HLA-DQB1 5066

Name: HLA-DQB1	Sequence: fasta or formatted (261aa)		NCBI GI: 150418002
Description: major histocompatibility complex, class II, DQ beta 1 precursor		Referenced in: HLA and Related Proteins
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.0 13 1 C cysteine 1.5 4 1 D aspartate 4.2 11 1 E glutamate 6.9 18 2 F phenylalanine 4.2 11 1 G glycine 7.3 19 2 H histidine 2.3 6 2 I isoleucine 4.2 11 2 K lysine 2.7 7 2 L leucine 10.0 26 2 M methionine 2.7 7 1 N asparagine 3.1 8 1 P proline 4.2 11 1 Q glutamine 5.0 13 1 R arginine 8.8 23 2 S serine 6.5 17 2 T threonine 6.9 18 1 V valine 9.2 24 2 W tryptophan 1.9 5 1 Y tyrosine 3.4 9 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 major histocompatibility complex, class II, DQ beta... LOC100133583 0.913 PREDICTED: similar to major histocompatibility comp... LOC100294318 0.907 PREDICTED: similar to major histocompatibility comp... LOC100294318 0.895 PREDICTED: similar to major histocompatibility comp... LOC100133583 0.858 PREDICTED: similar to major histocompatibility comp... LOC100294278 0.852 PREDICTED: similar to major histocompatibility comp... LOC100294115 0.852 PREDICTED: similar to major histocompatibility comp... LOC100293977 0.848 PREDICTED: similar to major histocompatibility comp... LOC100294191 0.848 PREDICTED: similar to major histocompatibility comp... HLA-DRB5 0.615 major histocompatibility complex, class II, DR beta ... LOC100290966 0.611 PREDICTED: hypothetical protein XP_002346811 HLA-DRB1 0.609 major histocompatibility complex, class II, DR beta... HLA-DRB4 0.609 major histocompatibility complex, class II, DR beta ... LOC100294189 0.607 PREDICTED: similar to HLA class II histocompatibili... LOC100294161 0.607 PREDICTED: similar to HLA class II histocompatibili... LOC100294275 0.605 PREDICTED: similar to major histocompatibility comp... LOC100294468 0.603 PREDICTED: similar to HLA class II histocompatibili... HLA-DPB1 0.597 major histocompatibility complex, class II, DP beta ... LOC100294276 0.595 PREDICTED: similar to major histocompatibility comp... LOC100294275 0.595 PREDICTED: similar to major histocompatibility comp... HLA-DRB3 0.587 major histocompatibility complex, class II, DR beta ... LOC100294276 0.583 PREDICTED: similar to major histocompatibility comp... HLA-DRB4 0.573 PREDICTED: major histocompatibility complex, class ... LOC100294189 0.573 PREDICTED: similar to HLA class II histocompatibili... LOC100294161 0.573 PREDICTED: similar to HLA class II histocompatibili... HLA-DOB 0.543 major histocompatibility complex, class II, DO beta p... LOC100294036 0.498 PREDICTED: similar to HLA class II histocompatibili... LOC100133811 0.447 PREDICTED: similar to HLA class II histocompatibili... LOC651845 0.332 PREDICTED: similar to MHC class II antigen LOC100133661 0.211 PREDICTED: similar to MHC class II antigen Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.