CDX1 2454

Name: CDX1	Sequence: fasta or formatted (265aa)		NCBI GI: 121114296
Description: caudal type homeobox 1		Referenced in: Homeobox and Related Proteins Stem Cells and Early Development
Composition: Amino acid Percentage Count Longest homopolymer A alanine 11.7 31 3 C cysteine 0.4 1 1 D aspartate 3.4 9 2 E glutamate 3.8 10 2 F phenylalanine 2.6 7 1 G glycine 9.8 26 5 H histidine 1.5 4 1 I isoleucine 1.5 4 1 K lysine 5.3 14 3 L leucine 6.4 17 2 M methionine 1.5 4 1 N asparagine 1.5 4 1 P proline 18.5 49 3 Q glutamine 4.9 13 5 R arginine 5.3 14 2 S serine 7.2 19 2 T threonine 4.5 12 1 V valine 4.2 11 2 W tryptophan 1.5 4 1 Y tyrosine 4.5 12 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 caudal type homeobox 1 CDX2 0.353 caudal type homeobox 2 CDX4 0.283 caudal type homeobox 4 HOXC4 0.156 homeobox C4 HOXC4 0.156 homeobox C4 HOXB4 0.151 homeobox B4 HOXD4 0.139 homeobox D4 HOXB2 0.138 homeobox B2 HOXA4 0.136 homeobox A4 PDX1 0.134 pancreatic and duodenal homeobox 1 HOXB1 0.134 homeobox B1 HOXA3 0.132 homeobox A3 isoform a HOXA3 0.132 homeobox A3 isoform a HOXD3 0.130 homeobox D3 HOXB6 0.128 homeobox B6 HOXA5 0.125 homeobox A5 HOXB5 0.125 homeobox B5 HOXC5 0.123 homeobox C5 HOXD8 0.121 homeobox D8 HOXA2 0.121 homeobox A2 HOXB3 0.119 homeobox B3 HOXA9 0.115 homeobox A9 HOXA6 0.113 homeobox A6 HOXD11 0.112 homeobox D11 HOXD1 0.110 homeobox D1 HOXB7 0.108 homeobox B7 HOXC9 0.106 homeobox C9 HOXA10 0.102 homeobox A10 isoform a HOXC6 0.102 homeobox C6 isoform 2 HOXC10 0.102 homeobox C10 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.