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Search of human proteins with 4757826
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4757826 beta-2-microglobulin precursor [Homo sapiens]
(119 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4757826 beta-2-microglobulin precursor [Homo sapiens] 244 8e-66
gi|24797074 major histocompatibility complex, class II, DP alpha... 67 3e-12
gi|24797076 major histocompatibility complex, class II, DP beta ... 62 1e-10
gi|18426975 major histocompatibility complex, class II, DQ alpha... 62 1e-10
gi|113430811 PREDICTED: similar to major histocompatibility comp... 61 2e-10
gi|239748820 PREDICTED: hypothetical protein XP_002346811 [Homo ... 61 2e-10
gi|239740859 PREDICTED: similar to major histocompatibility comp... 61 2e-10
gi|239740857 PREDICTED: similar to major histocompatibility comp... 61 2e-10
gi|239740798 PREDICTED: similar to MHC class II antigen [Homo sa... 61 2e-10
gi|11095447 major histocompatibility complex, class II, DQ alpha... 60 5e-10
gi|169217612 PREDICTED: similar to major histocompatibility comp... 60 5e-10
gi|239740916 PREDICTED: similar to MHC HLA-DQ alpha [Homo sapiens] 60 5e-10
gi|239740861 PREDICTED: similar to major histocompatibility comp... 60 5e-10
gi|239740747 PREDICTED: similar to major histocompatibility comp... 60 5e-10
gi|239740697 PREDICTED: similar to major histocompatibility comp... 60 5e-10
gi|239513953 PREDICTED: similar to major histocompatibility comp... 60 5e-10
gi|52630344 major histocompatibility complex, class II, DR beta ... 59 1e-09
gi|239758090 PREDICTED: major histocompatibility complex, class ... 59 1e-09
gi|169218140 PREDICTED: similar to major histocompatibility comp... 59 1e-09
gi|239740855 PREDICTED: similar to major histocompatibility comp... 59 1e-09
gi|239740853 PREDICTED: similar to major histocompatibility comp... 59 1e-09
gi|4504399 major histocompatibility complex, class II, DM beta p... 58 1e-09
gi|239758092 PREDICTED: similar to HLA class II histocompatibili... 58 2e-09
gi|239748785 PREDICTED: similar to HLA class II histocompatibili... 58 2e-09
gi|239740745 PREDICTED: similar to HLA class II histocompatibili... 58 2e-09
gi|239740743 PREDICTED: similar to HLA class II histocompatibili... 58 2e-09
gi|239740695 PREDICTED: similar to HLA class II histocompatibili... 58 2e-09
gi|239740693 PREDICTED: similar to HLA class II histocompatibili... 58 2e-09
gi|155030211 major histocompatibility complex, class II, DR beta... 57 2e-09
gi|18641375 major histocompatibility complex, class II, DR beta ... 57 3e-09
>gi|4757826 beta-2-microglobulin precursor [Homo sapiens]
Length = 119
Score = 244 bits (624), Expect = 8e-66
Identities = 119/119 (100%), Positives = 119/119 (100%)
Query: 1 MSRSVALAVLALLSLSGLEAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLL 60
MSRSVALAVLALLSLSGLEAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLL
Sbjct: 1 MSRSVALAVLALLSLSGLEAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLL 60
Query: 61 KNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
KNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM
Sbjct: 61 KNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
>gi|24797074 major histocompatibility complex, class II, DP alpha 1
precursor [Homo sapiens]
Length = 260
Score = 67.0 bits (162), Expect = 3e-12
Identities = 35/99 (35%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
Query: 19 EAIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERI-EKVEHSDLSFS 77
+A P++ V+ + P E G+ N L C++ F P + V L NGE + E V S
Sbjct: 112 QATNDPPEVTVFPKEPVELGQPNTLICHIDKFFPPVLNVTWLCNGELVTEGVAESLFLPR 171
Query: 78 KDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWD 116
D+SF+ +Y F P+ +D Y CRV H L QP + W+
Sbjct: 172 TDYSFHKFHYLTFVPSAEDFYDCRVEHWGLDQPLLKHWE 210
>gi|24797076 major histocompatibility complex, class II, DP beta 1
precursor [Homo sapiens]
Length = 258
Score = 61.6 bits (148), Expect = 1e-10
Identities = 35/104 (33%), Positives = 51/104 (49%), Gaps = 3/104 (2%)
Query: 15 LSGLEAIQRT--PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNG-ERIEKVEH 71
L G +QR P++ V N L C+V+ F+P I+V NG E V
Sbjct: 112 LGGPMTLQRRVQPRVNVSPSKKGPLQHHNLLVCHVTDFYPGSIQVRWFLNGQEETAGVVS 171
Query: 72 SDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKW 115
++L + DW+F +L E TP + D Y C+V H +L P V+W
Sbjct: 172 TNLIRNGDWTFQILVMLEMTPQQGDVYTCQVEHTSLDSPVTVEW 215
>gi|18426975 major histocompatibility complex, class II, DQ alpha 1
precursor [Homo sapiens]
Length = 255
Score = 61.6 bits (148), Expect = 1e-10
Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 1/101 (0%)
Query: 20 AIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERI-EKVEHSDLSFSK 78
A P++ V+S+ P G+ N L C V P + + L NG+ + E V +
Sbjct: 108 ATNEVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKS 167
Query: 79 DWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
D SF+ + Y F P+ + Y C+V H L QP + W+ ++
Sbjct: 168 DHSFFKISYLTFLPSADEIYDCKVEHWGLDQPLLKHWEPEI 208
>gi|113430811 PREDICTED: similar to major histocompatibility
complex, class II, DQ alpha 1 [Homo sapiens]
Length = 255
Score = 60.8 bits (146), Expect = 2e-10
Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 1/101 (0%)
Query: 20 AIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERI-EKVEHSDLSFSK 78
A P++ V+S+ P G+ N L C V P + + L NG + E V +
Sbjct: 108 ATNEVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKS 167
Query: 79 DWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
D SF+ + Y F P++ + Y C+V H L +P + W+ ++
Sbjct: 168 DHSFFKISYLTFLPSDDEIYDCKVEHWGLDEPLLKHWEPEI 208
>gi|239748820 PREDICTED: hypothetical protein XP_002346811 [Homo
sapiens]
Length = 266
Score = 60.8 bits (146), Expect = 2e-10
Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEK-VEHSDLSFSKDWSFY 83
PK+ VY N L C VSGF+P IEV +NG+ + V + L + DW+F
Sbjct: 126 PKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNGDWTFQ 185
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKW 115
L E P + Y C+V H +++ P V+W
Sbjct: 186 TLVMLETVPRSGEVYTCQVEHPSVTSPLTVEW 217
>gi|239740859 PREDICTED: similar to major histocompatibility
complex, class II, DR beta 3 isoform 1 [Homo sapiens]
Length = 267
Score = 60.8 bits (146), Expect = 2e-10
Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEK-VEHSDLSFSKDWSFY 83
PK+ VY N L C VSGF+P IEV +NG+ + V + L + DW+F
Sbjct: 127 PKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNGDWTFQ 186
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKW 115
L E P + Y C+V H +++ P V+W
Sbjct: 187 TLVMLETVPRSGEVYTCQVEHPSVTSPLTVEW 218
>gi|239740857 PREDICTED: similar to major histocompatibility
complex, class II, DR beta 3 isoform 2 [Homo sapiens]
Length = 266
Score = 60.8 bits (146), Expect = 2e-10
Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEK-VEHSDLSFSKDWSFY 83
PK+ VY N L C VSGF+P IEV +NG+ + V + L + DW+F
Sbjct: 126 PKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKTGVVSTGLIHNGDWTFQ 185
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKW 115
L E P + Y C+V H +++ P V+W
Sbjct: 186 TLVMLETVPRSGEVYTCQVEHPSVTSPLTVEW 217
>gi|239740798 PREDICTED: similar to MHC class II antigen [Homo
sapiens]
Length = 255
Score = 60.8 bits (146), Expect = 2e-10
Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 1/101 (0%)
Query: 20 AIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERI-EKVEHSDLSFSK 78
A P++ V+S+ P G+ N L C V P + + L NG + E V +
Sbjct: 108 ATNEVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKS 167
Query: 79 DWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
D SF+ + Y F P++ + Y C+V H L +P + W+ ++
Sbjct: 168 DHSFFKISYLTFLPSDDEIYDCKVEHWGLDEPLLKHWEPEI 208
>gi|11095447 major histocompatibility complex, class II, DQ alpha 2
[Homo sapiens]
Length = 255
Score = 59.7 bits (143), Expect = 5e-10
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
Query: 20 AIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERI-EKVEHSDLSFSK 78
A P++ V+S+ P G+ N L C V P + + L NG + E V +
Sbjct: 108 ATNEVPEVTVFSKFPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKS 167
Query: 79 DWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
D SF+ + Y F P+ + Y C+V H L +P + W+ ++
Sbjct: 168 DHSFFKISYLTFLPSADEIYDCKVEHWGLDEPLLKHWEPEI 208
>gi|169217612 PREDICTED: similar to major histocompatibility
complex, class II, DQ alpha 1 isoform 1 [Homo sapiens]
Length = 254
Score = 59.7 bits (143), Expect = 5e-10
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
Query: 20 AIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERI-EKVEHSDLSFSK 78
A P++ V+S+ P G+ N L C V P + + L NG + E V +
Sbjct: 107 ATNEVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKS 166
Query: 79 DWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
D SF+ + Y F P+ + Y C+V H L +P + W+ ++
Sbjct: 167 DHSFFKISYLTFLPSADEIYDCKVEHWGLDEPLLKHWEPEI 207
>gi|239740916 PREDICTED: similar to MHC HLA-DQ alpha [Homo sapiens]
Length = 255
Score = 59.7 bits (143), Expect = 5e-10
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
Query: 20 AIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERI-EKVEHSDLSFSK 78
A P++ V+S+ P G+ N L C V P + + L NG + E V +
Sbjct: 108 ATNEVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKS 167
Query: 79 DWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
D SF+ + Y F P+ + Y C+V H L +P + W+ ++
Sbjct: 168 DHSFFKISYLTFLPSADEIYDCKVEHWGLDEPLLKHWEPEI 208
>gi|239740861 PREDICTED: similar to major histocompatibility
complex, class II, DQ alpha 1 [Homo sapiens]
Length = 254
Score = 59.7 bits (143), Expect = 5e-10
Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
Query: 20 AIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERI-EKVEHSDLSFSK 78
A P++ V+S+ P G+ N L C V P + + L NG + E V +
Sbjct: 107 ATNEVPEVTVFSKSPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKS 166
Query: 79 DWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
D SF+ + Y P+ ++ Y C+V H L +P + W+ ++
Sbjct: 167 DHSFFKISYLTLLPSAEESYDCKVEHWGLDKPLLKHWEPEI 207
>gi|239740747 PREDICTED: similar to major histocompatibility
complex, class II, DQ alpha 1 [Homo sapiens]
Length = 254
Score = 59.7 bits (143), Expect = 5e-10
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
Query: 20 AIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERI-EKVEHSDLSFSK 78
A P++ V+S+ P G+ N L C V P + + L NG + E V +
Sbjct: 107 ATNEVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKS 166
Query: 79 DWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
D SF+ + Y F P+ + Y C+V H L +P + W+ ++
Sbjct: 167 DHSFFKISYLTFLPSADEIYDCKVEHWGLDEPLLKHWEPEI 207
>gi|239740697 PREDICTED: similar to major histocompatibility
complex, class II, DQ alpha 1 [Homo sapiens]
Length = 254
Score = 59.7 bits (143), Expect = 5e-10
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
Query: 20 AIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERI-EKVEHSDLSFSK 78
A P++ V+S+ P G+ N L C V P + + L NG + E V +
Sbjct: 107 ATNEVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKS 166
Query: 79 DWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
D SF+ + Y F P+ + Y C+V H L +P + W+ ++
Sbjct: 167 DHSFFKISYLTFLPSADEIYDCKVEHWGLDEPLLKHWEPEI 207
>gi|239513953 PREDICTED: similar to major histocompatibility
complex, class II, DQ alpha 1 [Homo sapiens]
Length = 254
Score = 59.7 bits (143), Expect = 5e-10
Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
Query: 20 AIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERI-EKVEHSDLSFSK 78
A P++ V+S+ P G+ N L C V P + + L NG + E V +
Sbjct: 107 ATNEVPEVTVFSKSPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKS 166
Query: 79 DWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
D SF+ + Y P+ ++ Y C+V H L +P + W+ ++
Sbjct: 167 DHSFFKISYLTLLPSAEESYDCKVEHWGLDKPLLKHWEPEI 207
>gi|52630344 major histocompatibility complex, class II, DR beta 4
precursor [Homo sapiens]
Length = 266
Score = 58.5 bits (140), Expect = 1e-09
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEK-VEHSDLSFSKDWSFY 83
PK+ VY N L C V+GF+P IEV +NG+ + V + L + DW+F
Sbjct: 126 PKVTVYPSKTQPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQ 185
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKW 115
L E P + Y C+V H ++ P V+W
Sbjct: 186 TLVMLETVPRSGEVYTCQVEHPSMMSPLTVQW 217
>gi|239758090 PREDICTED: major histocompatibility complex, class II,
DR beta 4 [Homo sapiens]
Length = 278
Score = 58.5 bits (140), Expect = 1e-09
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEK-VEHSDLSFSKDWSFY 83
PK+ VY N L C V+GF+P IEV +NG+ + V + L + DW+F
Sbjct: 138 PKVTVYPSKTQPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQ 197
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKW 115
L E P + Y C+V H ++ P V+W
Sbjct: 198 TLVMLETVPRSGEVYTCQVEHPSMMSPLTVQW 229
>gi|169218140 PREDICTED: similar to major histocompatibility
complex, class II, DQ alpha 1, partial [Homo sapiens]
Length = 153
Score = 58.5 bits (140), Expect = 1e-09
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERI-EKVEHSDLSFSKDWSFY 83
P++ V+S+ P G+ N L C V P + + L NG + E V + D SF+
Sbjct: 11 PEVTVFSKSPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFF 70
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM 119
+ Y P+ ++ Y C+V H L +P + W+ ++
Sbjct: 71 KISYLTLLPSAEESYDCKVEHWGLDKPLLKHWEPEI 106
>gi|239740855 PREDICTED: similar to major histocompatibility
complex, class II, DR beta 3 isoform 1 [Homo sapiens]
Length = 267
Score = 58.5 bits (140), Expect = 1e-09
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEK-VEHSDLSFSKDWSFY 83
P++ VY N L C VSGF+P IEV +NG+ + V + L + DW+F
Sbjct: 127 PQVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQ 186
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKW 115
L E P + Y C+V H +++ P V+W
Sbjct: 187 TLVMLETVPRSGEVYTCQVEHPSVTSPLTVEW 218
>gi|239740853 PREDICTED: similar to major histocompatibility
complex, class II, DR beta 3 isoform 2 [Homo sapiens]
Length = 266
Score = 58.5 bits (140), Expect = 1e-09
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEK-VEHSDLSFSKDWSFY 83
P++ VY N L C VSGF+P IEV +NG+ + V + L + DW+F
Sbjct: 126 PQVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQ 185
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKW 115
L E P + Y C+V H +++ P V+W
Sbjct: 186 TLVMLETVPRSGEVYTCQVEHPSVTSPLTVEW 217
>gi|4504399 major histocompatibility complex, class II, DM beta
precursor [Homo sapiens]
Length = 263
Score = 58.2 bits (139), Expect = 1e-09
Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Query: 23 RTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERI--EKVEHSDLSFSKDW 80
R P +QV P + L CYV GF+P+++ + KNG+ + H + DW
Sbjct: 113 RPPSVQVAKTTPFNTREPVMLACYVWGFYPAEVTITWRKNGKLVMPHSSAHKTAQPNGDW 172
Query: 81 SFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKW 115
++ L + TP+ D Y C V H+ +P + W
Sbjct: 173 TYQTLSHLALTPSYGDTYTCVVEHIGAPEPILRDW 207
>gi|239758092 PREDICTED: similar to HLA class II histocompatibility
antigen, DRB1-7 beta chain [Homo sapiens]
Length = 253
Score = 57.8 bits (138), Expect = 2e-09
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEK-VEHSDLSFSKDWSFY 83
P++ VY N L C VSGF+P IEV +NG+ + V + L + DW+F
Sbjct: 113 PEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQ 172
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKW 115
L E P + Y C+V H ++ P V+W
Sbjct: 173 TLVMLETVPRSGEVYTCQVEHPSVMSPLTVEW 204
>gi|239748785 PREDICTED: similar to HLA class II histocompatibility
antigen, DRB1-9 beta chain [Homo sapiens]
Length = 266
Score = 57.8 bits (138), Expect = 2e-09
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEK-VEHSDLSFSKDWSFY 83
P++ VY N L C VSGF+P IEV +NG+ + V + L + DW+F
Sbjct: 126 PEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQ 185
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKW 115
L E P + Y C+V H ++ P V+W
Sbjct: 186 TLVMLETVPRSGEVYTCQVEHPSVMSPLTVEW 217
>gi|239740745 PREDICTED: similar to HLA class II histocompatibility
antigen, DRB1-7 beta chain isoform 1 [Homo sapiens]
Length = 266
Score = 57.8 bits (138), Expect = 2e-09
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEK-VEHSDLSFSKDWSFY 83
P++ VY N L C VSGF+P IEV +NG+ + V + L + DW+F
Sbjct: 126 PEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQ 185
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKW 115
L E P + Y C+V H ++ P V+W
Sbjct: 186 TLVMLETVPRSGEVYTCQVEHPSVMSPLTVEW 217
>gi|239740743 PREDICTED: similar to HLA class II histocompatibility
antigen, DRB1-7 beta chain isoform 2 [Homo sapiens]
Length = 264
Score = 57.8 bits (138), Expect = 2e-09
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEK-VEHSDLSFSKDWSFY 83
P++ VY N L C VSGF+P IEV +NG+ + V + L + DW+F
Sbjct: 124 PEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQ 183
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKW 115
L E P + Y C+V H ++ P V+W
Sbjct: 184 TLVMLETVPRSGEVYTCQVEHPSVMSPLTVEW 215
>gi|239740695 PREDICTED: similar to HLA class II histocompatibility
antigen, DRB1-7 beta chain isoform 1 [Homo sapiens]
Length = 266
Score = 57.8 bits (138), Expect = 2e-09
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEK-VEHSDLSFSKDWSFY 83
P++ VY N L C VSGF+P IEV +NG+ + V + L + DW+F
Sbjct: 126 PEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQ 185
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKW 115
L E P + Y C+V H ++ P V+W
Sbjct: 186 TLVMLETVPRSGEVYTCQVEHPSVMSPLTVEW 217
>gi|239740693 PREDICTED: similar to HLA class II histocompatibility
antigen, DRB1-7 beta chain isoform 2 [Homo sapiens]
Length = 264
Score = 57.8 bits (138), Expect = 2e-09
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEK-VEHSDLSFSKDWSFY 83
P++ VY N L C VSGF+P IEV +NG+ + V + L + DW+F
Sbjct: 124 PEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQ 183
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKW 115
L E P + Y C+V H ++ P V+W
Sbjct: 184 TLVMLETVPRSGEVYTCQVEHPSVMSPLTVEW 215
>gi|155030211 major histocompatibility complex, class II, DR beta 1
precursor [Homo sapiens]
Length = 266
Score = 57.4 bits (137), Expect = 2e-09
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEK-VEHSDLSFSKDWSFY 83
PK+ VY N L C VSGF+P IEV NG+ + + + L + DW+F
Sbjct: 126 PKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFLNGQEEKAGMVSTGLIQNGDWTFQ 185
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKW 115
L E P + Y C+V H +++ P V+W
Sbjct: 186 TLVMLETVPRSGEVYTCQVEHPSVTSPLTVEW 217
>gi|18641375 major histocompatibility complex, class II, DR beta 5
precursor [Homo sapiens]
Length = 266
Score = 57.0 bits (136), Expect = 3e-09
Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 25 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEK-VEHSDLSFSKDWSFY 83
PK+ VY N L C V+GF+P IEV +N + + V + L + DW+F
Sbjct: 126 PKVTVYPARTQTLQHHNLLVCSVNGFYPGSIEVRWFRNSQEEKAGVVSTGLIQNGDWTFQ 185
Query: 84 LLYYTEFTPTEKDEYACRVNHVTLSQPKIVKW 115
L E P + Y C+V H +++ P V+W
Sbjct: 186 TLVMLETVPRSGEVYTCQVEHPSVTSPLTVEW 217
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.133 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,623,048
Number of Sequences: 37866
Number of extensions: 191859
Number of successful extensions: 502
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 356
Number of HSP's gapped (non-prelim): 122
length of query: 119
length of database: 18,247,518
effective HSP length: 88
effective length of query: 31
effective length of database: 14,915,310
effective search space: 462374610
effective search space used: 462374610
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.