Guide to the Human Genome
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Name: LOC100133698 Sequence: fasta or formatted (248aa) NCBI GI: 239750213
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0         15           3
 C cysteine            0.8          2           1
 D aspartate           2.8          7           1
 E glutamate          10.5         26           2
 F phenylalanine       1.2          3           1
 G glycine             6.5         16           1
 H histidine           1.2          3           1
 I isoleucine          2.0          5           1
 K lysine             25.8         64          15
 L leucine             4.0         10           1
 M methionine          3.2          8           1
 N asparagine          1.2          3           1
 P proline             2.0          5           1
 Q glutamine           2.0          5           1
 R arginine            3.2          8           1
 S serine              7.7         19           3
 T threonine          12.5         31           6
 V valine              5.2         13           2
 W tryptophan          1.6          4           1
 Y tyrosine            0.4          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100294088          0.112   PREDICTED: hypothetical protein, partial 
LOC100133599          0.097   PREDICTED: hypothetical protein 
SFRS12                0.097   splicing factor, arginine/serine-rich 12 isoform a ...
SFRS12                0.097   splicing factor, arginine/serine-rich 12 isoform b [...
LOC100133599          0.097   PREDICTED: hypothetical protein 
LOC100294364          0.086   PREDICTED: hypothetical protein 
BAT2D1                0.086   HBxAg transactivated protein 2 
LOC100131202          0.086   PREDICTED: hypothetical protein 
LOC100286959          0.082   PREDICTED: hypothetical protein XP_002343921 
MAP1B                 0.080   microtubule-associated protein 1B 
EIF5B                 0.080   eukaryotic translation initiation factor 5B 
RBM25                 0.080   RNA binding motif protein 25 
TRDN                  0.078   triadin 
SFRS12IP1             0.078   P18SRP protein 
NKAP                  0.075   NFKB activating protein 
FAM133A               0.075   hypothetical protein LOC286499 
ARL6IP4               0.073   SRp25 nuclear protein isoform 4 
ARL6IP4               0.073   SRp25 nuclear protein isoform 2 
AP3D1                 0.073   adaptor-related protein complex 3, delta 1 subunit ...
NKAPL                 0.073   NFKB activating protein-like 
PPIG                  0.069   peptidylprolyl isomerase G 
FAM133B               0.069   hypothetical protein LOC257415 isoform 2 
FAM133B               0.069   hypothetical protein LOC257415 isoform 1 
SFRS11                0.067   splicing factor, arginine/serine-rich 11 
TAF3                  0.067   RNA polymerase II transcription factor TAFII140 [Ho...
ZFC3H1                0.065   proline/serine-rich coiled-coil 2 
CYLC2                 0.065   cylicin 2 
LOC100131202          0.065   PREDICTED: hypothetical protein 
ARL6IP4               0.065   SRp25 nuclear protein isoform 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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