LOC100294161 16544

Name: LOC100294161	Sequence: fasta or formatted (264aa)		NCBI GI: 239740693
Description: PREDICTED: similar to HLA class II histocompatibility antigen, DRB1-7 beta chain isoform 2		Referenced in: HLA and Related Proteins
Other entries for this name: alt prot [266aa] PREDICTED: similar to HLA class II histocompatibility antigen, DR...
Composition: Amino acid Percentage Count Longest homopolymer A alanine 3.0 8 1 C cysteine 1.9 5 1 D aspartate 2.7 7 1 E glutamate 8.7 23 2 F phenylalanine 6.1 16 2 G glycine 9.8 26 2 H histidine 3.0 8 2 I isoleucine 1.5 4 1 K lysine 4.2 11 2 L leucine 8.3 22 2 M methionine 1.9 5 1 N asparagine 3.4 9 1 P proline 3.8 10 1 Q glutamine 6.4 17 2 R arginine 8.0 21 2 S serine 7.2 19 1 T threonine 5.3 14 1 V valine 9.8 26 2 W tryptophan 1.9 5 1 Y tyrosine 3.0 8 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 PREDICTED: similar to HLA class II histocompatibili... LOC100294189 1.000 PREDICTED: similar to HLA class II histocompatibili... LOC100294189 0.875 PREDICTED: similar to HLA class II histocompatibili... LOC100294161 0.875 PREDICTED: similar to HLA class II histocompatibili... LOC100294468 0.812 PREDICTED: similar to HLA class II histocompatibili... HLA-DRB3 0.797 major histocompatibility complex, class II, DR beta ... LOC100294275 0.787 PREDICTED: similar to major histocompatibility comp... LOC100294275 0.785 PREDICTED: similar to major histocompatibility comp... HLA-DRB1 0.782 major histocompatibility complex, class II, DR beta... LOC100290966 0.778 PREDICTED: hypothetical protein XP_002346811 HLA-DRB5 0.764 major histocompatibility complex, class II, DR beta ... LOC100294276 0.762 PREDICTED: similar to major histocompatibility comp... LOC100294276 0.762 PREDICTED: similar to major histocompatibility comp... HLA-DRB4 0.738 PREDICTED: major histocompatibility complex, class ... HLA-DRB4 0.738 major histocompatibility complex, class II, DR beta ... LOC100294036 0.718 PREDICTED: similar to HLA class II histocompatibili... LOC100133811 0.582 PREDICTED: similar to HLA class II histocompatibili... LOC100293977 0.565 PREDICTED: similar to major histocompatibility comp... LOC100294191 0.565 PREDICTED: similar to major histocompatibility comp... LOC100133583 0.559 PREDICTED: similar to major histocompatibility comp... LOC100294278 0.559 PREDICTED: similar to major histocompatibility comp... LOC100294115 0.559 PREDICTED: similar to major histocompatibility comp... HLA-DQB1 0.556 major histocompatibility complex, class II, DQ beta... LOC100133583 0.554 PREDICTED: similar to major histocompatibility comp... HLA-DPB1 0.552 major histocompatibility complex, class II, DP beta ... LOC100294318 0.544 PREDICTED: similar to major histocompatibility comp... LOC100294318 0.544 PREDICTED: similar to major histocompatibility comp... HLA-DOB 0.502 major histocompatibility complex, class II, DO beta p... LOC651845 0.446 PREDICTED: similar to MHC class II antigen LOC100133661 0.209 PREDICTED: similar to MHC class II antigen Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.