Guide to the Human Genome
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Name: SFRS12IP1 Sequence: fasta or formatted (155aa) NCBI GI: 27883882
Description:

P18SRP protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             1.9          3           1
 C cysteine            2.6          4           1
 D aspartate           4.5          7           1
 E glutamate          12.9         20           4
 F phenylalanine       1.9          3           1
 G glycine             3.2          5           1
 H histidine           2.6          4           2
 I isoleucine          1.9          3           1
 K lysine             26.5         41           3
 L leucine             4.5          7           1
 M methionine          0.6          1           1
 N asparagine          3.9          6           1
 P proline             2.6          4           1
 Q glutamine           3.2          5           1
 R arginine            5.8          9           1
 S serine             12.9         20           4
 T threonine           3.2          5           1
 V valine              3.2          5           1
 W tryptophan          0.0          0           0
 Y tyrosine            1.9          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   P18SRP protein 
NKAP                  0.146   NFKB activating protein 
FAM133A               0.146   hypothetical protein LOC286499 
LOC100294364          0.139   PREDICTED: hypothetical protein 
LOC100294088          0.136   PREDICTED: hypothetical protein, partial 
LOC100133599          0.136   PREDICTED: hypothetical protein 
LOC100133599          0.125   PREDICTED: hypothetical protein 
NKAPL                 0.125   NFKB activating protein-like 
LOC100133698          0.125   PREDICTED: hypothetical protein 
FAM133B               0.122   hypothetical protein LOC257415 isoform 2 
FAM133B               0.122   hypothetical protein LOC257415 isoform 1 
SFRS12                0.118   splicing factor, arginine/serine-rich 12 isoform a ...
SFRS12                0.118   splicing factor, arginine/serine-rich 12 isoform b [...
CIR1                  0.115   CBF1 interacting corepressor 
MAP1B                 0.115   microtubule-associated protein 1B 
ZCCHC17               0.111   zinc finger, CCHC domain containing 17 
PRPF40A               0.108   formin binding protein 3 
PPIG                  0.105   peptidylprolyl isomerase G 
AP3D1                 0.101   adaptor-related protein complex 3, delta 1 subunit ...
MAP4K4                0.101   mitogen-activated protein kinase kinase kinase kinas...
MAP4K4                0.101   mitogen-activated protein kinase kinase kinase kinas...
MAP4K4                0.101   mitogen-activated protein kinase kinase kinase kinas...
CHAF1A                0.098   chromatin assembly factor 1, subunit A (p150) 
RP9                   0.098   retinitis pigmentosa 9 
SSRP1                 0.094   structure specific recognition protein 1 
CNGA1                 0.094   cyclic nucleotide gated channel alpha 1 isoform 1 [...
CNGA1                 0.094   cyclic nucleotide gated channel alpha 1 isoform 2 [H...
WDR87                 0.094   NYD-SP11 protein 
ZRANB2                0.094   zinc finger protein 265 isoform 1 
ZRANB2                0.094   zinc finger protein 265 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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