Search of human proteins with 150418002

Search of human proteins with 150418002

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|150418002 major histocompatibility complex, class II, DQ
beta 1 precursor [Homo sapiens]
         (261 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|150418002 major histocompatibility complex, class II, DQ beta...   531   e-151
gi|169168591 PREDICTED: similar to major histocompatibility comp...   487   e-138
gi|239740920 PREDICTED: similar to major histocompatibility comp...   484   e-137
gi|239740918 PREDICTED: similar to major histocompatibility comp...   478   e-135
gi|239748788 PREDICTED: similar to major histocompatibility comp...   459   e-129
gi|239740863 PREDICTED: similar to major histocompatibility comp...   456   e-129
gi|239513955 PREDICTED: similar to major histocompatibility comp...   456   e-129
gi|239758095 PREDICTED: similar to major histocompatibility comp...   454   e-128
gi|239740749 PREDICTED: similar to major histocompatibility comp...   454   e-128
gi|18641375 major histocompatibility complex, class II, DR beta ...   336   1e-92
gi|239748820 PREDICTED: hypothetical protein XP_002346811 [Homo ...   334   5e-92
gi|155030211 major histocompatibility complex, class II, DR beta...   333   7e-92
gi|52630344 major histocompatibility complex, class II, DR beta ...   333   1e-91
gi|239740745 PREDICTED: similar to HLA class II histocompatibili...   332   3e-91
gi|239740695 PREDICTED: similar to HLA class II histocompatibili...   332   3e-91
gi|239740853 PREDICTED: similar to major histocompatibility comp...   331   4e-91
gi|239748785 PREDICTED: similar to HLA class II histocompatibili...   330   8e-91
gi|24797076 major histocompatibility complex, class II, DP beta ...   327   6e-90
gi|239740857 PREDICTED: similar to major histocompatibility comp...   326   1e-89
gi|239740855 PREDICTED: similar to major histocompatibility comp...   326   1e-89
gi|17986005 major histocompatibility complex, class II, DR beta ...   322   3e-88
gi|239740859 PREDICTED: similar to major histocompatibility comp...   320   8e-88
gi|239758090 PREDICTED: major histocompatibility complex, class ...   315   3e-86
gi|239740743 PREDICTED: similar to HLA class II histocompatibili...   315   3e-86
gi|239740693 PREDICTED: similar to HLA class II histocompatibili...   315   3e-86
gi|4504403 major histocompatibility complex, class II, DO beta p...   300   6e-82
gi|239758092 PREDICTED: similar to HLA class II histocompatibili...   277   8e-75
gi|169217452 PREDICTED: similar to HLA class II histocompatibili...   251   3e-67
gi|169168671 PREDICTED: similar to MHC class II antigen [Homo sa...   193   1e-49
gi|169168589 PREDICTED: similar to MHC class II antigen [Homo sa...   132   4e-31

>gi|150418002 major histocompatibility complex, class II, DQ beta 1
           precursor [Homo sapiens]
          Length = 261

 Score =  531 bits (1367), Expect = e-151
 Identities = 261/261 (100%), Positives = 261/261 (100%)

Query: 1   MSWKKALRIPGDLRVATVTLMLAMLSSLLAEGRDSPEDFVFQFKGMCYFTNGTERVRLVT 60
           MSWKKALRIPGDLRVATVTLMLAMLSSLLAEGRDSPEDFVFQFKGMCYFTNGTERVRLVT
Sbjct: 1   MSWKKALRIPGDLRVATVTLMLAMLSSLLAEGRDSPEDFVFQFKGMCYFTNGTERVRLVT 60

Query: 61  RYIYNREEYARFDSDVGVYRAVTPQGRPDAEYWNSQKEVLEGTRAELDTVCRHNYEVAFR 120
           RYIYNREEYARFDSDVGVYRAVTPQGRPDAEYWNSQKEVLEGTRAELDTVCRHNYEVAFR
Sbjct: 61  RYIYNREEYARFDSDVGVYRAVTPQGRPDAEYWNSQKEVLEGTRAELDTVCRHNYEVAFR 120

Query: 121 GILQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLI 180
           GILQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLI
Sbjct: 121 GILQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLI 180

Query: 181 RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGVGGFVL 240
           RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGVGGFVL
Sbjct: 181 RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGVGGFVL 240

Query: 241 GLIFLGLGLIIRQRSQKGLLH 261
           GLIFLGLGLIIRQRSQKGLLH
Sbjct: 241 GLIFLGLGLIIRQRSQKGLLH 261


>gi|169168591 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 5 isoform 1 [Homo sapiens]
          Length = 261

 Score =  487 bits (1254), Expect = e-138
 Identities = 240/261 (91%), Positives = 246/261 (94%)

Query: 1   MSWKKALRIPGDLRVATVTLMLAMLSSLLAEGRDSPEDFVFQFKGMCYFTNGTERVRLVT 60
           MSWKKALRIPG LRVATVTLMLAMLS+ +AEGRDSPEDFVFQFKGMCYFTNGTERVR VT
Sbjct: 1   MSWKKALRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVFQFKGMCYFTNGTERVRGVT 60

Query: 61  RYIYNREEYARFDSDVGVYRAVTPQGRPDAEYWNSQKEVLEGTRAELDTVCRHNYEVAFR 120
           RYIYNREEYARFDSDVGVYRAVTP G P AEYWNSQKEVLE TRA +DTVCRHNY++  R
Sbjct: 61  RYIYNREEYARFDSDVGVYRAVTPLGPPAAEYWNSQKEVLERTRASVDTVCRHNYQLELR 120

Query: 121 GILQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLI 180
             LQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYP QIKVRWFRNDQEETAGVVSTPLI
Sbjct: 121 TTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTPLI 180

Query: 181 RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGVGGFVL 240
           RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSG+GGFVL
Sbjct: 181 RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVL 240

Query: 241 GLIFLGLGLIIRQRSQKGLLH 261
           GLIFLGLGLII  RSQKGLLH
Sbjct: 241 GLIFLGLGLIIHHRSQKGLLH 261


>gi|239740920 PREDICTED: similar to major histocompatibility
           complex, class II, DQ beta 1 isoform 2 [Homo sapiens]
          Length = 261

 Score =  484 bits (1246), Expect = e-137
 Identities = 238/261 (91%), Positives = 245/261 (93%)

Query: 1   MSWKKALRIPGDLRVATVTLMLAMLSSLLAEGRDSPEDFVFQFKGMCYFTNGTERVRLVT 60
           MSWKKALRIPG LRVATVTLMLAMLS+ +AEGRDSPEDFV+QFKGMCYFTNGTERVR VT
Sbjct: 1   MSWKKALRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRGVT 60

Query: 61  RYIYNREEYARFDSDVGVYRAVTPQGRPDAEYWNSQKEVLEGTRAELDTVCRHNYEVAFR 120
           RYIYNREEYARFDSDVGVYRAVTP G P AEYWNSQKEVLE TRAELDTVCRHNY++  R
Sbjct: 61  RYIYNREEYARFDSDVGVYRAVTPLGPPAAEYWNSQKEVLERTRAELDTVCRHNYQLELR 120

Query: 121 GILQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLI 180
             LQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYP QIKVRWFRNDQEET GVVSTPLI
Sbjct: 121 TTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETTGVVSTPLI 180

Query: 181 RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGVGGFVL 240
           RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQ+PI VEWRAQSESAQSKMLSG+GGFVL
Sbjct: 181 RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQNPIIVEWRAQSESAQSKMLSGIGGFVL 240

Query: 241 GLIFLGLGLIIRQRSQKGLLH 261
           GLIFLGLGLII  RSQKGLLH
Sbjct: 241 GLIFLGLGLIIHHRSQKGLLH 261


>gi|239740918 PREDICTED: similar to major histocompatibility
           complex, class II, DQ beta 1 isoform 1 [Homo sapiens]
          Length = 281

 Score =  478 bits (1230), Expect = e-135
 Identities = 235/258 (91%), Positives = 242/258 (93%)

Query: 1   MSWKKALRIPGDLRVATVTLMLAMLSSLLAEGRDSPEDFVFQFKGMCYFTNGTERVRLVT 60
           MSWKKALRIPG LRVATVTLMLAMLS+ +AEGRDSPEDFV+QFKGMCYFTNGTERVR VT
Sbjct: 1   MSWKKALRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRGVT 60

Query: 61  RYIYNREEYARFDSDVGVYRAVTPQGRPDAEYWNSQKEVLEGTRAELDTVCRHNYEVAFR 120
           RYIYNREEYARFDSDVGVYRAVTP G P AEYWNSQKEVLE TRAELDTVCRHNY++  R
Sbjct: 61  RYIYNREEYARFDSDVGVYRAVTPLGPPAAEYWNSQKEVLERTRAELDTVCRHNYQLELR 120

Query: 121 GILQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLI 180
             LQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYP QIKVRWFRNDQEET GVVSTPLI
Sbjct: 121 TTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETTGVVSTPLI 180

Query: 181 RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGVGGFVL 240
           RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQ+PI VEWRAQSESAQSKMLSG+GGFVL
Sbjct: 181 RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQNPIIVEWRAQSESAQSKMLSGIGGFVL 240

Query: 241 GLIFLGLGLIIRQRSQKG 258
           GLIFLGLGLII  RSQKG
Sbjct: 241 GLIFLGLGLIIHHRSQKG 258


>gi|239748788 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 5 isoform 2 [Homo sapiens]
          Length = 281

 Score =  459 bits (1181), Expect = e-129
 Identities = 226/258 (87%), Positives = 237/258 (91%)

Query: 1   MSWKKALRIPGDLRVATVTLMLAMLSSLLAEGRDSPEDFVFQFKGMCYFTNGTERVRLVT 60
           MSWKKALRIPG LRVATVTLMLAMLS+ +AEGRDSPEDFV+QFKGMCYFTNGTERVRLV+
Sbjct: 1   MSWKKALRIPGGLRVATVTLMLAMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRLVS 60

Query: 61  RYIYNREEYARFDSDVGVYRAVTPQGRPDAEYWNSQKEVLEGTRAELDTVCRHNYEVAFR 120
           R IYNREE  RFDSDVG +RAVT  G P AEYWNSQK++LE  RA +D VCRHNY++  R
Sbjct: 61  RSIYNREEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELR 120

Query: 121 GILQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLI 180
             LQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYP QIKVRWFRNDQEETAGVVSTPLI
Sbjct: 121 TTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTPLI 180

Query: 181 RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGVGGFVL 240
           RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSG+GGFVL
Sbjct: 181 RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVL 240

Query: 241 GLIFLGLGLIIRQRSQKG 258
           GLIFLGLGLII  RSQKG
Sbjct: 241 GLIFLGLGLIIHHRSQKG 258


>gi|239740863 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 5 [Homo sapiens]
          Length = 281

 Score =  456 bits (1174), Expect = e-129
 Identities = 224/258 (86%), Positives = 236/258 (91%)

Query: 1   MSWKKALRIPGDLRVATVTLMLAMLSSLLAEGRDSPEDFVFQFKGMCYFTNGTERVRLVT 60
           MSWKKALRIPG LR ATVTLML+MLS+ +AEGRDSPEDFV+QFKGMCYFTNGTERVRLV+
Sbjct: 1   MSWKKALRIPGGLRAATVTLMLSMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRLVS 60

Query: 61  RYIYNREEYARFDSDVGVYRAVTPQGRPDAEYWNSQKEVLEGTRAELDTVCRHNYEVAFR 120
           R IYNREE  RFDSDVG +RAVT  G P AEYWNSQK++LE  RA +D VCRHNY++  R
Sbjct: 61  RSIYNREEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELR 120

Query: 121 GILQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLI 180
             LQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYP QIKVRWFRNDQEETAGVVSTPLI
Sbjct: 121 TTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTPLI 180

Query: 181 RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGVGGFVL 240
           RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSG+GGFVL
Sbjct: 181 RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVL 240

Query: 241 GLIFLGLGLIIRQRSQKG 258
           GLIFLGLGLII  RSQKG
Sbjct: 241 GLIFLGLGLIIHHRSQKG 258


>gi|239513955 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 5 [Homo sapiens]
          Length = 281

 Score =  456 bits (1174), Expect = e-129
 Identities = 224/258 (86%), Positives = 236/258 (91%)

Query: 1   MSWKKALRIPGDLRVATVTLMLAMLSSLLAEGRDSPEDFVFQFKGMCYFTNGTERVRLVT 60
           MSWKKALRIPG LR ATVTLML+MLS+ +AEGRDSPEDFV+QFKGMCYFTNGTERVRLV+
Sbjct: 1   MSWKKALRIPGGLRAATVTLMLSMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRLVS 60

Query: 61  RYIYNREEYARFDSDVGVYRAVTPQGRPDAEYWNSQKEVLEGTRAELDTVCRHNYEVAFR 120
           R IYNREE  RFDSDVG +RAVT  G P AEYWNSQK++LE  RA +D VCRHNY++  R
Sbjct: 61  RSIYNREEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELR 120

Query: 121 GILQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLI 180
             LQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYP QIKVRWFRNDQEETAGVVSTPLI
Sbjct: 121 TTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTPLI 180

Query: 181 RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGVGGFVL 240
           RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSG+GGFVL
Sbjct: 181 RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVL 240

Query: 241 GLIFLGLGLIIRQRSQKG 258
           GLIFLGLGLII  RSQKG
Sbjct: 241 GLIFLGLGLIIHHRSQKG 258


>gi|239758095 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 5 [Homo sapiens]
          Length = 281

 Score =  454 bits (1167), Expect = e-128
 Identities = 223/258 (86%), Positives = 235/258 (91%)

Query: 1   MSWKKALRIPGDLRVATVTLMLAMLSSLLAEGRDSPEDFVFQFKGMCYFTNGTERVRLVT 60
           MSWKKALRIPG LR ATVTLML+MLS+ +AEGRDSPEDFV+QFKGMCYFTNGTERVRLV+
Sbjct: 1   MSWKKALRIPGGLRAATVTLMLSMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRLVS 60

Query: 61  RYIYNREEYARFDSDVGVYRAVTPQGRPDAEYWNSQKEVLEGTRAELDTVCRHNYEVAFR 120
           R IYNREE  RFDSDVG +RAVT  G P AEYWNSQK++LE  RA +D VCRHNY++  R
Sbjct: 61  RSIYNREEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELR 120

Query: 121 GILQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLI 180
             LQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYP QIKVRWFRN QEETAGVVSTPLI
Sbjct: 121 TTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNGQEETAGVVSTPLI 180

Query: 181 RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGVGGFVL 240
           RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSG+GGFVL
Sbjct: 181 RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVL 240

Query: 241 GLIFLGLGLIIRQRSQKG 258
           GLIFLGLGLII  RSQKG
Sbjct: 241 GLIFLGLGLIIHHRSQKG 258


>gi|239740749 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 5 [Homo sapiens]
          Length = 281

 Score =  454 bits (1167), Expect = e-128
 Identities = 223/258 (86%), Positives = 235/258 (91%)

Query: 1   MSWKKALRIPGDLRVATVTLMLAMLSSLLAEGRDSPEDFVFQFKGMCYFTNGTERVRLVT 60
           MSWKKALRIPG LR ATVTLML+MLS+ +AEGRDSPEDFV+QFKGMCYFTNGTERVRLV+
Sbjct: 1   MSWKKALRIPGGLRAATVTLMLSMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRLVS 60

Query: 61  RYIYNREEYARFDSDVGVYRAVTPQGRPDAEYWNSQKEVLEGTRAELDTVCRHNYEVAFR 120
           R IYNREE  RFDSDVG +RAVT  G P AEYWNSQK++LE  RA +D VCRHNY++  R
Sbjct: 61  RSIYNREEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELR 120

Query: 121 GILQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLI 180
             LQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYP QIKVRWFRN QEETAGVVSTPLI
Sbjct: 121 TTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNGQEETAGVVSTPLI 180

Query: 181 RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGVGGFVL 240
           RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSG+GGFVL
Sbjct: 181 RNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGIGGFVL 240

Query: 241 GLIFLGLGLIIRQRSQKG 258
           GLIFLGLGLII  RSQKG
Sbjct: 241 GLIFLGLGLIIHHRSQKG 258


>gi|18641375 major histocompatibility complex, class II, DR beta 5
           precursor [Homo sapiens]
          Length = 266

 Score =  336 bits (861), Expect = 1e-92
 Identities = 169/252 (67%), Positives = 195/252 (77%)

Query: 7   LRIPGDLRVATVTLMLAMLSSLLAEGRDSPEDFVFQFKGMCYFTNGTERVRLVTRYIYNR 66
           L++PG   +A +T+ L +LSS LA   D+   F+ Q K  C+F NGTERVR + R IYN+
Sbjct: 4   LKLPGGSYMAKLTVTLMVLSSPLALAGDTRPRFLQQDKYECHFFNGTERVRFLHRDIYNQ 63

Query: 67  EEYARFDSDVGVYRAVTPQGRPDAEYWNSQKEVLEGTRAELDTVCRHNYEVAFRGILQRR 126
           EE  RFDSDVG YRAVT  GRPDAEYWNSQK+ LE  RA +DT CRHNY V     +QRR
Sbjct: 64  EEDLRFDSDVGEYRAVTELGRPDAEYWNSQKDFLEDRRAAVDTYCRHNYGVGESFTVQRR 123

Query: 127 VEPTVTISPSRTEALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDWT 186
           VEP VT+ P+RT+ L HHNLLVCSV  FYPG I+VRWFRN QEE AGVVST LI+NGDWT
Sbjct: 124 VEPKVTVYPARTQTLQHHNLLVCSVNGFYPGSIEVRWFRNSQEEKAGVVSTGLIQNGDWT 183

Query: 187 FQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGVGGFVLGLIFLG 246
           FQ LVMLE  P+ G+VYTC VEHPS+ SP+TVEWRAQSESAQSKMLSGVGGFVLGL+FLG
Sbjct: 184 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRAQSESAQSKMLSGVGGFVLGLLFLG 243

Query: 247 LGLIIRQRSQKG 258
            GL I  ++QKG
Sbjct: 244 AGLFIYFKNQKG 255


>gi|239748820 PREDICTED: hypothetical protein XP_002346811 [Homo
           sapiens]
          Length = 266

 Score =  334 bits (856), Expect = 5e-92
 Identities = 166/252 (65%), Positives = 195/252 (77%)

Query: 7   LRIPGDLRVATVTLMLAMLSSLLAEGRDSPEDFVFQFKGMCYFTNGTERVRLVTRYIYNR 66
           LR+PG   +A +T+ L +LSS LA   D+   F+ + K  C+F NGTERVRL+ RY +N+
Sbjct: 4   LRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEEVKFECHFFNGTERVRLLERYFHNQ 63

Query: 67  EEYARFDSDVGVYRAVTPQGRPDAEYWNSQKEVLEGTRAELDTVCRHNYEVAFRGILQRR 126
           EE  RFDSDVG +RAVT  GRPDAEYWNSQK++LE  RA +DT CRHNY V     +QRR
Sbjct: 64  EENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQRRAAVDTYCRHNYGVGESFTVQRR 123

Query: 127 VEPTVTISPSRTEALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDWT 186
           V P VT+ PS+T+ L HHNLLVCSV+ FYPG I+VRWFRN QEE  GVVST LI NGDWT
Sbjct: 124 VHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNGDWT 183

Query: 187 FQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGVGGFVLGLIFLG 246
           FQ LVMLE  P+ G+VYTC VEHPS+ SP+TVEWRA+SESAQSKMLSGVGGFVLGL+FLG
Sbjct: 184 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLLFLG 243

Query: 247 LGLIIRQRSQKG 258
            GL I  R+QKG
Sbjct: 244 AGLFIYFRNQKG 255


>gi|155030211 major histocompatibility complex, class II, DR beta 1
           precursor [Homo sapiens]
          Length = 266

 Score =  333 bits (855), Expect = 7e-92
 Identities = 164/252 (65%), Positives = 196/252 (77%)

Query: 7   LRIPGDLRVATVTLMLAMLSSLLAEGRDSPEDFVFQFKGMCYFTNGTERVRLVTRYIYNR 66
           L++PG   +  +T+ L +LSS LA   D+   F++Q K  C+F NGTERVR + RY YN+
Sbjct: 4   LKLPGGSCMTALTVTLMVLSSPLALSGDTRPRFLWQPKRECHFFNGTERVRFLDRYFYNQ 63

Query: 67  EEYARFDSDVGVYRAVTPQGRPDAEYWNSQKEVLEGTRAELDTVCRHNYEVAFRGILQRR 126
           EE  RFDSDVG +RAVT  GRPDAEYWNSQK++LE  RA +DT CRHNY V     +QRR
Sbjct: 64  EESVRFDSDVGEFRAVTELGRPDAEYWNSQKDILEQARAAVDTYCRHNYGVVESFTVQRR 123

Query: 127 VEPTVTISPSRTEALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDWT 186
           V+P VT+ PS+T+ L HHNLLVCSV+ FYPG I+VRWF N QEE AG+VST LI+NGDWT
Sbjct: 124 VQPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFLNGQEEKAGMVSTGLIQNGDWT 183

Query: 187 FQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGVGGFVLGLIFLG 246
           FQ LVMLE  P+ G+VYTC VEHPS+ SP+TVEWRA+SESAQSKMLSGVGGFVLGL+FLG
Sbjct: 184 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLLFLG 243

Query: 247 LGLIIRQRSQKG 258
            GL I  R+QKG
Sbjct: 244 AGLFIYFRNQKG 255


>gi|52630344 major histocompatibility complex, class II, DR beta 4
           precursor [Homo sapiens]
          Length = 266

 Score =  333 bits (853), Expect = 1e-91
 Identities = 164/252 (65%), Positives = 198/252 (78%)

Query: 7   LRIPGDLRVATVTLMLAMLSSLLAEGRDSPEDFVFQFKGMCYFTNGTERVRLVTRYIYNR 66
           L++PG   +A +T+ L +LSS LA   D+   F+ Q K  C+F NGTERV  + RYIYN+
Sbjct: 4   LKLPGGSCMAALTVTLTVLSSPLALAGDTQPRFLEQAKCECHFLNGTERVWNLIRYIYNQ 63

Query: 67  EEYARFDSDVGVYRAVTPQGRPDAEYWNSQKEVLEGTRAELDTVCRHNYEVAFRGILQRR 126
           EEYAR++SD+G Y+AVT  GRPDAEYWNSQK++LE  RAE+DT CR+NY V     +QRR
Sbjct: 64  EEYARYNSDLGEYQAVTELGRPDAEYWNSQKDLLERRRAEVDTYCRYNYGVVESFTVQRR 123

Query: 127 VEPTVTISPSRTEALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDWT 186
           V+P VT+ PS+T+ L HHNLLVCSV  FYPG I+VRWFRN QEE AGVVST LI+NGDWT
Sbjct: 124 VQPKVTVYPSKTQPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWT 183

Query: 187 FQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGVGGFVLGLIFLG 246
           FQ LVMLE  P+ G+VYTC VEHPS+ SP+TV+W A+SESAQSKMLSGVGGFVLGL+FLG
Sbjct: 184 FQTLVMLETVPRSGEVYTCQVEHPSMMSPLTVQWSARSESAQSKMLSGVGGFVLGLLFLG 243

Query: 247 LGLIIRQRSQKG 258
            GL I  R+QKG
Sbjct: 244 TGLFIYFRNQKG 255


>gi|239740745 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-7 beta chain isoform 1 [Homo sapiens]
          Length = 266

 Score =  332 bits (850), Expect = 3e-91
 Identities = 163/252 (64%), Positives = 196/252 (77%)

Query: 7   LRIPGDLRVATVTLMLAMLSSLLAEGRDSPEDFVFQFKGMCYFTNGTERVRLVTRYIYNR 66
           L++PG   +A +T+ L +LSS LA   D+   F++Q K  C+F NGTERV+ + R  YN+
Sbjct: 4   LKLPGGSCMAALTVTLMVLSSPLALAGDTQPRFLWQGKYKCHFFNGTERVQFLERLFYNQ 63

Query: 67  EEYARFDSDVGVYRAVTPQGRPDAEYWNSQKEVLEGTRAELDTVCRHNYEVAFRGILQRR 126
           EE+ RFDSDVG YRAVT  GRP AE WNSQK++LE  R ++DTVCRHNY V     +QRR
Sbjct: 64  EEFVRFDSDVGEYRAVTELGRPVAESWNSQKDILEDRRGQVDTVCRHNYGVGESFTVQRR 123

Query: 127 VEPTVTISPSRTEALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDWT 186
           V P VT+ P++T+ L HHNLLVCSV+ FYPG I+VRWFRN QEE AGVVST LI+NGDWT
Sbjct: 124 VHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWT 183

Query: 187 FQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGVGGFVLGLIFLG 246
           FQ LVMLE  P+ G+VYTC VEHPS+ SP+TVEWRA+SESAQSKMLSGVGGFVLGL+FLG
Sbjct: 184 FQTLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSESAQSKMLSGVGGFVLGLLFLG 243

Query: 247 LGLIIRQRSQKG 258
            GL I  R+QKG
Sbjct: 244 AGLFIYFRNQKG 255


>gi|239740695 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-7 beta chain isoform 1 [Homo sapiens]
          Length = 266

 Score =  332 bits (850), Expect = 3e-91
 Identities = 163/252 (64%), Positives = 196/252 (77%)

Query: 7   LRIPGDLRVATVTLMLAMLSSLLAEGRDSPEDFVFQFKGMCYFTNGTERVRLVTRYIYNR 66
           L++PG   +A +T+ L +LSS LA   D+   F++Q K  C+F NGTERV+ + R  YN+
Sbjct: 4   LKLPGGSCMAALTVTLMVLSSPLALAGDTQPRFLWQGKYKCHFFNGTERVQFLERLFYNQ 63

Query: 67  EEYARFDSDVGVYRAVTPQGRPDAEYWNSQKEVLEGTRAELDTVCRHNYEVAFRGILQRR 126
           EE+ RFDSDVG YRAVT  GRP AE WNSQK++LE  R ++DTVCRHNY V     +QRR
Sbjct: 64  EEFVRFDSDVGEYRAVTELGRPVAESWNSQKDILEDRRGQVDTVCRHNYGVGESFTVQRR 123

Query: 127 VEPTVTISPSRTEALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDWT 186
           V P VT+ P++T+ L HHNLLVCSV+ FYPG I+VRWFRN QEE AGVVST LI+NGDWT
Sbjct: 124 VHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWT 183

Query: 187 FQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGVGGFVLGLIFLG 246
           FQ LVMLE  P+ G+VYTC VEHPS+ SP+TVEWRA+SESAQSKMLSGVGGFVLGL+FLG
Sbjct: 184 FQTLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSESAQSKMLSGVGGFVLGLLFLG 243

Query: 247 LGLIIRQRSQKG 258
            GL I  R+QKG
Sbjct: 244 AGLFIYFRNQKG 255


>gi|239740853 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 3 isoform 2 [Homo sapiens]
          Length = 266

 Score =  331 bits (848), Expect = 4e-91
 Identities = 162/252 (64%), Positives = 194/252 (76%)

Query: 7   LRIPGDLRVATVTLMLAMLSSLLAEGRDSPEDFVFQFKGMCYFTNGTERVRLVTRYIYNR 66
           L++PG   +A +T+ L +LSS LA   D+   F+   K  C+F NGTERVR + R+ +N+
Sbjct: 4   LKLPGGSSLAALTVTLMVLSSRLAFAGDTRPRFLELLKSECHFFNGTERVRFLERHFHNQ 63

Query: 67  EEYARFDSDVGVYRAVTPQGRPDAEYWNSQKEVLEGTRAELDTVCRHNYEVAFRGILQRR 126
           EEYARFDSDVG YRAV   GRPDAEYWNSQK++LE  R ++D  CRHNY V     +QRR
Sbjct: 64  EEYARFDSDVGEYRAVRELGRPDAEYWNSQKDLLEQKRGQVDNYCRHNYGVGESFTVQRR 123

Query: 127 VEPTVTISPSRTEALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDWT 186
           V P VT+ P++T+ L HHNLLVCSV+ FYPG I+VRWFRN QEE AGVVST LI+NGDWT
Sbjct: 124 VHPQVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWT 183

Query: 187 FQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGVGGFVLGLIFLG 246
           FQ LVMLE  P+ G+VYTC VEHPS+ SP+TVEW A+SESAQSKMLSGVGGFVLGL+FLG
Sbjct: 184 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWSARSESAQSKMLSGVGGFVLGLLFLG 243

Query: 247 LGLIIRQRSQKG 258
            GL I  R+QKG
Sbjct: 244 AGLFIYFRNQKG 255


>gi|239748785 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-9 beta chain [Homo sapiens]
          Length = 266

 Score =  330 bits (846), Expect = 8e-91
 Identities = 167/252 (66%), Positives = 195/252 (77%)

Query: 7   LRIPGDLRVATVTLMLAMLSSLLAEGRDSPEDFVFQFKGMCYFTNGTERVRLVTRYIYNR 66
           L++PG   +A +T+ L +LSS LA   D+   F+ Q K  C+F NGTERVR + R IYN+
Sbjct: 4   LKLPGGSCMAALTVTLMVLSSPLALAGDTQPRFLKQDKFECHFFNGTERVRYLHRGIYNQ 63

Query: 67  EEYARFDSDVGVYRAVTPQGRPDAEYWNSQKEVLEGTRAELDTVCRHNYEVAFRGILQRR 126
           EE  RFDSDVG YRAVT  GRP AE WNSQK+ LE  RAE+DTVCRHNY V     +QRR
Sbjct: 64  EENVRFDSDVGEYRAVTELGRPVAESWNSQKDFLERRRAEVDTVCRHNYGVGESFTVQRR 123

Query: 127 VEPTVTISPSRTEALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDWT 186
           V P VT+ P++T+ L HHNLLVCSV+ FYPG I+VRWFRN QEE AGVVST LI+NGDWT
Sbjct: 124 VHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWT 183

Query: 187 FQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGVGGFVLGLIFLG 246
           FQ LVMLE  P+ G+VYTC VEHPS+ SP+TVEWRA+SESAQSKMLSGVGGFVLGL+FLG
Sbjct: 184 FQTLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSESAQSKMLSGVGGFVLGLLFLG 243

Query: 247 LGLIIRQRSQKG 258
            GL I  R+QKG
Sbjct: 244 AGLFIYFRNQKG 255


>gi|24797076 major histocompatibility complex, class II, DP beta 1
           precursor [Homo sapiens]
          Length = 258

 Score =  327 bits (838), Expect = 6e-90
 Identities = 159/251 (63%), Positives = 195/251 (77%), Gaps = 2/251 (0%)

Query: 7   LRIPGDLRVATVTLMLAMLSSLLAEGRDSPEDFVFQFKGMCYFTNGTERVRLVTRYIYNR 66
           L++    R   +T +L +L + + +GR +PE+++FQ +  CY  NGT+R   + RYIYNR
Sbjct: 4   LQVSAAPRTVALTALLMVLLTSVVQGRATPENYLFQGRQECYAFNGTQR--FLERYIYNR 61

Query: 67  EEYARFDSDVGVYRAVTPQGRPDAEYWNSQKEVLEGTRAELDTVCRHNYEVAFRGILQRR 126
           EE+ARFDSDVG +RAVT  GRP AEYWNSQK++LE  RA  D +CRHNYE+     LQRR
Sbjct: 62  EEFARFDSDVGEFRAVTELGRPAAEYWNSQKDILEEKRAVPDRMCRHNYELGGPMTLQRR 121

Query: 127 VEPTVTISPSRTEALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDWT 186
           V+P V +SPS+   L HHNLLVC VTDFYPG I+VRWF N QEETAGVVST LIRNGDWT
Sbjct: 122 VQPRVNVSPSKKGPLQHHNLLVCHVTDFYPGSIQVRWFLNGQEETAGVVSTNLIRNGDWT 181

Query: 187 FQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGVGGFVLGLIFLG 246
           FQILVMLEMTPQ+GDVYTC VEH SL SP+TVEW+AQS+SA+SK L+G GGFVLGLI  G
Sbjct: 182 FQILVMLEMTPQQGDVYTCQVEHTSLDSPVTVEWKAQSDSARSKTLTGAGGFVLGLIICG 241

Query: 247 LGLIIRQRSQK 257
           +G+ + +RS+K
Sbjct: 242 VGIFMHRRSKK 252


>gi|239740857 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 3 isoform 2 [Homo sapiens]
          Length = 266

 Score =  326 bits (836), Expect = 1e-89
 Identities = 162/252 (64%), Positives = 190/252 (75%)

Query: 7   LRIPGDLRVATVTLMLAMLSSLLAEGRDSPEDFVFQFKGMCYFTNGTERVRLVTRYIYNR 66
           LR+PG   +A +T+ L +LSS LA   D+   F+      C+F NGTERVR + RY +N+
Sbjct: 4   LRLPGGSCMAVLTVTLMVLSSPLALAGDTRPRFLEYSTSECHFFNGTERVRYLDRYFHNQ 63

Query: 67  EEYARFDSDVGVYRAVTPQGRPDAEYWNSQKEVLEGTRAELDTVCRHNYEVAFRGILQRR 126
           EE  RFDSDVG +RAVT  GRPDAEYWNSQK++LE  R  +D  CRHNY V     +QRR
Sbjct: 64  EENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQKRGRVDNYCRHNYGVVESFTVQRR 123

Query: 127 VEPTVTISPSRTEALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDWT 186
           V P VT+ PS+T+ L HHNLLVCSV+ FYPG I+VRWFRN QEE  GVVST LI NGDWT
Sbjct: 124 VHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNGDWT 183

Query: 187 FQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGVGGFVLGLIFLG 246
           FQ LVMLE  P+ G+VYTC VEHPS+ SP+TVEWRA+SESAQSKMLSGVGGFVLGL+FLG
Sbjct: 184 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLLFLG 243

Query: 247 LGLIIRQRSQKG 258
            GL I  R+QKG
Sbjct: 244 AGLFIYFRNQKG 255


>gi|239740855 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 3 isoform 1 [Homo sapiens]
          Length = 267

 Score =  326 bits (836), Expect = 1e-89
 Identities = 161/253 (63%), Positives = 195/253 (77%), Gaps = 1/253 (0%)

Query: 7   LRIPGDLRVATVTLMLAMLSSLLAEGRDSP-EDFVFQFKGMCYFTNGTERVRLVTRYIYN 65
           L++PG   +A +T+ L +LSS LA   D+  +  ++  K  C+F NGTERVR + R+ +N
Sbjct: 4   LKLPGGSSLAALTVTLMVLSSRLAFAGDTRRKSTLWLLKSECHFFNGTERVRFLERHFHN 63

Query: 66  REEYARFDSDVGVYRAVTPQGRPDAEYWNSQKEVLEGTRAELDTVCRHNYEVAFRGILQR 125
           +EEYARFDSDVG YRAV   GRPDAEYWNSQK++LE  R ++D  CRHNY V     +QR
Sbjct: 64  QEEYARFDSDVGEYRAVRELGRPDAEYWNSQKDLLEQKRGQVDNYCRHNYGVGESFTVQR 123

Query: 126 RVEPTVTISPSRTEALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDW 185
           RV P VT+ P++T+ L HHNLLVCSV+ FYPG I+VRWFRN QEE AGVVST LI+NGDW
Sbjct: 124 RVHPQVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDW 183

Query: 186 TFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGVGGFVLGLIFL 245
           TFQ LVMLE  P+ G+VYTC VEHPS+ SP+TVEW A+SESAQSKMLSGVGGFVLGL+FL
Sbjct: 184 TFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWSARSESAQSKMLSGVGGFVLGLLFL 243

Query: 246 GLGLIIRQRSQKG 258
           G GL I  R+QKG
Sbjct: 244 GAGLFIYFRNQKG 256


>gi|17986005 major histocompatibility complex, class II, DR beta 3
           precursor [Homo sapiens]
          Length = 266

 Score =  322 bits (824), Expect = 3e-88
 Identities = 160/252 (63%), Positives = 191/252 (75%)

Query: 7   LRIPGDLRVATVTLMLAMLSSLLAEGRDSPEDFVFQFKGMCYFTNGTERVRLVTRYIYNR 66
           L++PG   +A +T+ L +LSS LA   D+   F+   K  C+F NGTERVR + RY +N+
Sbjct: 4   LKLPGGSSLAALTVTLMVLSSRLAFAGDTRPRFLELRKSECHFFNGTERVRYLDRYFHNQ 63

Query: 67  EEYARFDSDVGVYRAVTPQGRPDAEYWNSQKEVLEGTRAELDTVCRHNYEVAFRGILQRR 126
           EE+ RFDSDVG YRAVT  GRP AE WNSQK++LE  R  +D  CRHNY V     +QRR
Sbjct: 64  EEFLRFDSDVGEYRAVTELGRPVAESWNSQKDLLEQKRGRVDNYCRHNYGVGESFTVQRR 123

Query: 127 VEPTVTISPSRTEALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDWT 186
           V P VT+ P++T+ L HHNLLVCSV+ FYPG I+VRWFRN QEE AGVVST LI+NGDWT
Sbjct: 124 VHPQVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWT 183

Query: 187 FQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGVGGFVLGLIFLG 246
           FQ LVMLE  P+ G+VYTC VEHPS+ S +TVEWRA+SESAQSKMLSGVGGFVLGL+FLG
Sbjct: 184 FQTLVMLETVPRSGEVYTCQVEHPSVTSALTVEWRARSESAQSKMLSGVGGFVLGLLFLG 243

Query: 247 LGLIIRQRSQKG 258
            GL I  R+QKG
Sbjct: 244 AGLFIYFRNQKG 255


>gi|239740859 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 3 isoform 1 [Homo sapiens]
          Length = 267

 Score =  320 bits (820), Expect = 8e-88
 Identities = 161/253 (63%), Positives = 188/253 (74%), Gaps = 1/253 (0%)

Query: 7   LRIPGDLRVATVTLMLAMLSSLLAEGRDSPEDFVFQFK-GMCYFTNGTERVRLVTRYIYN 65
           LR+PG   +A +T+ L +LSS LA   D+            C+F NGTERVR + RY +N
Sbjct: 4   LRLPGGSCMAVLTVTLMVLSSPLALAGDTRRKCTLWVPTSECHFFNGTERVRYLDRYFHN 63

Query: 66  REEYARFDSDVGVYRAVTPQGRPDAEYWNSQKEVLEGTRAELDTVCRHNYEVAFRGILQR 125
           +EE  RFDSDVG +RAVT  GRPDAEYWNSQK++LE  R  +D  CRHNY V     +QR
Sbjct: 64  QEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQKRGRVDNYCRHNYGVVESFTVQR 123

Query: 126 RVEPTVTISPSRTEALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDW 185
           RV P VT+ PS+T+ L HHNLLVCSV+ FYPG I+VRWFRN QEE  GVVST LI NGDW
Sbjct: 124 RVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNGDW 183

Query: 186 TFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGVGGFVLGLIFL 245
           TFQ LVMLE  P+ G+VYTC VEHPS+ SP+TVEWRA+SESAQSKMLSGVGGFVLGL+FL
Sbjct: 184 TFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSGVGGFVLGLLFL 243

Query: 246 GLGLIIRQRSQKG 258
           G GL I  R+QKG
Sbjct: 244 GAGLFIYFRNQKG 256


>gi|239758090 PREDICTED: major histocompatibility complex, class II,
           DR beta 4 [Homo sapiens]
          Length = 278

 Score =  315 bits (807), Expect = 3e-86
 Identities = 152/220 (69%), Positives = 179/220 (81%)

Query: 39  FVFQFKGMCYFTNGTERVRLVTRYIYNREEYARFDSDVGVYRAVTPQGRPDAEYWNSQKE 98
           F+ Q K  C+F NGTERV  + RYIYN+EEYAR++SD+G Y+AVT  GRPDAEYWNSQK+
Sbjct: 48  FLEQAKCECHFLNGTERVWNLIRYIYNQEEYARYNSDLGEYQAVTELGRPDAEYWNSQKD 107

Query: 99  VLEGTRAELDTVCRHNYEVAFRGILQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPGQ 158
           +LE  RAE+DT CR+NY V     +QRRV+P VT+ PS+T+ L HHNLLVCSV  FYPG 
Sbjct: 108 LLERRRAEVDTYCRYNYGVVESFTVQRRVQPKVTVYPSKTQPLQHHNLLVCSVNGFYPGS 167

Query: 159 IKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITV 218
           I+VRWFRN QEE AGVVST LI+NGDWTFQ LVMLE  P+ G+VYTC VEHPS+ SP+TV
Sbjct: 168 IEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSMMSPLTV 227

Query: 219 EWRAQSESAQSKMLSGVGGFVLGLIFLGLGLIIRQRSQKG 258
           +W A+SESAQSKMLSGVGGFVLGL+FLG GL I  R+QKG
Sbjct: 228 QWSARSESAQSKMLSGVGGFVLGLLFLGTGLFIYFRNQKG 267


>gi|239740743 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-7 beta chain isoform 2 [Homo sapiens]
          Length = 264

 Score =  315 bits (806), Expect = 3e-86
 Identities = 152/231 (65%), Positives = 181/231 (78%)

Query: 28  LLAEGRDSPEDFVFQFKGMCYFTNGTERVRLVTRYIYNREEYARFDSDVGVYRAVTPQGR 87
           +L +   +   F++Q K  C+F NGTERV+ + R  YN+EE+ RFDSDVG YRAVT  GR
Sbjct: 23  MLEKREHNASRFLWQGKYKCHFFNGTERVQFLERLFYNQEEFVRFDSDVGEYRAVTELGR 82

Query: 88  PDAEYWNSQKEVLEGTRAELDTVCRHNYEVAFRGILQRRVEPTVTISPSRTEALNHHNLL 147
           P AE WNSQK++LE  R ++DTVCRHNY V     +QRRV P VT+ P++T+ L HHNLL
Sbjct: 83  PVAESWNSQKDILEDRRGQVDTVCRHNYGVGESFTVQRRVHPEVTVYPAKTQPLQHHNLL 142

Query: 148 VCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHV 207
           VCSV+ FYPG I+VRWFRN QEE AGVVST LI+NGDWTFQ LVMLE  P+ G+VYTC V
Sbjct: 143 VCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQV 202

Query: 208 EHPSLQSPITVEWRAQSESAQSKMLSGVGGFVLGLIFLGLGLIIRQRSQKG 258
           EHPS+ SP+TVEWRA+SESAQSKMLSGVGGFVLGL+FLG GL I  R+QKG
Sbjct: 203 EHPSVMSPLTVEWRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKG 253


>gi|239740693 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-7 beta chain isoform 2 [Homo sapiens]
          Length = 264

 Score =  315 bits (806), Expect = 3e-86
 Identities = 152/231 (65%), Positives = 181/231 (78%)

Query: 28  LLAEGRDSPEDFVFQFKGMCYFTNGTERVRLVTRYIYNREEYARFDSDVGVYRAVTPQGR 87
           +L +   +   F++Q K  C+F NGTERV+ + R  YN+EE+ RFDSDVG YRAVT  GR
Sbjct: 23  MLEKREHNASRFLWQGKYKCHFFNGTERVQFLERLFYNQEEFVRFDSDVGEYRAVTELGR 82

Query: 88  PDAEYWNSQKEVLEGTRAELDTVCRHNYEVAFRGILQRRVEPTVTISPSRTEALNHHNLL 147
           P AE WNSQK++LE  R ++DTVCRHNY V     +QRRV P VT+ P++T+ L HHNLL
Sbjct: 83  PVAESWNSQKDILEDRRGQVDTVCRHNYGVGESFTVQRRVHPEVTVYPAKTQPLQHHNLL 142

Query: 148 VCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHV 207
           VCSV+ FYPG I+VRWFRN QEE AGVVST LI+NGDWTFQ LVMLE  P+ G+VYTC V
Sbjct: 143 VCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQV 202

Query: 208 EHPSLQSPITVEWRAQSESAQSKMLSGVGGFVLGLIFLGLGLIIRQRSQKG 258
           EHPS+ SP+TVEWRA+SESAQSKMLSGVGGFVLGL+FLG GL I  R+QKG
Sbjct: 203 EHPSVMSPLTVEWRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKG 253


>gi|4504403 major histocompatibility complex, class II, DO beta
           precursor [Homo sapiens]
          Length = 273

 Score =  300 bits (769), Expect = 6e-82
 Identities = 144/244 (59%), Positives = 183/244 (75%)

Query: 15  VATVTLMLAMLSSLLAEGRDSPEDFVFQFKGMCYFTNGTERVRLVTRYIYNREEYARFDS 74
           V  + + L  L S + +G DSPEDFV Q K  CYFTNGTE+V+ V R+I+N EEY RFDS
Sbjct: 9   VVALLVNLTRLDSSMTQGTDSPEDFVIQAKADCYFTNGTEKVQFVVRFIFNLEEYVRFDS 68

Query: 75  DVGVYRAVTPQGRPDAEYWNSQKEVLEGTRAELDTVCRHNYEVAFRGILQRRVEPTVTIS 134
           DVG++ A+T  G+PDAE WNS+ ++LE +R  +D VCRHNY +     + R+V+P VT+ 
Sbjct: 69  DVGMFVALTKLGQPDAEQWNSRLDLLERSRQAVDGVCRHNYRLGAPFTVGRKVQPEVTVY 128

Query: 135 PSRTEALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLE 194
           P RT  L+ HNLL CSVT FYPG IK++WF N QEE AGV+ST  IRNGDWTFQ +VMLE
Sbjct: 129 PERTPLLHQHNLLHCSVTGFYPGDIKIKWFLNGQEERAGVMSTGPIRNGDWTFQTVVMLE 188

Query: 195 MTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGVGGFVLGLIFLGLGLIIRQR 254
           MTP+ G VYTC V+H SL SP++VEWRAQSE +  KMLSG+  F+LGLIFL +G++I+ R
Sbjct: 189 MTPELGHVYTCLVDHSSLLSPVSVEWRAQSEYSWRKMLSGIAAFLLGLIFLLVGIVIQLR 248

Query: 255 SQKG 258
           +QKG
Sbjct: 249 AQKG 252


>gi|239758092 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-7 beta chain [Homo sapiens]
          Length = 253

 Score =  277 bits (708), Expect = 8e-75
 Identities = 147/252 (58%), Positives = 179/252 (71%), Gaps = 13/252 (5%)

Query: 7   LRIPGDLRVATVTLMLAMLSSLLAEGRDSPEDFVFQFKGMCYFTNGTERVRLVTRYIYNR 66
           L++PG   +A +T+ L +LSS LA   D+   F++Q K  C+F NGTERV+ + R  YN+
Sbjct: 4   LKLPGGSCMAALTVTLMVLSSPLALAGDTQPRFLWQGKYKCHFFNGTERVQFLERLFYNQ 63

Query: 67  EEYARFDSDVGVYRAVTPQGRPDAEYWNSQKEVLEGTRAELDTVCRHNYEVAFRGILQRR 126
           EE+ RFDSDVG YRAVT  GRP AE    Q ++L          C  +   +F       
Sbjct: 64  EEFVRFDSDVGEYRAVTELGRPVAEQKTKQGDLL----------CLPD---SFPLPCFLL 110

Query: 127 VEPTVTISPSRTEALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDWT 186
           V P VT+ P++T+ L HHNLLVCSV+ FYPG I+VRWFRN QEE AGVVST LI+NGDWT
Sbjct: 111 VHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWT 170

Query: 187 FQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGVGGFVLGLIFLG 246
           FQ LVMLE  P+ G+VYTC VEHPS+ SP+TVEWRA+SESAQSKMLSGVGGFVLGL+FLG
Sbjct: 171 FQTLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSESAQSKMLSGVGGFVLGLLFLG 230

Query: 247 LGLIIRQRSQKG 258
            GL I  R+QKG
Sbjct: 231 AGLFIYFRNQKG 242


>gi|169217452 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-4 beta chain, partial [Homo sapiens]
          Length = 223

 Score =  251 bits (642), Expect = 3e-67
 Identities = 120/179 (67%), Positives = 137/179 (76%)

Query: 36  PEDFVFQFKGMCYFTNGTERVRLVTRYIYNREEYARFDSDVGVYRAVTPQGRPDAEYWNS 95
           P  F+ Q K  C+F NGTERVR + RY Y++EEY RFDSDVG YRAVT  GRPDAEYWNS
Sbjct: 45  PARFLEQVKHECHFFNGTERVRFLDRYFYHQEEYVRFDSDVGEYRAVTELGRPDAEYWNS 104

Query: 96  QKEVLEGTRAELDTVCRHNYEVAFRGILQRRVEPTVTISPSRTEALNHHNLLVCSVTDFY 155
           QK++LE  RA +DT CRHNY V     +QRRV P VT+ P++T+ L HHNLLVCSV  FY
Sbjct: 105 QKDLLEQKRAAVDTYCRHNYGVGESFTVQRRVYPEVTVYPAKTQPLQHHNLLVCSVNGFY 164

Query: 156 PGQIKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQS 214
           PG I+VRWFRN QEE  GVVST LI+NGDWTFQ LVMLE  P+ G+VYTC VEHPSL S
Sbjct: 165 PGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSLTS 223


>gi|169168671 PREDICTED: similar to MHC class II antigen [Homo
           sapiens]
          Length = 241

 Score =  193 bits (491), Expect = 1e-49
 Identities = 97/179 (54%), Positives = 124/179 (69%), Gaps = 6/179 (3%)

Query: 86  GRPDAEYWNSQKEVLEGTRAELDTVCRHNYEVAFRGILQ------RRVEPTVTISPSRTE 139
           GRP AE+    +E+      +         ++  R +++        ++P  T+ P++TE
Sbjct: 52  GRPQAEHLPEAQELAPSAEWDSGLAAGRVLKLLLRALIRLHKKRFNELQPKGTMYPAKTE 111

Query: 140 ALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQR 199
            L+H N LVCSV+ FYPG I+VRWF+N QEE A VVS  LI+NGDWTFQ LVMLE  P+ 
Sbjct: 112 PLHHRNPLVCSVSGFYPGSIEVRWFQNGQEEKAAVVSIGLIQNGDWTFQTLVMLETVPRS 171

Query: 200 GDVYTCHVEHPSLQSPITVEWRAQSESAQSKMLSGVGGFVLGLIFLGLGLIIRQRSQKG 258
           G+VYTC VEHPS+ SP+TVEW A++ESAQSKMLSGVGGFVLGL+FLG GL I  R+QKG
Sbjct: 172 GEVYTCQVEHPSVTSPLTVEWSARTESAQSKMLSGVGGFVLGLLFLGTGLFIYFRNQKG 230


>gi|169168589 PREDICTED: similar to MHC class II antigen [Homo
           sapiens]
          Length = 140

 Score =  132 bits (331), Expect = 4e-31
 Identities = 67/120 (55%), Positives = 87/120 (72%)

Query: 7   LRIPGDLRVATVTLMLAMLSSLLAEGRDSPEDFVFQFKGMCYFTNGTERVRLVTRYIYNR 66
           L++PG   +A +T+ L +LSS LA   D+   F+ Q K  C+F NGTERV  + RYIYN+
Sbjct: 4   LKLPGGSCMAALTVTLTVLSSPLALAGDTQPRFLEQAKCECHFLNGTERVWNLIRYIYNQ 63

Query: 67  EEYARFDSDVGVYRAVTPQGRPDAEYWNSQKEVLEGTRAELDTVCRHNYEVAFRGILQRR 126
           EEYAR++SD+G Y+AVT  GRPDAEYWNSQK++LE  RAE+DT CR+NY V     +QRR
Sbjct: 64  EEYARYNSDLGEYQAVTELGRPDAEYWNSQKDLLERRRAEVDTYCRYNYGVVESFTVQRR 123


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.137    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,670,346
Number of Sequences: 37866
Number of extensions: 405890
Number of successful extensions: 967
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 847
Number of HSP's gapped (non-prelim): 116
length of query: 261
length of database: 18,247,518
effective HSP length: 100
effective length of query: 161
effective length of database: 14,460,918
effective search space: 2328207798
effective search space used: 2328207798
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.