LOC100133661 7719

Name: LOC100133661	Sequence: fasta or formatted (140aa)		NCBI GI: 169168589
Description: PREDICTED: similar to MHC class II antigen		Referenced in: HLA and Related Proteins
Composition: Amino acid Percentage Count Longest homopolymer A alanine 6.4 9 2 C cysteine 5.0 7 1 D aspartate 4.3 6 1 E glutamate 8.6 12 2 F phenylalanine 3.6 5 1 G glycine 5.7 8 2 H histidine 1.4 2 1 I isoleucine 2.1 3 1 K lysine 2.1 3 1 L leucine 11.4 16 2 M methionine 1.4 2 1 N asparagine 5.7 8 1 P proline 2.9 4 1 Q glutamine 4.3 6 1 R arginine 8.6 12 3 S serine 5.7 8 2 T threonine 6.4 9 1 V valine 6.4 9 2 W tryptophan 1.4 2 1 Y tyrosine 6.4 9 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 PREDICTED: similar to MHC class II antigen HLA-DRB4 0.859 major histocompatibility complex, class II, DR beta ... LOC100290966 0.670 PREDICTED: hypothetical protein XP_002346811 HLA-DRB1 0.667 major histocompatibility complex, class II, DR beta... LOC100294468 0.659 PREDICTED: similar to HLA class II histocompatibili... LOC100294276 0.656 PREDICTED: similar to major histocompatibility comp... HLA-DRB5 0.644 major histocompatibility complex, class II, DR beta ... LOC100294189 0.637 PREDICTED: similar to HLA class II histocompatibili... LOC100294161 0.637 PREDICTED: similar to HLA class II histocompatibili... LOC100294275 0.633 PREDICTED: similar to major histocompatibility comp... HLA-DRB4 0.615 PREDICTED: major histocompatibility complex, class ... HLA-DRB3 0.607 major histocompatibility complex, class II, DR beta ... LOC100294276 0.596 PREDICTED: similar to major histocompatibility comp... LOC100294275 0.578 PREDICTED: similar to major histocompatibility comp... LOC100133811 0.467 PREDICTED: similar to HLA class II histocompatibili... LOC100294036 0.448 PREDICTED: similar to HLA class II histocompatibili... LOC100294318 0.415 PREDICTED: similar to major histocompatibility comp... LOC100294318 0.415 PREDICTED: similar to major histocompatibility comp... LOC100133583 0.411 PREDICTED: similar to major histocompatibility comp... LOC100294189 0.404 PREDICTED: similar to HLA class II histocompatibili... LOC100294161 0.404 PREDICTED: similar to HLA class II histocompatibili... HLA-DQB1 0.396 major histocompatibility complex, class II, DQ beta... LOC100133583 0.381 PREDICTED: similar to major histocompatibility comp... LOC100293977 0.378 PREDICTED: similar to major histocompatibility comp... LOC100294278 0.378 PREDICTED: similar to major histocompatibility comp... LOC100294191 0.378 PREDICTED: similar to major histocompatibility comp... LOC100294115 0.378 PREDICTED: similar to major histocompatibility comp... HLA-DPB1 0.344 major histocompatibility complex, class II, DP beta ... HLA-DOB 0.333 major histocompatibility complex, class II, DO beta p... APC2 0.019 adenomatosis polyposis coli 2 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.