SSRP1 29513

Name: SSRP1	Sequence: fasta or formatted (709aa)		NCBI GI: 4507241
Description: structure specific recognition protein 1		Referenced in: Centromere Proteins Nonhistone Chromosomal Proteins RNA Polymerase and General Transcription Factors
Composition: Amino acid Percentage Count Longest homopolymer A alanine 4.4 31 1 C cysteine 0.8 6 1 D aspartate 6.9 49 2 E glutamate 10.4 74 4 F phenylalanine 4.9 35 2 G glycine 6.6 47 2 H histidine 1.8 13 1 I isoleucine 4.1 29 2 K lysine 10.7 76 5 L leucine 6.8 48 2 M methionine 2.4 17 1 N asparagine 3.9 28 1 P proline 3.5 25 2 Q glutamine 3.1 22 1 R arginine 6.1 43 3 S serine 10.2 72 4 T threonine 4.5 32 4 V valine 4.8 34 1 W tryptophan 0.8 6 1 Y tyrosine 3.1 22 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 structure specific recognition protein 1 HMGB1 0.049 high-mobility group box 1 HMGB2 0.049 high-mobility group box 2 HMGB2 0.049 high-mobility group box 2 HMGB2 0.049 high-mobility group box 2 HMGB1L1 0.046 high-mobility group box 1-like 1 LOC203510 0.044 PREDICTED: similar to hCG1644442 LOC203510 0.044 PREDICTED: similar to hCG1644442 LOC203510 0.044 PREDICTED: hypothetical protein LOC203510 LOC645490 0.043 PREDICTED: similar to hCG1991922 HMGB3 0.043 high-mobility group box 3 LOC645490 0.042 PREDICTED: similar to hCG1991922 LOC645490 0.041 PREDICTED: similar to hCG1991922 LOC729595 0.041 PREDICTED: similar to high mobility group box 3 iso... LOC729595 0.041 PREDICTED: similar to high mobility group box 3 [Ho... LOC729595 0.041 PREDICTED: similar to high mobility group box 3 [Ho... LOC729595 0.041 PREDICTED: similar to high mobility group box 3 iso... LOC646993 0.039 PREDICTED: similar to high mobility group box 3 [Ho... LOC646993 0.039 PREDICTED: similar to high mobility group box 3 [Ho... LOC646993 0.039 PREDICTED: similar to high mobility group box 3 [Ho... SP100 0.039 nuclear antigen Sp100 isoform 2 TOX3 0.039 TOX high mobility group box family member 3 isoform... TOX3 0.039 TOX high mobility group box family member 3 isoform... TOX2 0.039 TOX high mobility group box family member 2 isoform... TOX2 0.039 TOX high mobility group box family member 2 isoform... TOX2 0.039 TOX high mobility group box family member 2 isoform ... LOC644129 0.038 PREDICTED: similar to hCG1647425 LOC441795 0.037 PREDICTED: high mobility group protein B3-like prot... LOC441795 0.037 PREDICTED: high mobility group protein B3-like prot... TOX 0.036 thymus high mobility group box protein TOX Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.