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Search of human proteins with 24497540
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|24497540 homeobox C4 [Homo sapiens]
(264 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|24497538 homeobox C4 [Homo sapiens] 563 e-161
gi|24497540 homeobox C4 [Homo sapiens] 563 e-161
gi|13273315 homeobox B4 [Homo sapiens] 280 9e-76
gi|23397672 homeobox D4 [Homo sapiens] 261 4e-70
gi|148613882 homeobox A4 [Homo sapiens] 226 1e-59
gi|239750326 PREDICTED: similar to Homeobox protein Hox-C4 [Homo... 167 7e-42
gi|24497517 homeobox A5 [Homo sapiens] 155 3e-38
gi|4504469 homeobox B5 [Homo sapiens] 152 3e-37
gi|11321638 homeobox C5 [Homo sapiens] 136 2e-32
gi|23503237 homeobox B6 [Homo sapiens] 132 3e-31
gi|24497556 homeobox A7 [Homo sapiens] 129 2e-30
gi|85068580 homeobox B7 [Homo sapiens] 126 2e-29
gi|13489077 homeobox A6 [Homo sapiens] 122 4e-28
gi|24497513 homeobox A3 isoform a [Homo sapiens] 116 2e-26
gi|13562112 homeobox A3 isoform a [Homo sapiens] 116 2e-26
gi|24497544 homeobox C6 isoform 2 [Homo sapiens] 115 3e-26
gi|4758554 homeobox C6 isoform 1 [Homo sapiens] 115 3e-26
gi|19923391 homeobox D3 [Homo sapiens] 112 3e-25
gi|13273317 homeobox B8 [Homo sapiens] 110 1e-24
gi|121114296 caudal type homeobox 1 [Homo sapiens] 109 2e-24
gi|4504465 homeobox B2 [Homo sapiens] 109 3e-24
gi|84570137 homeobox B3 [Homo sapiens] 108 5e-24
gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens] 106 2e-23
gi|15029506 homeobox D8 [Homo sapiens] 102 4e-22
gi|5031761 homeobox A1 isoform a [Homo sapiens] 99 5e-21
gi|24497526 homeobox B1 [Homo sapiens] 98 6e-21
gi|10140847 homeobox A2 [Homo sapiens] 96 2e-20
gi|169636435 caudal type homeobox 2 [Homo sapiens] 96 3e-20
gi|12056969 homeobox C8 [Homo sapiens] 96 3e-20
gi|18959212 GS homeobox 2 [Homo sapiens] 95 5e-20
>gi|24497538 homeobox C4 [Homo sapiens]
Length = 264
Score = 563 bits (1450), Expect = e-161
Identities = 264/264 (100%), Positives = 264/264 (100%)
Query: 1 MIMSSYLMDSNYIDPKFPPCEEYSQNSYIPEHSPEYYGRTRESGFQHHHQELYPPPPPRP 60
MIMSSYLMDSNYIDPKFPPCEEYSQNSYIPEHSPEYYGRTRESGFQHHHQELYPPPPPRP
Sbjct: 1 MIMSSYLMDSNYIDPKFPPCEEYSQNSYIPEHSPEYYGRTRESGFQHHHQELYPPPPPRP 60
Query: 61 SYPERQYSCTSLQGPGNSRGHGPAQAGHHHPEKSQSLCEPAPLSGASASPSPAPPACSQP 120
SYPERQYSCTSLQGPGNSRGHGPAQAGHHHPEKSQSLCEPAPLSGASASPSPAPPACSQP
Sbjct: 61 SYPERQYSCTSLQGPGNSRGHGPAQAGHHHPEKSQSLCEPAPLSGASASPSPAPPACSQP 120
Query: 121 APDHPSSAASKQPIVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLELEKEFHYNRY 180
APDHPSSAASKQPIVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLELEKEFHYNRY
Sbjct: 121 APDHPSSAASKQPIVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLELEKEFHYNRY 180
Query: 181 LTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAAPSTLSAATP 240
LTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAAPSTLSAATP
Sbjct: 181 LTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAAPSTLSAATP 240
Query: 241 GTSEDHSQSATPPEQQRAEDITRL 264
GTSEDHSQSATPPEQQRAEDITRL
Sbjct: 241 GTSEDHSQSATPPEQQRAEDITRL 264
>gi|24497540 homeobox C4 [Homo sapiens]
Length = 264
Score = 563 bits (1450), Expect = e-161
Identities = 264/264 (100%), Positives = 264/264 (100%)
Query: 1 MIMSSYLMDSNYIDPKFPPCEEYSQNSYIPEHSPEYYGRTRESGFQHHHQELYPPPPPRP 60
MIMSSYLMDSNYIDPKFPPCEEYSQNSYIPEHSPEYYGRTRESGFQHHHQELYPPPPPRP
Sbjct: 1 MIMSSYLMDSNYIDPKFPPCEEYSQNSYIPEHSPEYYGRTRESGFQHHHQELYPPPPPRP 60
Query: 61 SYPERQYSCTSLQGPGNSRGHGPAQAGHHHPEKSQSLCEPAPLSGASASPSPAPPACSQP 120
SYPERQYSCTSLQGPGNSRGHGPAQAGHHHPEKSQSLCEPAPLSGASASPSPAPPACSQP
Sbjct: 61 SYPERQYSCTSLQGPGNSRGHGPAQAGHHHPEKSQSLCEPAPLSGASASPSPAPPACSQP 120
Query: 121 APDHPSSAASKQPIVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLELEKEFHYNRY 180
APDHPSSAASKQPIVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLELEKEFHYNRY
Sbjct: 121 APDHPSSAASKQPIVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLELEKEFHYNRY 180
Query: 181 LTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAAPSTLSAATP 240
LTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAAPSTLSAATP
Sbjct: 181 LTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAAPSTLSAATP 240
Query: 241 GTSEDHSQSATPPEQQRAEDITRL 264
GTSEDHSQSATPPEQQRAEDITRL
Sbjct: 241 GTSEDHSQSATPPEQQRAEDITRL 264
>gi|13273315 homeobox B4 [Homo sapiens]
Length = 251
Score = 280 bits (716), Expect = 9e-76
Identities = 151/252 (59%), Positives = 173/252 (68%), Gaps = 36/252 (14%)
Query: 1 MIMSSYLMDSNYIDPKFPPCEEYSQNSYIP-EHSPEYY--GRTRESGFQHHH-------- 49
M MSS+L++SNY+DPKFPPCEEYSQ+ Y+P +HSP YY G+ RES FQ
Sbjct: 1 MAMSSFLINSNYVDPKFPPCEEYSQSDYLPSDHSPGYYAGGQRRESSFQPEAGFGRRAAC 60
Query: 50 --------QELYPPPPPRPSYPERQYSCTSLQGPGNS-RGHGPAQAGHHHPEKSQSLCEP 100
++ PPPPP P P PG S R P AG PE Q CE
Sbjct: 61 TVQRYAACRDPGPPPPPPPPPPPPP-------PPGLSPRAPAPPPAGALLPEPGQR-CE- 111
Query: 101 APLSGASASPSPAPPACSQ-PAPDHPSSAASKQPIVYPWMKKIHVSTVNPNYNGGEPKRS 159
+ S SP PP C+Q P PS +A K+P+VYPWM+K+HVSTVNPNY GGEPKRS
Sbjct: 112 ------AVSSSPPPPPCAQNPLHPSPSHSACKEPVVYPWMRKVHVSTVNPNYAGGEPKRS 165
Query: 160 RTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPN 219
RTAYTRQQVLELEKEFHYNRYLTRRRR+EIAH+LCLSERQIKIWFQNRRMKWKKDH+LPN
Sbjct: 166 RTAYTRQQVLELEKEFHYNRYLTRRRRVEIAHALCLSERQIKIWFQNRRMKWKKDHKLPN 225
Query: 220 TKVRSAPPAGAA 231
TK+RS AG+A
Sbjct: 226 TKIRSGGAAGSA 237
>gi|23397672 homeobox D4 [Homo sapiens]
Length = 255
Score = 261 bits (667), Expect = 4e-70
Identities = 147/271 (54%), Positives = 179/271 (66%), Gaps = 23/271 (8%)
Query: 1 MIMSSYLMDSNYIDPKFPPCEEYSQNSYIPEHSPEYYGRTRESGFQHHHQELYPPPPPRP 60
M+MSSY+++S Y+DPKFPPCEEY Q Y+ E +YYG + G LYP RP
Sbjct: 1 MVMSSYMVNSKYVDPKFPPCEEYLQGGYLGEQGADYYGGGAQ-GADFQPPGLYP----RP 55
Query: 61 SYPERQYSCTSLQGPGNS---RGHG--PAQAGHHHPEKSQSLCEPAPLSGASASPSPAPP 115
+ E+ + + GPG++ RGHG P G H+ + PAP + A P P
Sbjct: 56 DFGEQPFGGSG-PGPGSALPARGHGQEPGGPGGHYAAPGEPC--PAPPAPPPA-PLPGAR 111
Query: 116 ACSQPAPDHP-SSAASKQP-IVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLELEK 173
A SQ P P S A KQP +VYPWMKK+HV++VNPNY GGEPKRSRTAYTRQQVLELEK
Sbjct: 112 AYSQSDPKQPPSGTALKQPAVVYPWMKKVHVNSVNPNYTGGEPKRSRTAYTRQQVLELEK 171
Query: 174 EFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAAPS 233
EFH+NRYLTRRRRIEIAH+LCLSERQIKIWFQNRRMKWKKDH+LPNTK RS+ S
Sbjct: 172 EFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKKDHKLPNTKGRSS-------S 224
Query: 234 TLSAATPGTSEDHSQSATPPEQQRAEDITRL 264
+ S+++ +S SQ P + D+T L
Sbjct: 225 SSSSSSCSSSVAPSQHLQPMAKDHHTDLTTL 255
>gi|148613882 homeobox A4 [Homo sapiens]
Length = 320
Score = 226 bits (577), Expect = 1e-59
Identities = 136/311 (43%), Positives = 165/311 (53%), Gaps = 64/311 (20%)
Query: 1 MIMSSYLMDSNYIDPKFPPCEEYSQNS------------------------YIPEHSPEY 36
M MSS+L++SNYI+PKFPP EEY+Q+S ++P P+
Sbjct: 1 MTMSSFLINSNYIEPKFPPFEEYAQHSGSGGADGGPGGGPGYQQPPAPPTQHLPLQQPQL 60
Query: 37 Y----GRTRESGFQHHHQELYPPPPPRPSYPERQYSCTSLQ-------GPGN-------- 77
GR + + P P YP + T+ PG
Sbjct: 61 PHAGGGREPTASYYAPRTAREPAYPAAALYPAHGAADTAYPYGYRGGASPGRPPQPEQPP 120
Query: 78 SRGHGPAQAGHHH----------------PEKSQSLCEPAPLSGASASPSPAPPACSQPA 121
++ GPA H P + CE AP + + AP A
Sbjct: 121 AQAKGPAHGLHASHVLQPQLPPPLQPRAVPPAAPRRCEAAPATPGVPAGGSAPACPLLLA 180
Query: 122 PDHPSSAASKQPIVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLELEKEFHYNRYL 181
P K+P+VYPWMKKIHVS VNP+YNGGEPKRSRTAYTRQQVLELEKEFH+NRYL
Sbjct: 181 DKSPLGLKGKEPVVYPWMKKIHVSAVNPSYNGGEPKRSRTAYTRQQVLELEKEFHFNRYL 240
Query: 182 TRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAAPSTLSAATPG 241
TRRRRIEIAH+LCLSERQ+KIWFQNRRMKWKKDH+LPNTK+RS+ A A SA PG
Sbjct: 241 TRRRRIEIAHTLCLSERQVKIWFQNRRMKWKKDHKLPNTKMRSSNSASA-----SAGPPG 295
Query: 242 TSEDHSQSATP 252
++ S P
Sbjct: 296 KAQTQSPHLHP 306
>gi|239750326 PREDICTED: similar to Homeobox protein Hox-C4 [Homo
sapiens]
Length = 105
Score = 167 bits (424), Expect = 7e-42
Identities = 81/81 (100%), Positives = 81/81 (100%)
Query: 184 RRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAAPSTLSAATPGTS 243
RRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAAPSTLSAATPGTS
Sbjct: 25 RRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAAPSTLSAATPGTS 84
Query: 244 EDHSQSATPPEQQRAEDITRL 264
EDHSQSATPPEQQRAEDITRL
Sbjct: 85 EDHSQSATPPEQQRAEDITRL 105
>gi|24497517 homeobox A5 [Homo sapiens]
Length = 270
Score = 155 bits (392), Expect = 3e-38
Identities = 87/179 (48%), Positives = 109/179 (60%), Gaps = 17/179 (9%)
Query: 54 PPPPPRPSYPERQYSCTSLQ-GPGNSRGHGPAQA-----GHHHPEKSQSLCEPAPLSGAS 107
P P P P C+++ PG+ HG + G S + + AS
Sbjct: 96 PQPDPLP--------CSAVAPSPGSDSHHGGKNSLSNSSGASADAGSTHISSREGVGTAS 147
Query: 108 ASPSPAPPACSQP-APDHPSSAASKQPIVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQ 166
+ AP + Q A PS A QP +YPWM+K+H+S + N G E KR+RTAYTR
Sbjct: 148 GAEEDAPASSEQASAQSEPSPAPPAQPQIYPWMRKLHIS--HDNIGGPEGKRARTAYTRY 205
Query: 167 QVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSA 225
Q LELEKEFH+NRYLTRRRRIEIAH+LCLSERQIKIWFQNRRMKWKKD++L + + +A
Sbjct: 206 QTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKLKSMSMAAA 264
>gi|4504469 homeobox B5 [Homo sapiens]
Length = 269
Score = 152 bits (384), Expect = 3e-37
Identities = 94/216 (43%), Positives = 123/216 (56%), Gaps = 31/216 (14%)
Query: 33 SPEYYGRTRESGFQHHHQELYPPPPPRPSYPERQYSCTSLQGP-------GNSRGHGP-- 83
S ++G ES +P P P + + SC SL P G+S G P
Sbjct: 62 SSSHFGAVGESS------RAFPAPAQEPRFRQAASSC-SLSSPESLPCTNGDSHGAKPSA 114
Query: 84 ---------AQAGHHHPEKSQSLCEPAPLSGASASPSPAPPACSQPAPDHPSSAA--SKQ 132
A + + E ++ P AS SP+ A +QP P S+AA +
Sbjct: 115 SSPSDQATSASSSANFTEIDEASASSEPEEAASQLSSPSL-ARAQPEPMATSTAAPEGQT 173
Query: 133 PIVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHS 192
P ++PWM+K+H+S + G + KR+RTAYTR Q LELEKEFH+NRYLTRRRRIEIAH+
Sbjct: 174 PQIFPWMRKLHISH---DMTGPDGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHA 230
Query: 193 LCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPA 228
LCLSERQIKIWFQNRRMKWKKD++L + + +A A
Sbjct: 231 LCLSERQIKIWFQNRRMKWKKDNKLKSMSLATAGSA 266
>gi|11321638 homeobox C5 [Homo sapiens]
Length = 222
Score = 136 bits (342), Expect = 2e-32
Identities = 95/241 (39%), Positives = 121/241 (50%), Gaps = 51/241 (21%)
Query: 3 MSSYLMDSNYID-PKFPP-----CEEYSQNSYIPEHSPEYYGRTRESGFQHHHQELYPPP 56
MSSY+ +S Y P P C Y S + Y G F PPP
Sbjct: 1 MSSYVANSFYKQSPNIPAYNMQTCGNYGSASEVQASRYCYGGLDLSITF--------PPP 52
Query: 57 PPRPS------------YPERQYSCTSLQGPGNSRGH---GPAQAGHHHPEKSQSLCEPA 101
P S +P+R +C++ PG++ G P G + + ++ E
Sbjct: 53 APSNSLHGVDMAANPRAHPDRP-ACSAAAAPGHAPGRDEAAPLNPGMYSQKAARPALEER 111
Query: 102 PLSGASASPSPA----PPACSQP-APDHPSSAASKQPIVYPWMKKIHVSTVNPNYNGGEP 156
S A P SQP AP P +YPWM K+H+S + +
Sbjct: 112 AKSSGEIKEEQAQTGQPAGLSQPPAP----------PQIYPWMTKLHMS------HETDG 155
Query: 157 KRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHR 216
KRSRT+YTR Q LELEKEFH+NRYLTRRRRIEIA++LCL+ERQIKIWFQNRRMKWKKD +
Sbjct: 156 KRSRTSYTRYQTLELEKEFHFNRYLTRRRRIEIANNLCLNERQIKIWFQNRRMKWKKDSK 215
Query: 217 L 217
+
Sbjct: 216 M 216
>gi|23503237 homeobox B6 [Homo sapiens]
Length = 224
Score = 132 bits (332), Expect = 3e-31
Identities = 90/231 (38%), Positives = 121/231 (52%), Gaps = 29/231 (12%)
Query: 8 MDSNYIDPKFPPCEEYSQNSYI---PEHSPEYYGRTRESGFQHHHQELYPPPPPRPSYPE 64
M S +++ FP Q S++ P +S Y R H+ Y P P + +
Sbjct: 1 MSSYFVNSTFPVTLASGQESFLGQLPLYSSGYADPLR------HYPAPYGPGPGQ----D 50
Query: 65 RQYSCTSLQGPGNSRGHGPAQAGHHHP-----EKSQSLCEPAPLSGASASP----SPAPP 115
+ ++ +S P G+G A + P + +S C LSGA P P
Sbjct: 51 KGFATSSYYPPAGG-GYGRAAPCDYGPAPAFYREKESACA---LSGADEQPPFHPEPRKS 106
Query: 116 ACSQPAPDHPSSAASK-QPIVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLELEKE 174
C+Q + K VYPWM++++ + N + G +R R YTR Q LELEKE
Sbjct: 107 DCAQDKSVFGETEEQKCSTPVYPWMQRMN--SCNSSSFGPSGRRGRQTYTRYQTLELEKE 164
Query: 175 FHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSA 225
FHYNRYLTRRRRIEIAH+LCL+ERQIKIWFQNRRMKWKK+ +L + SA
Sbjct: 165 FHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKESKLLSASQLSA 215
>gi|24497556 homeobox A7 [Homo sapiens]
Length = 230
Score = 129 bits (325), Expect = 2e-30
Identities = 67/144 (46%), Positives = 85/144 (59%), Gaps = 11/144 (7%)
Query: 113 APPACSQPAPDHPSSAASKQPIVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLELE 172
A AC + AA +YPWM+ +G + KR R YTR Q LELE
Sbjct: 97 AKGACDKTDEGALHGAAEANFRIYPWMRS----------SGPDRKRGRQTYTRYQTLELE 146
Query: 173 KEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAAP 232
KEFH+NRYLTRRRRIEIAH+LCL+ERQIKIWFQNRRMKWKK+H+ +A P GA P
Sbjct: 147 KEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHK-DEGPTAAAAPEGAVP 205
Query: 233 STLSAATPGTSEDHSQSATPPEQQ 256
S + A +++ +++
Sbjct: 206 SAAATAAADKADEEDDDEEEEDEE 229
>gi|85068580 homeobox B7 [Homo sapiens]
Length = 217
Score = 126 bits (316), Expect = 2e-29
Identities = 74/170 (43%), Positives = 90/170 (52%), Gaps = 20/170 (11%)
Query: 57 PPRPSYPERQYS--CTSLQG--PGNSRGHGPAQAGHH------HPEKSQSLCEPAPLSGA 106
P RP Y + S+QG PG G + AG + P C P + +
Sbjct: 38 PQRPGYGAGSGASFAASMQGLYPGGGGMAGQSAAGVYAAGYGLEPSSFNMHCAPFEQNLS 97
Query: 107 SASPSPAPPACSQPAPDHPSSAASKQPIVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQ 166
P + A AA +YPWM+ +G + KR R YTR
Sbjct: 98 GVCPGDSAKAAGAKEQRDSDLAAESNFRIYPWMRS----------SGTDRKRGRQTYTRY 147
Query: 167 QVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHR 216
Q LELEKEFHYNRYLTRRRRIEIAH+LCL+ERQIKIWFQNRRMKWKK+++
Sbjct: 148 QTLELEKEFHYNRYLTRRRRIEIAHTLCLTERQIKIWFQNRRMKWKKENK 197
>gi|13489077 homeobox A6 [Homo sapiens]
Length = 233
Score = 122 bits (305), Expect = 4e-28
Identities = 77/169 (45%), Positives = 95/169 (56%), Gaps = 25/169 (14%)
Query: 62 YPERQYSCTSLQGPGNSRGHGPAQAGHHHPEKSQSLCEPAPLSGASASPSPAPPACSQPA 121
Y ++ S S G G RG P H PE+ +P SG Q
Sbjct: 80 YSDKDLSGASPSGSGKQRG--PGDYLHFSPEQQY---KPDSSSG-------------QGK 121
Query: 122 PDHPSSAASKQPI-VYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLELEKEFHYNRY 180
H A K VYPWM++++ S Y G +R R YTR Q LELEKEFH+NRY
Sbjct: 122 ALHDEGADRKYTSPVYPWMQRMN-SCAGAVY-GSHGRRGRQTYTRYQTLELEKEFHFNRY 179
Query: 181 LTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAG 229
LTRRRRIEIA++LCL+ERQIKIWFQNRRMKWKK+++L + S P+G
Sbjct: 180 LTRRRRIEIANALCLTERQIKIWFQNRRMKWKKENKL----INSTQPSG 224
>gi|24497513 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 116 bits (291), Expect = 2e-26
Identities = 84/230 (36%), Positives = 114/230 (49%), Gaps = 56/230 (24%)
Query: 43 SGFQHH-HQELYPPPPPRPSYPERQYSCTSLQGPGNSRGHGPAQAGHHH--------PEK 93
+GF ++ +Q+ YP + E SLQ P ++ GH A P +
Sbjct: 22 NGFAYNANQQPYPASAALGADGEYHRPACSLQSPSSAGGHPKAHELSEACLRTLSAPPSQ 81
Query: 94 SQSLCEP---------APLSGASASPSPAPPACSQPAPDHPSSA--------------AS 130
SL EP AP + P+P PPA + AP PSSA A+
Sbjct: 82 PPSLGEPPLHPPPPQAAPPAPQPPQPAPQPPAPTPAAPPPPSSASPPQNASNNPTPANAA 141
Query: 131 KQPI---------VYPWMKKIHVSTVNP--NYNGGEP-------------KRSRTAYTRQ 166
K P+ ++PWMK+ +T + + GE KR+RTAYT
Sbjct: 142 KSPLLNSPTVAKQIFPWMKESRQNTKQKTSSSSSGESCAGDKSPPGQASSKRARTAYTSA 201
Query: 167 QVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHR 216
Q++ELEKEFH+NRYL R RR+E+A+ L L+ERQIKIWFQNRRMK+KKD +
Sbjct: 202 QLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQK 251
>gi|13562112 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 116 bits (291), Expect = 2e-26
Identities = 84/230 (36%), Positives = 114/230 (49%), Gaps = 56/230 (24%)
Query: 43 SGFQHH-HQELYPPPPPRPSYPERQYSCTSLQGPGNSRGHGPAQAGHHH--------PEK 93
+GF ++ +Q+ YP + E SLQ P ++ GH A P +
Sbjct: 22 NGFAYNANQQPYPASAALGADGEYHRPACSLQSPSSAGGHPKAHELSEACLRTLSAPPSQ 81
Query: 94 SQSLCEP---------APLSGASASPSPAPPACSQPAPDHPSSA--------------AS 130
SL EP AP + P+P PPA + AP PSSA A+
Sbjct: 82 PPSLGEPPLHPPPPQAAPPAPQPPQPAPQPPAPTPAAPPPPSSASPPQNASNNPTPANAA 141
Query: 131 KQPI---------VYPWMKKIHVSTVNP--NYNGGEP-------------KRSRTAYTRQ 166
K P+ ++PWMK+ +T + + GE KR+RTAYT
Sbjct: 142 KSPLLNSPTVAKQIFPWMKESRQNTKQKTSSSSSGESCAGDKSPPGQASSKRARTAYTSA 201
Query: 167 QVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHR 216
Q++ELEKEFH+NRYL R RR+E+A+ L L+ERQIKIWFQNRRMK+KKD +
Sbjct: 202 QLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQK 251
>gi|24497544 homeobox C6 isoform 2 [Homo sapiens]
Length = 153
Score = 115 bits (289), Expect = 3e-26
Identities = 62/123 (50%), Positives = 81/123 (65%), Gaps = 10/123 (8%)
Query: 135 VYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLC 194
+YPWM++++ S Y G + +R R Y+R Q LELEKEFH+NRYLTRRRRIEIA++LC
Sbjct: 40 IYPWMQRMN-SHSGVGY-GADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALC 97
Query: 195 LSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAAPSTLSAATPGTSEDHSQSATPPE 254
L+ERQIKIWFQNRRMKWKK+ L T S GA +L ++ + T E
Sbjct: 98 LTERQIKIWFQNRRMKWKKESNL--TSTLSGGGGGATADSLG------GKEEKREETEEE 149
Query: 255 QQR 257
+Q+
Sbjct: 150 KQK 152
>gi|4758554 homeobox C6 isoform 1 [Homo sapiens]
Length = 235
Score = 115 bits (289), Expect = 3e-26
Identities = 62/123 (50%), Positives = 81/123 (65%), Gaps = 10/123 (8%)
Query: 135 VYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLC 194
+YPWM++++ S Y G + +R R Y+R Q LELEKEFH+NRYLTRRRRIEIA++LC
Sbjct: 122 IYPWMQRMN-SHSGVGY-GADRRRGRQIYSRYQTLELEKEFHFNRYLTRRRRIEIANALC 179
Query: 195 LSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAAPSTLSAATPGTSEDHSQSATPPE 254
L+ERQIKIWFQNRRMKWKK+ L T S GA +L ++ + T E
Sbjct: 180 LTERQIKIWFQNRRMKWKKESNL--TSTLSGGGGGATADSLG------GKEEKREETEEE 231
Query: 255 QQR 257
+Q+
Sbjct: 232 KQK 234
>gi|19923391 homeobox D3 [Homo sapiens]
Length = 432
Score = 112 bits (280), Expect = 3e-25
Identities = 88/247 (35%), Positives = 112/247 (45%), Gaps = 56/247 (22%)
Query: 37 YGRTRES-GFQHHHQELYPPPPPRPS----YPERQYSCTSLQ------------------ 73
Y +T ++ G+ HQ YPPP S YP S S
Sbjct: 34 YSKTTDTYGYSTPHQP-YPPPAAASSLDTDYPGSACSIQSSAPLRAPAHKGAELNGSCMR 92
Query: 74 -GPGNSRGHGPAQAGHHHP--EKSQSLCEPAPLSGASASPSPAPPACSQPA------PDH 124
G GNS+G G G P Q +P P SP P PA P+
Sbjct: 93 PGTGNSQGGG---GGSQPPGLNSEQQPPQPPPPPPTLPPSSPTNPGGGVPAKKPKGGPNA 149
Query: 125 PSSAASKQPIVYPWMKKIHVSTVNPNY-------------NGGEPKRSRTAYTRQQVLEL 171
SS+A+ ++PWMK+ ++ N G KR RTAYT Q++EL
Sbjct: 150 SSSSATISKQIFPWMKESRQNSKQKNSCATAGESCEDKSPPGPASKRVRTAYTSAQLVEL 209
Query: 172 EKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKD-------HRLPNTKVRS 224
EKEFH+NRYL R RR+E+A+ L L+ERQIKIWFQNRRMK+KKD H +
Sbjct: 210 EKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKAKGILHSPASQSPER 269
Query: 225 APPAGAA 231
+PP G A
Sbjct: 270 SPPLGGA 276
>gi|13273317 homeobox B8 [Homo sapiens]
Length = 243
Score = 110 bits (276), Expect = 1e-24
Identities = 82/233 (35%), Positives = 114/233 (48%), Gaps = 33/233 (14%)
Query: 3 MSSYLMDSNYIDPKFPPCEEYSQNSY-------IPEHSPEYYGRTRESGFQHHHQ--ELY 53
MSSY ++S + K+ E N Y + YG + FQH Q E Y
Sbjct: 1 MSSYFVNSLF--SKYKTGESLRPNYYDCGFAQDLGGRPTVVYGPSSGGSFQHPSQIQEFY 58
Query: 54 PPPPPRPSYPERQYSCT-SLQG-PGNSRGHGPAQAGHHHPEKSQSLCEPAPLSGASASPS 111
P + P +Q C + G PGN G+ P Q + L + A A+AS
Sbjct: 59 HGPSSLSTAPYQQNPCAVACHGDPGNFYGYDPLQRQSLFGAQDPDLVQYADCKLAAASGL 118
Query: 112 PAPPACSQPAPDHPSSAASKQPIVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLEL 171
S+ +P ++PWM+ P G +R R Y+R Q LEL
Sbjct: 119 GEEAEGSEQSPSPTQ--------LFPWMR--------PQAAAGR-RRGRQTYSRYQTLEL 161
Query: 172 EKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDH---RLPNTK 221
EKEF +N YLTR+RRIE++H+L L+ERQ+KIWFQNRRMKWKK++ + P++K
Sbjct: 162 EKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKENNKDKFPSSK 214
>gi|121114296 caudal type homeobox 1 [Homo sapiens]
Length = 265
Score = 109 bits (273), Expect = 2e-24
Identities = 81/236 (34%), Positives = 109/236 (46%), Gaps = 28/236 (11%)
Query: 29 IPEHSPEYYGRTRESGFQHHHQELYPPPPPR--PSYPE-RQYSCTS-LQGPGNSRG---- 80
+ + SP Y G R + Q PP PP P YP+ YS P + G
Sbjct: 7 LDKDSPVYPGPARPASLGLGPQAYGPPAPPPAPPQYPDFSSYSHVEPAPAPPTAWGAPFP 66
Query: 81 ---------HGPAQAGHHHPEKSQSLCEPAPLSGASASPSPAPPACSQP--APDHPSSAA 129
+GP A S + P S A P P P +QP P PSS
Sbjct: 67 APKDDWAAAYGPGPAAPAASPASLAFGPPPDFSPVPAPPGPGPGLLAQPLGGPGTPSSPG 126
Query: 130 SKQPIVYPWMKKIHVSTVNPNYNGGEPK-----RSRTAYTRQQVLELEKEFHYNRYLTRR 184
+++P Y WM++ +V GG K + R YT Q LELEKEFHY+RY+T R
Sbjct: 127 AQRPTPYEWMRR----SVAAGGGGGSGKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIR 182
Query: 185 RRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAAPSTLSAATP 240
R+ E+A +L L+ERQ+KIWFQNRR K +K ++ + + P A T + A P
Sbjct: 183 RKSELAANLGLTERQVKIWFQNRRAKERKVNKKKQQQQQPPQPPMAHDITATPAGP 238
>gi|4504465 homeobox B2 [Homo sapiens]
Length = 356
Score = 109 bits (272), Expect = 3e-24
Identities = 80/212 (37%), Positives = 103/212 (48%), Gaps = 42/212 (19%)
Query: 52 LYPPPPP-RPSYPERQYSCTSLQGPGNSRGHGPAQAGHHHPEKSQSLCEPAPLSGASASP 110
L PPPPP ++P Q ++LQ P +SQ E P A P
Sbjct: 42 LIPPPPPFEQTFPSLQPGASTLQRP-----------------RSQKRAEDGP---ALPPP 81
Query: 111 SPAPPACSQPAPDHP---SSAASKQPIVY-----PWMKKIHVSTVN--------PNYNGG 154
P P + PAP+ P ++K+P P + S V P GG
Sbjct: 82 PPPPLPAAPPAPEFPWMKEKKSAKKPSQSATSPSPAASAVPASGVGSPADGLGLPEAGGG 141
Query: 155 EPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKK- 213
+R RTAYT Q+LELEKEFH+N+YL R RR+EIA L L+ERQ+K+WFQNRRMK K+
Sbjct: 142 GARRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQ 201
Query: 214 -DHRLPNTKVRSAPPA---GAAPSTLSAATPG 241
HR P + P A P+ AA+PG
Sbjct: 202 TQHREPPDGEPACPGALEDICDPAEEPAASPG 233
>gi|84570137 homeobox B3 [Homo sapiens]
Length = 431
Score = 108 bits (270), Expect = 5e-24
Identities = 83/261 (31%), Positives = 115/261 (44%), Gaps = 61/261 (23%)
Query: 54 PPPPPRPSYP----ERQYSCTSLQGPGNSRGHGPAQAGHHHPEKSQSLCEPAPLSGASAS 109
PP PP + + Q S SLQ GN+ H ++ + + EP S
Sbjct: 32 PPQPPFQAATHLEGDYQRSACSLQSLGNAAPHAKSKELNGSCMRPGLAPEPLSAPPGSPP 91
Query: 110 PSPAP------------PACSQPAPDHPSSAASKQPIVYPWMKKIHVSTVNPNYNGGEP- 156
PS AP P+ S P P + ++ ++PWMK+ ++ N + G
Sbjct: 92 PSAAPTSATSNSSNGGGPSKSGPPKCGPGTNSTLTKQIFPWMKESRQTSKLKNNSPGTAE 151
Query: 157 -------------------------------------KRSRTAYTRQQVLELEKEFHYNR 179
KR+RTAYT Q++ELEKEFH+NR
Sbjct: 152 GCGGGGGGGGGGGSGGSGGGGGGGGGGDKSPPGSAASKRARTAYTSAQLVELEKEFHFNR 211
Query: 180 YLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSA--PPAGAAPSTLSA 237
YL R RR+E+A+ L LSERQIKIWFQNRRMK+KKD + S PAG+ P + +
Sbjct: 212 YLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKKDQKAKGLASSSGGPSPAGSPPQPMQS 271
Query: 238 ATPGTSEDHS-----QSATPP 253
+ HS +S +PP
Sbjct: 272 TAGFMNALHSMTPSYESPSPP 292
>gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens]
Length = 283
Score = 106 bits (264), Expect = 2e-23
Identities = 72/179 (40%), Positives = 91/179 (50%), Gaps = 35/179 (19%)
Query: 54 PPPPPRPSYPERQYSCTSLQGPGNSRGHGPAQAG-------HHHPEKSQSLCEPAPLSGA 106
PPPPP P +P + P S P A HHH PA L+
Sbjct: 43 PPPPPHP-FPGALGALEQGSPPDISPYEVPPLADDPAVAHLHHHL--------PAQLA-- 91
Query: 107 SASPSPAPPACSQPAPDHPSSAASKQP----IVYPWMKKIHVSTVNPNYNGG-------E 155
P PPA P P+ ++P + +PWMK + GG E
Sbjct: 92 ----LPHPPA--GPFPEGAEPGVLEEPNRVQLPFPWMKSTKAHAWKGQWAGGAYAAEPEE 145
Query: 156 PKRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKD 214
KR+RTAYTR Q+LELEKEF +N+Y++R RR+E+A L L+ER IKIWFQNRRMKWKK+
Sbjct: 146 NKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 204
>gi|15029506 homeobox D8 [Homo sapiens]
Length = 290
Score = 102 bits (253), Expect = 4e-22
Identities = 74/218 (33%), Positives = 99/218 (45%), Gaps = 50/218 (22%)
Query: 35 EYYGRTRESGFQHHHQELYPPPPPRPSYPERQYSCTSLQGPGNSRGH----GPA---QAG 87
+ YG + +GF H + + P P P P C +G G H PA QA
Sbjct: 52 QLYGNSA-AGFPHAPPQAHAHPHPSP--PPSGTGCGGREGRGQEYFHPGGGSPAAAYQAA 108
Query: 88 HHHPEKSQSLCEPAPLSGASASPSPAP------------------------PACSQPA-- 121
P P P G + PA P C +
Sbjct: 109 PPPPPHPPPPPPPPPCGGIACHGEPAKFYGYDNLQRQPIFTTQQEAELVQYPDCKSSSGN 168
Query: 122 ----PDHPSSAASKQPIVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLELEKEFHY 177
PDH + ++S + +PWM+ P G +R R Y+R Q LELEKEF +
Sbjct: 169 IGEDPDHLNQSSSPSQM-FPWMR--------PQAAPGR-RRGRQTYSRFQTLELEKEFLF 218
Query: 178 NRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDH 215
N YLTR+RRIE++H+L L+ERQ+KIWFQNRRMKWKK++
Sbjct: 219 NPYLTRKRRIEVSHALALTERQVKIWFQNRRMKWKKEN 256
>gi|5031761 homeobox A1 isoform a [Homo sapiens]
Length = 335
Score = 98.6 bits (244), Expect = 5e-21
Identities = 71/209 (33%), Positives = 92/209 (44%), Gaps = 39/209 (18%)
Query: 30 PEHSPEYY-GRTRESGFQHHHQELYPPPPPRPSYPERQYSCTSLQGPGNSRGHGPAQAGH 88
P+ +P Y G QHHH QG P H
Sbjct: 124 PQCAPAVYSGNLSSPMVQHHHHH---------------------QGYAGGAVGSPQYIHH 162
Query: 89 HHPEKSQSLCEPAPLSGASASPSPAPPACSQPAPDHPSSAASKQPIVYPWMKKIHVSTVN 148
+ ++ QSL + S + AC PA + S A + + WMK N
Sbjct: 163 SYGQEHQSLALATYNNSLSPLHASHQEACRSPASETSSPAQT-----FDWMKVKR----N 213
Query: 149 PNYNG--------GEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQI 200
P G G+P RT +T +Q+ ELEKEFH+N+YLTR RR+EIA SL L+E Q+
Sbjct: 214 PPKTGKVGEYGYLGQPNAVRTNFTTKQLTELEKEFHFNKYLTRARRVEIAASLQLNETQV 273
Query: 201 KIWFQNRRMKWKKDHRLPNTKVRSAPPAG 229
KIWFQNRRMK KK + + A P G
Sbjct: 274 KIWFQNRRMKQKKREKEGLLPISPATPPG 302
>gi|24497526 homeobox B1 [Homo sapiens]
Length = 301
Score = 98.2 bits (243), Expect = 6e-21
Identities = 86/271 (31%), Positives = 116/271 (42%), Gaps = 50/271 (18%)
Query: 17 FPPCEEYSQNSYIPEHSPEYYGRTRESGFQHHHQELYPPPP-----PRPSYPERQYS--- 68
FPP + +SY E Y G FQ + PP P PS Y+
Sbjct: 31 FPPSSAQAVDSYASEG--RYGGGLSSPAFQQNSGYPAQQPPSTLGVPFPSSAPSGYAPAA 88
Query: 69 CTSLQGPGN--SRGHGPAQAGHHHPEKSQS----LCEPAPLSGASASPSPA--PPACSQ- 119
C+ GP G G+ HP + L + GA P P PP ++
Sbjct: 89 CSPSYGPSQYYPLGQSEGDGGYFHPSSYGAQLGGLSDGYGAGGAGPGPYPPQHPPYGNEQ 148
Query: 120 ------------------PAPDHPSSAASKQPIVYPWMK--KIHVSTVNPNYNG-GEPKR 158
P P P++ ++ + WMK + T + G G P
Sbjct: 149 TASFAPAYADLLSEDKETPCPSEPNTPTAR---TFDWMKVKRNPPKTAKVSEPGLGSPSG 205
Query: 159 SRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLP 218
RT +T +Q+ ELEKEFH+N+YL+R RR+EIA +L L+E Q+KIWFQNRRMK KK R
Sbjct: 206 LRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRER-E 264
Query: 219 NTKVRSAPP------AGAAPSTLSAATPGTS 243
+V APP AG A + +P S
Sbjct: 265 EGRVPPAPPGCPKEAAGDASDQSTCTSPEAS 295
>gi|10140847 homeobox A2 [Homo sapiens]
Length = 376
Score = 96.3 bits (238), Expect = 2e-20
Identities = 57/140 (40%), Positives = 74/140 (52%), Gaps = 32/140 (22%)
Query: 102 PLSGASASPSPAPPACSQPAPDHPSSAASKQPIVYPWMKK-------------------- 141
P GA P P+P + P A + QP YPWMK+
Sbjct: 65 PRHGAGGRPKPSPAG----SRGSPVPAGALQPPEYPWMKEKKAAKKTALLPAAAAAATAA 120
Query: 142 -------IHVSTVN-PNYNGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSL 193
H ++ + +GG +R RTAYT Q+LELEKEFH+N+YL R RR+EIA L
Sbjct: 121 ATGPACLSHKESLEIADGSGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALL 180
Query: 194 CLSERQIKIWFQNRRMKWKK 213
L+ERQ+K+WFQNRRMK K+
Sbjct: 181 DLTERQVKVWFQNRRMKHKR 200
>gi|169636435 caudal type homeobox 2 [Homo sapiens]
Length = 313
Score = 95.9 bits (237), Expect = 3e-20
Identities = 61/193 (31%), Positives = 89/193 (46%), Gaps = 4/193 (2%)
Query: 68 SCTSLQGPGNSRGHGPAQAGHHHPEKSQSLCEPAPLSGASASPSPAPPACSQPAPDHPSS 127
S + G + + P HHHP + P+ SG + +P PP + A S
Sbjct: 100 SPAAAMGYSSPADYHPHHHPHHHPHHPAAA--PSCASGLLQTLNPGPPGPAATAAAEQLS 157
Query: 128 AASKQPIVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRI 187
++ + WM+K ++ + R YT Q LELEKEFHY+RY+T RR+
Sbjct: 158 PGGQRRNLCEWMRKPAQQSLGSQVKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKA 217
Query: 188 EIAHSLCLSERQIKIWFQNRRMKWKK--DHRLPNTKVRSAPPAGAAPSTLSAATPGTSED 245
E+A +L LSERQ+KIWFQNRR K +K +L + + P P PG
Sbjct: 218 ELAATLGLSERQVKIWFQNRRAKERKINKKKLQQQQQQQPPQPPPPPPQPPQPQPGPLRS 277
Query: 246 HSQSATPPEQQRA 258
+ +P +A
Sbjct: 278 VPEPLSPVSSLQA 290
>gi|12056969 homeobox C8 [Homo sapiens]
Length = 242
Score = 95.9 bits (237), Expect = 3e-20
Identities = 75/236 (31%), Positives = 107/236 (45%), Gaps = 41/236 (17%)
Query: 8 MDSNYIDPKFPPCEEYSQNSYIPEHSPEYYGRTRESGFQHHHQELYPPPPPRPSYPERQY 67
M S +++P F +Y + P YY H +Y P P + +
Sbjct: 1 MSSYFVNPLF---SKYKAGESL---EPAYYDCRFPQSVGRSHALVYGPGGSAPGFQHASH 54
Query: 68 SCTSLQGPGNSRGHGPAQAGHHHPEKSQSLC-EPAPLSGASASPSPAPPACSQPA----- 121
G S G + +G+ S S + + G A P + Q A
Sbjct: 55 HVQDFFHHGTS---GISNSGYQQNPCSLSCHGDASKFYGYEALPRQSLYGAQQEASVVQY 111
Query: 122 PDHPSSAA-------------SKQPIVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQV 168
PD SSA S +++PWM+ P+ G + R Y+R Q
Sbjct: 112 PDCKSSANTNSSEGQGHLNQNSSPSLMFPWMR--------PHAPGR--RSGRQTYSRYQT 161
Query: 169 LELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDH---RLPNTK 221
LELEKEF +N YLTR+RRIE++H+L L+ERQ+KIWFQNRRMKWKK++ +LP +
Sbjct: 162 LELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKENNKDKLPGAR 217
>gi|18959212 GS homeobox 2 [Homo sapiens]
Length = 304
Score = 95.1 bits (235), Expect = 5e-20
Identities = 59/138 (42%), Positives = 79/138 (57%), Gaps = 10/138 (7%)
Query: 81 HGPAQAGHHHPEKSQSLCEPAPLSGASASPSPAPPACSQPAPDH--PSSAASKQPIVYPW 138
H P Q HHH + Q P + A+A+ + A A + P H P A+ + P
Sbjct: 129 HHPPQHHHHHHQPQQ----PGSAAAAAAAAAAAAAAAALGHPQHHAPVCTATTYNVADP- 183
Query: 139 MKKIHVSTVNPNYNGGEP--KRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLS 196
++ H T+ + P KR RTA+T Q+LELE+EF N YL+R RRIEIA L LS
Sbjct: 184 -RRFHCLTMGGSDASQVPNGKRMRTAFTSTQLLELEREFSSNMYLSRLRRIEIATYLNLS 242
Query: 197 ERQIKIWFQNRRMKWKKD 214
E+Q+KIWFQNRR+K KK+
Sbjct: 243 EKQVKIWFQNRRVKHKKE 260
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.128 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,598,617
Number of Sequences: 37866
Number of extensions: 903894
Number of successful extensions: 10720
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 687
Number of HSP's that attempted gapping in prelim test: 7407
Number of HSP's gapped (non-prelim): 3425
length of query: 264
length of database: 18,247,518
effective HSP length: 100
effective length of query: 164
effective length of database: 14,460,918
effective search space: 2371590552
effective search space used: 2371590552
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.