HOXA1 31459

Name: HOXA1	Sequence: fasta or formatted (335aa)		NCBI GI: 5031761
Description: homeobox A1 isoform a		Referenced in: HOX Genes
Other entries for this name: alt prot [137aa] homeobox A1 isoform b
Composition: Amino acid Percentage Count Longest homopolymer A alanine 7.5 25 2 C cysteine 2.1 7 1 D aspartate 2.7 9 2 E glutamate 5.1 17 2 F phenylalanine 2.7 9 1 G glycine 7.8 26 2 H histidine 7.2 24 10 I isoleucine 2.1 7 1 K lysine 4.2 14 2 L leucine 5.7 19 2 M methionine 1.5 5 1 N asparagine 4.8 16 2 P proline 7.5 25 2 Q glutamine 6.0 20 1 R arginine 4.2 14 2 S serine 13.7 46 4 T threonine 6.0 20 2 V valine 4.2 14 1 W tryptophan 0.6 2 1 Y tyrosine 4.8 16 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 homeobox A1 isoform a HOXA1 0.343 homeobox A1 isoform b HOXB1 0.270 homeobox B1 HOXD1 0.196 homeobox D1 HOXB2 0.109 homeobox B2 HOXD4 0.109 homeobox D4 HOXC4 0.109 homeobox C4 HOXC4 0.109 homeobox C4 HOXD3 0.103 homeobox D3 HOXA5 0.099 homeobox A5 HOXA4 0.099 homeobox A4 HOXA3 0.097 homeobox A3 isoform a HOXA3 0.097 homeobox A3 isoform a HOXB4 0.097 homeobox B4 MEOX2 0.097 mesenchyme homeobox 2 HOXA2 0.096 homeobox A2 HOXA6 0.093 homeobox A6 HOXA7 0.091 homeobox A7 HOXC5 0.091 homeobox C5 CDX2 0.091 caudal type homeobox 2 MNX1 0.091 homeo box HB9 HOXC8 0.091 homeobox C8 HOXB5 0.091 homeobox B5 HOXB6 0.090 homeobox B6 PDX1 0.088 pancreatic and duodenal homeobox 1 HOXA9 0.088 homeobox A9 HOXD8 0.087 homeobox D8 HOXA3 0.087 homeobox A3 isoform b HOXB7 0.087 homeobox B7 HOXB3 0.087 homeobox B3 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.