LOC100294161 16545

Name: LOC100294161	Sequence: fasta or formatted (266aa)		NCBI GI: 239740695
Description: PREDICTED: similar to HLA class II histocompatibility antigen, DRB1-7 beta chain isoform 1		Referenced in: HLA and Related Proteins
Other entries for this name: alt prot [264aa] PREDICTED: similar to HLA class II histocompatibility antigen, DR...
Composition: Amino acid Percentage Count Longest homopolymer A alanine 4.1 11 2 C cysteine 2.3 6 1 D aspartate 2.6 7 1 E glutamate 6.8 18 2 F phenylalanine 6.0 16 2 G glycine 9.8 26 2 H histidine 2.6 7 2 I isoleucine 1.5 4 1 K lysine 3.0 8 1 L leucine 10.2 27 2 M methionine 2.3 6 1 N asparagine 3.0 8 1 P proline 4.5 12 1 Q glutamine 6.0 16 1 R arginine 6.4 17 2 S serine 7.5 20 2 T threonine 6.0 16 1 V valine 10.5 28 2 W tryptophan 1.9 5 1 Y tyrosine 3.0 8 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 PREDICTED: similar to HLA class II histocompatibili... LOC100294189 1.000 PREDICTED: similar to HLA class II histocompatibili... LOC100294468 0.937 PREDICTED: similar to HLA class II histocompatibili... HLA-DRB3 0.899 major histocompatibility complex, class II, DR beta ... HLA-DRB1 0.899 major histocompatibility complex, class II, DR beta... LOC100290966 0.895 PREDICTED: hypothetical protein XP_002346811 LOC100294275 0.887 PREDICTED: similar to major histocompatibility comp... LOC100294276 0.880 PREDICTED: similar to major histocompatibility comp... LOC100294275 0.876 PREDICTED: similar to major histocompatibility comp... LOC100294189 0.874 PREDICTED: similar to HLA class II histocompatibili... LOC100294161 0.874 PREDICTED: similar to HLA class II histocompatibili... HLA-DRB5 0.874 major histocompatibility complex, class II, DR beta ... LOC100294276 0.864 PREDICTED: similar to major histocompatibility comp... HLA-DRB4 0.857 major histocompatibility complex, class II, DR beta ... LOC100294036 0.843 PREDICTED: similar to HLA class II histocompatibili... HLA-DRB4 0.736 PREDICTED: major histocompatibility complex, class ... LOC100293977 0.602 PREDICTED: similar to major histocompatibility comp... LOC100294191 0.602 PREDICTED: similar to major histocompatibility comp... LOC100133583 0.598 PREDICTED: similar to major histocompatibility comp... LOC100294278 0.598 PREDICTED: similar to major histocompatibility comp... LOC100294115 0.598 PREDICTED: similar to major histocompatibility comp... LOC100133583 0.595 PREDICTED: similar to major histocompatibility comp... HLA-DQB1 0.587 major histocompatibility complex, class II, DQ beta... LOC100294318 0.585 PREDICTED: similar to major histocompatibility comp... LOC100294318 0.585 PREDICTED: similar to major histocompatibility comp... LOC100133811 0.581 PREDICTED: similar to HLA class II histocompatibili... HLA-DPB1 0.572 major histocompatibility complex, class II, DP beta ... HLA-DOB 0.516 major histocompatibility complex, class II, DO beta p... LOC651845 0.446 PREDICTED: similar to MHC class II antigen LOC100133661 0.329 PREDICTED: similar to MHC class II antigen Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.