSKMLSGVGGFVLGLLFLGAGLFIYFKNQKGHSGLHPTGLVS 266
V+W A+SESAQSKMLSGVGGFVLGLLFLG GLFIYF+NQKGHSGL PTGL+S
Sbjct: 227 VQWSARSESAQSKMLSGVGGFVLGLLFLGTGLFIYFRNQKGHSGLQPTGLLS 278
>gi|239758092 PREDICTED: similar to HLA class II histocompatibility
antigen, DRB1-7 beta chain [Homo sapiens]
Length = 253
Score = 409 bits (1051), Expect = e-114
Identities = 212/268 (79%), Positives = 225/268 (83%), Gaps = 17/268 (6%)
Query: 1 MVCLKLPGGSYMAKLTVTLMVLSSPLALAGDTRPRFLQQDKYECHFFNGTERVRFLHRDI 60
MVCLKLPGGS MA LTVTLMVLSSPLALAGDT+PRFL Q KY+CHFFNGTERV+FL R
Sbjct: 1 MVCLKLPGGSCMAALTVTLMVLSSPLALAGDTQPRFLWQGKYKCHFFNGTERVQFLERLF 60
Query: 61 YNQEEDLRFDSDVGEYRAVTELGRPDAEYWNSQKDFLEDRRAAVDTYCRHNYGVGESFTV 120
YNQEE +RFDSDVGEYRAVTELGRP AE Q D L C + +SF +
Sbjct: 61 YNQEEFVRFDSDVGEYRAVTELGRPVAEQKTKQGDLL----------C-----LPDSFPL 105
Query: 121 Q--RRVEPKVTVYPARTQTLQHHNLLVCSVNGFYPGSIEVRWFRNSQEEKAGVVSTGLIQ 178
V P+VTVYPA+TQ LQHHNLLVCSV+GFYPGSIEVRWFRN QEEKAGVVSTGLIQ
Sbjct: 106 PCFLLVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQ 165
Query: 179 NGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRAQSESAQSKMLSGVGGFVLG 238
NGDWTFQTLVMLETVPRSGEVYTCQVEHPSV SPLTVEWRA+SESAQSKMLSGVGGFVLG
Sbjct: 166 NGDWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSESAQSKMLSGVGGFVLG 225
Query: 239 LLFLGAGLFIYFKNQKGHSGLHPTGLVS 266
LLFLGAGLFIYF+NQKGHSGL PTG +S
Sbjct: 226 LLFLGAGLFIYFRNQKGHSGLQPTGFLS 253
>gi|239748788 PREDICTED: similar to major histocompatibility
complex, class II, DR beta 5 isoform 2 [Homo sapiens]
Length = 281
Score = 344 bits (882), Expect = 5e-95
Identities = 168/252 (66%), Positives = 200/252 (79%)
Query: 4 LKLPGGSYMAKLTVTLMVLSSPLALAGDTRPRFLQQDKYECHFFNGTERVRFLHRDIYNQ 63
L++PGG +A +T+ L +LS+P+A D+ F+ Q K C+F NGTERVR + R IYN+
Sbjct: 7 LRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRLVSRSIYNR 66
Query: 64 EEDLRFDSDVGEYRAVTELGRPDAEYWNSQKDFLEDRRAAVDTYCRHNYGVGESFTVQRR 123
EE +RFDSDVGE+RAVT LG P AEYWNSQKD LE +RAAVD CRHNY + T+QRR
Sbjct: 67 EEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELRTTLQRR 126
Query: 124 VEPKVTVYPARTQTLQHHNLLVCSVNGFYPGSIEVRWFRNSQEEKAGVVSTGLIQNGDWT 183
VEP VT+ P+RT+ L HHNLLVCSV FYP I+VRWFRN QEE AGVVST LI+NGDWT
Sbjct: 127 VEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTPLIRNGDWT 186
Query: 184 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRAQSESAQSKMLSGVGGFVLGLLFLG 243
FQ LVMLE P+ G+VYTC VEHPS+ SP+TVEWRAQSESAQSKMLSG+GGFVLGL+FLG
Sbjct: 187 FQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVLGLIFLG 246
Query: 244 AGLFIYFKNQKG 255
GL I+ ++QKG
Sbjct: 247 LGLIIHHRSQKG 258
>gi|239758095 PREDICTED: similar to major histocompatibility
complex, class II, DR beta 5 [Homo sapiens]
Length = 281
Score = 343 bits (880), Expect = 9e-95
Identities = 168/252 (66%), Positives = 199/252 (78%)
Query: 4 LKLPGGSYMAKLTVTLMVLSSPLALAGDTRPRFLQQDKYECHFFNGTERVRFLHRDIYNQ 63
L++PGG A +T+ L +LS+P+A D+ F+ Q K C+F NGTERVR + R IYN+
Sbjct: 7 LRIPGGLRAATVTLMLSMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRLVSRSIYNR 66
Query: 64 EEDLRFDSDVGEYRAVTELGRPDAEYWNSQKDFLEDRRAAVDTYCRHNYGVGESFTVQRR 123
EE +RFDSDVGE+RAVT LG P AEYWNSQKD LE +RAAVD CRHNY + T+QRR
Sbjct: 67 EEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELRTTLQRR 126
Query: 124 VEPKVTVYPARTQTLQHHNLLVCSVNGFYPGSIEVRWFRNSQEEKAGVVSTGLIQNGDWT 183
VEP VT+ P+RT+ L HHNLLVCSV FYP I+VRWFRN QEE AGVVST LI+NGDWT
Sbjct: 127 VEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNGQEETAGVVSTPLIRNGDWT 186
Query: 184 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRAQSESAQSKMLSGVGGFVLGLLFLG 243
FQ LVMLE P+ G+VYTC VEHPS+ SP+TVEWRAQSESAQSKMLSG+GGFVLGL+FLG
Sbjct: 187 FQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVLGLIFLG 246
Query: 244 AGLFIYFKNQKG 255
GL I+ ++QKG
Sbjct: 247 LGLIIHHRSQKG 258
>gi|239740863 PREDICTED: similar to major histocompatibility
complex, class II, DR beta 5 [Homo sapiens]
Length = 281
Score = 343 bits (880), Expect = 9e-95
Identities = 168/252 (66%), Positives = 199/252 (78%)
Query: 4 LKLPGGSYMAKLTVTLMVLSSPLALAGDTRPRFLQQDKYECHFFNGTERVRFLHRDIYNQ 63
L++PGG A +T+ L +LS+P+A D+ F+ Q K C+F NGTERVR + R IYN+
Sbjct: 7 LRIPGGLRAATVTLMLSMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRLVSRSIYNR 66
Query: 64 EEDLRFDSDVGEYRAVTELGRPDAEYWNSQKDFLEDRRAAVDTYCRHNYGVGESFTVQRR 123
EE +RFDSDVGE+RAVT LG P AEYWNSQKD LE +RAAVD CRHNY + T+QRR
Sbjct: 67 EEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELRTTLQRR 126
Query: 124 VEPKVTVYPARTQTLQHHNLLVCSVNGFYPGSIEVRWFRNSQEEKAGVVSTGLIQNGDWT 183
VEP VT+ P+RT+ L HHNLLVCSV FYP I+VRWFRN QEE AGVVST LI+NGDWT
Sbjct: 127 VEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTPLIRNGDWT 186
Query: 184 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRAQSESAQSKMLSGVGGFVLGLLFLG 243
FQ LVMLE P+ G+VYTC VEHPS+ SP+TVEWRAQSESAQSKMLSG+GGFVLGL+FLG
Sbjct: 187 FQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVLGLIFLG 246
Query: 244 AGLFIYFKNQKG 255
GL I+ ++QKG
Sbjct: 247 LGLIIHHRSQKG 258
>gi|239740749 PREDICTED: similar to major histocompatibility
complex, class II, DR beta 5 [Homo sapiens]
Length = 281
Score = 343 bits (880), Expect = 9e-95
Identities = 168/252 (66%), Positives = 199/252 (78%)
Query: 4 LKLPGGSYMAKLTVTLMVLSSPLALAGDTRPRFLQQDKYECHFFNGTERVRFLHRDIYNQ 63
L++PGG A +T+ L +LS+P+A D+ F+ Q K C+F NGTERVR + R IYN+
Sbjct: 7 LRIPGGLRAATVTLMLSMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRLVSRSIYNR 66
Query: 64 EEDLRFDSDVGEYRAVTELGRPDAEYWNSQKDFLEDRRAAVDTYCRHNYGVGESFTVQRR 123
EE +RFDSDVGE+RAVT LG P AEYWNSQKD LE +RAAVD CRHNY + T+QRR
Sbjct: 67 EEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELRTTLQRR 126
Query: 124 VEPKVTVYPARTQTLQHHNLLVCSVNGFYPGSIEVRWFRNSQEEKAGVVSTGLIQNGDWT 183
VEP VT+ P+RT+ L HHNLLVCSV FYP I+VRWFRN QEE AGVVST LI+NGDWT
Sbjct: 127 VEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNGQEETAGVVSTPLIRNGDWT 186
Query: 184 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRAQSESAQSKMLSGVGGFVLGLLFLG 243
FQ LVMLE P+ G+VYTC VEHPS+ SP+TVEWRAQSESAQSKMLSG+GGFVLGL+FLG
Sbjct: 187 FQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVLGLIFLG 246
Query: 244 AGLFIYFKNQKG 255
GL I+ ++QKG
Sbjct: 247 LGLIIHHRSQKG 258
>gi|239513955 PREDICTED: similar to major histocompatibility
complex, class II, DR beta 5 [Homo sapiens]
Length = 281
Score = 343 bits (880), Expect = 9e-95
Identities = 168/252 (66%), Positives = 199/252 (78%)
Query: 4 LKLPGGSYMAKLTVTLMVLSSPLALAGDTRPRFLQQDKYECHFFNGTERVRFLHRDIYNQ 63
L++PGG A +T+ L +LS+P+A D+ F+ Q K C+F NGTERVR + R IYN+
Sbjct: 7 LRIPGGLRAATVTLMLSMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRLVSRSIYNR 66
Query: 64 EEDLRFDSDVGEYRAVTELGRPDAEYWNSQKDFLEDRRAAVDTYCRHNYGVGESFTVQRR 123
EE +RFDSDVGE+RAVT LG P AEYWNSQKD LE +RAAVD CRHNY + T+QRR
Sbjct: 67 EEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELRTTLQRR 126
Query: 124 VEPKVTVYPARTQTLQHHNLLVCSVNGFYPGSIEVRWFRNSQEEKAGVVSTGLIQNGDWT 183
VEP VT+ P+RT+ L HHNLLVCSV FYP I+VRWFRN QEE AGVVST LI+NGDWT
Sbjct: 127 VEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTPLIRNGDWT 186
Query: 184 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRAQSESAQSKMLSGVGGFVLGLLFLG 243
FQ LVMLE P+ G+VYTC VEHPS+ SP+TVEWRAQSESAQSKMLSG+GGFVLGL+FLG
Sbjct: 187 FQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVLGLIFLG 246
Query: 244 AGLFIYFKNQKG 255
GL I+ ++QKG
Sbjct: 247 LGLIIHHRSQKG 258
>gi|169168591 PREDICTED: similar to major histocompatibility
complex, class II, DR beta 5 isoform 1 [Homo sapiens]
Length = 261
Score = 337 bits (865), Expect = 5e-93
Identities = 167/252 (66%), Positives = 198/252 (78%)
Query: 4 LKLPGGSYMAKLTVTLMVLSSPLALAGDTRPRFLQQDKYECHFFNGTERVRFLHRDIYNQ 63
L++PGG +A +T+ L +LS+P+A D+ F+ Q K C+F NGTERVR + R IYN+
Sbjct: 7 LRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVFQFKGMCYFTNGTERVRGVTRYIYNR 66
Query: 64 EEDLRFDSDVGEYRAVTELGRPDAEYWNSQKDFLEDRRAAVDTYCRHNYGVGESFTVQRR 123
EE RFDSDVG YRAVT LG P AEYWNSQK+ LE RA+VDT CRHNY + T+QRR
Sbjct: 67 EEYARFDSDVGVYRAVTPLGPPAAEYWNSQKEVLERTRASVDTVCRHNYQLELRTTLQRR 126
Query: 124 VEPKVTVYPARTQTLQHHNLLVCSVNGFYPGSIEVRWFRNSQEEKAGVVSTGLIQNGDWT 183
VEP VT+ P+RT+ L HHNLLVCSV FYP I+VRWFRN QEE AGVVST LI+NGDWT
Sbjct: 127 VEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTPLIRNGDWT 186
Query: 184 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRAQSESAQSKMLSGVGGFVLGLLFLG 243
FQ LVMLE P+ G+VYTC VEHPS+ SP+TVEWRAQSESAQSKMLSG+GGFVLGL+FLG
Sbjct: 187 FQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVLGLIFLG 246
Query: 244 AGLFIYFKNQKG 255
GL I+ ++QKG
Sbjct: 247 LGLIIHHRSQKG 258
>gi|150418002 major histocompatibility complex, class II, DQ beta 1
precursor [Homo sapiens]
Length = 261
Score = 336 bits (861), Expect = 1e-92
Identities = 169/252 (67%), Positives = 195/252 (77%)
Query: 4 LKLPGGSYMAKLTVTLMVLSSPLALAGDTRPRFLQQDKYECHFFNGTERVRFLHRDIYNQ 63
L++PG +A +T+ L +LSS LA D+ F+ Q K C+F NGTERVR + R IYN+
Sbjct: 7 LRIPGDLRVATVTLMLAMLSSLLAEGRDSPEDFVFQFKGMCYFTNGTERVRLVTRYIYNR 66
Query: 64 EEDLRFDSDVGEYRAVTELGRPDAEYWNSQKDFLEDRRAAVDTYCRHNYGVGESFTVQRR 123
EE RFDSDVG YRAVT GRPDAEYWNSQK+ LE RA +DT CRHNY V +QRR
Sbjct: 67 EEYARFDSDVGVYRAVTPQGRPDAEYWNSQKEVLEGTRAELDTVCRHNYEVAFRGILQRR 126
Query: 124 VEPKVTVYPARTQTLQHHNLLVCSVNGFYPGSIEVRWFRNSQEEKAGVVSTGLIQNGDWT 183
VEP VT+ P+RT+ L HHNLLVCSV FYPG I+VRWFRN QEE AGVVST LI+NGDWT
Sbjct: 127 VEPTVTISPSRTEALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDWT 186
Query: 184 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRAQSESAQSKMLSGVGGFVLGLLFLG 243
FQ LVMLE P+ G+VYTC VEHPS+ SP+TVEWRAQSESAQSKMLSGVGGFVLGL+FLG
Sbjct: 187 FQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGVGGFVLGLIFLG 246
Query: 244 AGLFIYFKNQKG 255
GL I ++QKG
Sbjct: 247 LGLIIRQRSQKG 258
>gi|169217452 PREDICTED: similar to HLA class II histocompatibility
antigen, DRB1-4 beta chain, partial [Homo sapiens]
Length = 223
Score = 333 bits (855), Expect = 7e-92
Identities = 158/177 (89%), Positives = 166/177 (93%)
Query: 35 RFLQQDKYECHFFNGTERVRFLHRDIYNQEEDLRFDSDVGEYRAVTELGRPDAEYWNSQK 94
RFL+Q K+ECHFFNGTERVRFL R Y+QEE +RFDSDVGEYRAVTELGRPDAEYWNSQK
Sbjct: 47 RFLEQVKHECHFFNGTERVRFLDRYFYHQEEYVRFDSDVGEYRAVTELGRPDAEYWNSQK 106
Query: 95 DFLEDRRAAVDTYCRHNYGVGESFTVQRRVEPKVTVYPARTQTLQHHNLLVCSVNGFYPG 154
D LE +RAAVDTYCRHNYGVGESFTVQRRV P+VTVYPA+TQ LQHHNLLVCSVNGFYPG
Sbjct: 107 DLLEQKRAAVDTYCRHNYGVGESFTVQRRVYPEVTVYPAKTQPLQHHNLLVCSVNGFYPG 166
Query: 155 SIEVRWFRNSQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTS 211
SIEVRWFRN QEEK GVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPS+TS
Sbjct: 167 SIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSLTS 223
>gi|239740920 PREDICTED: similar to major histocompatibility
complex, class II, DQ beta 1 isoform 2 [Homo sapiens]
Length = 261
Score = 331 bits (849), Expect = 4e-91
Identities = 163/252 (64%), Positives = 195/252 (77%)
Query: 4 LKLPGGSYMAKLTVTLMVLSSPLALAGDTRPRFLQQDKYECHFFNGTERVRFLHRDIYNQ 63
L++PGG +A +T+ L +LS+P+A D+ F+ Q K C+F NGTERVR + R IYN+
Sbjct: 7 LRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRGVTRYIYNR 66
Query: 64 EEDLRFDSDVGEYRAVTELGRPDAEYWNSQKDFLEDRRAAVDTYCRHNYGVGESFTVQRR 123
EE RFDSDVG YRAVT LG P AEYWNSQK+ LE RA +DT CRHNY + T+QRR
Sbjct: 67 EEYARFDSDVGVYRAVTPLGPPAAEYWNSQKEVLERTRAELDTVCRHNYQLELRTTLQRR 126
Query: 124 VEPKVTVYPARTQTLQHHNLLVCSVNGFYPGSIEVRWFRNSQEEKAGVVSTGLIQNGDWT 183
VEP VT+ P+RT+ L HHNLLVCSV FYP I+VRWFRN QEE GVVST LI+NGDWT
Sbjct: 127 VEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETTGVVSTPLIRNGDWT 186
Query: 184 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRAQSESAQSKMLSGVGGFVLGLLFLG 243
FQ LVMLE P+ G+VYTC VEHPS+ +P+ VEWRAQSESAQSKMLSG+GGFVLGL+FLG
Sbjct: 187 FQILVMLEMTPQRGDVYTCHVEHPSLQNPIIVEWRAQSESAQSKMLSGIGGFVLGLIFLG 246
Query: 244 AGLFIYFKNQKG 255
GL I+ ++QKG
Sbjct: 247 LGLIIHHRSQKG 258
>gi|239740918 PREDICTED: similar to major histocompatibility
complex, class II, DQ beta 1 isoform 1 [Homo sapiens]
Length = 281
Score = 331 bits (849), Expect = 4e-91
Identities = 163/252 (64%), Positives = 195/252 (77%)
Query: 4 LKLPGGSYMAKLTVTLMVLSSPLALAGDTRPRFLQQDKYECHFFNGTERVRFLHRDIYNQ 63
L++PGG +A +T+ L +LS+P+A D+ F+ Q K C+F NGTERVR + R IYN+
Sbjct: 7 LRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRGVTRYIYNR 66
Query: 64 EEDLRFDSDVGEYRAVTELGRPDAEYWNSQKDFLEDRRAAVDTYCRHNYGVGESFTVQRR 123
EE RFDSDVG YRAVT LG P AEYWNSQK+ LE RA +DT CRHNY + T+QRR
Sbjct: 67 EEYARFDSDVGVYRAVTPLGPPAAEYWNSQKEVLERTRAELDTVCRHNYQLELRTTLQRR 126
Query: 124 VEPKVTVYPARTQTLQHHNLLVCSVNGFYPGSIEVRWFRNSQEEKAGVVSTGLIQNGDWT 183
VEP VT+ P+RT+ L HHNLLVCSV FYP I+VRWFRN QEE GVVST LI+NGDWT
Sbjct: 127 VEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETTGVVSTPLIRNGDWT 186
Query: 184 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRAQSESAQSKMLSGVGGFVLGLLFLG 243
FQ LVMLE P+ G+VYTC VEHPS+ +P+ VEWRAQSESAQSKMLSG+GGFVLGL+FLG
Sbjct: 187 FQILVMLEMTPQRGDVYTCHVEHPSLQNPIIVEWRAQSESAQSKMLSGIGGFVLGLIFLG 246
Query: 244 AGLFIYFKNQKG 255
GL I+ ++QKG
Sbjct: 247 LGLIIHHRSQKG 258
>gi|24797076 major histocompatibility complex, class II, DP beta 1
precursor [Homo sapiens]
Length = 258
Score = 313 bits (802), Expect = 1e-85
Identities = 154/258 (59%), Positives = 190/258 (73%), Gaps = 2/258 (0%)
Query: 1 MVCLKLPGGSYMAKLTVTLMVLSSPLALAGDTRPRFLQQDKYECHFFNGTERVRFLHRDI 60
M+ L++ LT LMVL + + T +L Q + EC+ FNGT+R FL R I
Sbjct: 1 MMVLQVSAAPRTVALTALLMVLLTSVVQGRATPENYLFQGRQECYAFNGTQR--FLERYI 58
Query: 61 YNQEEDLRFDSDVGEYRAVTELGRPDAEYWNSQKDFLEDRRAAVDTYCRHNYGVGESFTV 120
YN+EE RFDSDVGE+RAVTELGRP AEYWNSQKD LE++RA D CRHNY +G T+
Sbjct: 59 YNREEFARFDSDVGEFRAVTELGRPAAEYWNSQKDILEEKRAVPDRMCRHNYELGGPMTL 118
Query: 121 QRRVEPKVTVYPARTQTLQHHNLLVCSVNGFYPGSIEVRWFRNSQEEKAGVVSTGLIQNG 180
QRRV+P+V V P++ LQHHNLLVC V FYPGSI+VRWF N QEE AGVVST LI+NG
Sbjct: 119 QRRVQPRVNVSPSKKGPLQHHNLLVCHVTDFYPGSIQVRWFLNGQEETAGVVSTNLIRNG 178
Query: 181 DWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRAQSESAQSKMLSGVGGFVLGLL 240
DWTFQ LVMLE P+ G+VYTCQVEH S+ SP+TVEW+AQS+SA+SK L+G GGFVLGL+
Sbjct: 179 DWTFQILVMLEMTPQQGDVYTCQVEHTSLDSPVTVEWKAQSDSARSKTLTGAGGFVLGLI 238
Query: 241 FLGAGLFIYFKNQKGHSG 258
G G+F++ +++K G
Sbjct: 239 ICGVGIFMHRRSKKVQRG 256
>gi|4504403 major histocompatibility complex, class II, DO beta
precursor [Homo sapiens]
Length = 273
Score = 287 bits (735), Expect = 6e-78
Identities = 140/246 (56%), Positives = 179/246 (72%)
Query: 11 YMAKLTVTLMVLSSPLALAGDTRPRFLQQDKYECHFFNGTERVRFLHRDIYNQEEDLRFD 70
++ L V L L S + D+ F+ Q K +C+F NGTE+V+F+ R I+N EE +RFD
Sbjct: 8 WVVALLVNLTRLDSSMTQGTDSPEDFVIQAKADCYFTNGTEKVQFVVRFIFNLEEYVRFD 67
Query: 71 SDVGEYRAVTELGRPDAEYWNSQKDFLEDRRAAVDTYCRHNYGVGESFTVQRRVEPKVTV 130
SDVG + A+T+LG+PDAE WNS+ D LE R AVD CRHNY +G FTV R+V+P+VTV
Sbjct: 68 SDVGMFVALTKLGQPDAEQWNSRLDLLERSRQAVDGVCRHNYRLGAPFTVGRKVQPEVTV 127
Query: 131 YPARTQTLQHHNLLVCSVNGFYPGSIEVRWFRNSQEEKAGVVSTGLIQNGDWTFQTLVML 190
YP RT L HNLL CSV GFYPG I+++WF N QEE+AGV+STG I+NGDWTFQT+VML
Sbjct: 128 YPERTPLLHQHNLLHCSVTGFYPGDIKIKWFLNGQEERAGVMSTGPIRNGDWTFQTVVML 187
Query: 191 ETVPRSGEVYTCQVEHPSVTSPLTVEWRAQSESAQSKMLSGVGGFVLGLLFLGAGLFIYF 250
E P G VYTC V+H S+ SP++VEWRAQSE + KMLSG+ F+LGL+FL G+ I
Sbjct: 188 EMTPELGHVYTCLVDHSSLLSPVSVEWRAQSEYSWRKMLSGIAAFLLGLIFLLVGIVIQL 247
Query: 251 KNQKGH 256
+ QKG+
Sbjct: 248 RAQKGY 253
>gi|169168671 PREDICTED: similar to MHC class II antigen [Homo
sapiens]
Length = 241
Score = 251 bits (640), Expect = 6e-67
Identities = 119/140 (85%), Positives = 129/140 (92%)
Query: 124 VEPKVTVYPARTQTLQHHNLLVCSVNGFYPGSIEVRWFRNSQEEKAGVVSTGLIQNGDWT 183
++PK T+YPA+T+ L H N LVCSV+GFYPGSIEVRWF+N QEEKA VVS GLIQNGDWT
Sbjct: 99 LQPKGTMYPAKTEPLHHRNPLVCSVSGFYPGSIEVRWFQNGQEEKAAVVSIGLIQNGDWT 158
Query: 184 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRAQSESAQSKMLSGVGGFVLGLLFLG 243
FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEW A++ESAQSKMLSGVGGFVLGLLFLG
Sbjct: 159 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWSARTESAQSKMLSGVGGFVLGLLFLG 218
Query: 244 AGLFIYFKNQKGHSGLHPTG 263
GLFIYF+NQKGHSGL PTG
Sbjct: 219 TGLFIYFRNQKGHSGLQPTG 238
>gi|169168589 PREDICTED: similar to MHC class II antigen [Homo
sapiens]
Length = 140
Score = 199 bits (507), Expect = 2e-51
Identities = 100/123 (81%), Positives = 107/123 (86%)
Query: 1 MVCLKLPGGSYMAKLTVTLMVLSSPLALAGDTRPRFLQQDKYECHFFNGTERVRFLHRDI 60
MVCLKLPGGS MA LTVTL VLSSPLALAGDT+PRFL+Q K ECHF NGTERV L R I
Sbjct: 1 MVCLKLPGGSCMAALTVTLTVLSSPLALAGDTQPRFLEQAKCECHFLNGTERVWNLIRYI 60
Query: 61 YNQEEDLRFDSDVGEYRAVTELGRPDAEYWNSQKDFLEDRRAAVDTYCRHNYGVGESFTV 120
YNQEE R++SD+GEY+AVTELGRPDAEYWNSQKD LE RRA VDTYCR+NYGV ESFTV
Sbjct: 61 YNQEEYARYNSDLGEYQAVTELGRPDAEYWNSQKDLLERRRAEVDTYCRYNYGVVESFTV 120
Query: 121 QRR 123
QRR
Sbjct: 121 QRR 123
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.136 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,399,400
Number of Sequences: 37866
Number of extensions: 441092
Number of successful extensions: 1014
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 877
Number of HSP's gapped (non-prelim): 124
length of query: 266
length of database: 18,247,518
effective HSP length: 100
effective length of query: 166
effective length of database: 14,460,918
effective search space: 2400512388
effective search space used: 2400512388
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.