Guide to the Human Genome
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Name: LOC100134332 Sequence: fasta or formatted (241aa) NCBI GI: 239753574
Description:

PREDICTED: hypothetical protein, partial

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             1.7          4           1
 C cysteine            7.9         19           1
 D aspartate           0.8          2           1
 E glutamate           1.2          3           1
 F phenylalanine       1.7          4           1
 G glycine             0.4          1           1
 H histidine          16.6         40           1
 I isoleucine         16.2         39           1
 K lysine              2.5          6           1
 L leucine             4.6         11           1
 M methionine          4.6         11           1
 N asparagine          0.8          2           1
 P proline             0.4          1           1
 Q glutamine           1.2          3           1
 R arginine            0.4          1           1
 S serine              1.2          3           1
 T threonine          10.8         26           1
 V valine             11.6         28           1
 W tryptophan          0.4          1           1
 Y tyrosine           14.9         36           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein, partial 
LOC100289649          0.544   PREDICTED: hypothetical protein XP_002342367 
LOC100288317          0.433   PREDICTED: hypothetical protein XP_002342505 
LOC100129642          0.398   PREDICTED: hypothetical protein 
LOC100131203          0.377   PREDICTED: hypothetical protein 
LOC100133450          0.373   PREDICTED: hypothetical protein, partial 
LOC100287975          0.373   PREDICTED: hypothetical protein XP_002342501, parti...
LOC100134411          0.373   PREDICTED: hypothetical protein 
LOC100133226          0.365   PREDICTED: hypothetical protein 
LOC100133515          0.363   PREDICTED: hypothetical protein 
LOC100133173          0.363   PREDICTED: hypothetical protein 
LOC100134060          0.362   PREDICTED: hypothetical protein 
LOC100132107          0.358   PREDICTED: hypothetical protein 
LOC100131203          0.356   PREDICTED: similar to serine/threonine-protein kina...
LOC100131203          0.356   PREDICTED: similar to serine/threonine-protein kina...
LOC100132016          0.352   PREDICTED: hypothetical protein 
LOC100134730          0.352   PREDICTED: hypothetical protein 
LOC100134325          0.350   PREDICTED: hypothetical protein 
LOC100134279          0.344   PREDICTED: hypothetical protein, partial 
LOC100134139          0.342   PREDICTED: hypothetical protein 
LOC100128267          0.338   PREDICTED: hypothetical protein, partial 
LOC100133553          0.337   PREDICTED: hypothetical protein, partial 
LOC100291751          0.335   PREDICTED: hypothetical protein XP_002345809, parti...
LOC100132423          0.335   PREDICTED: hypothetical protein, partial 
LOC100129802          0.335   PREDICTED: hypothetical protein 
LOC100132983          0.333   PREDICTED: hypothetical protein 
LOC100293155          0.331   PREDICTED: hypothetical protein 
LOC100129802          0.331   PREDICTED: hypothetical protein, partial 
LOC100133844          0.329   PREDICTED: hypothetical protein 
LOC100132679          0.329   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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