Guide to the Human Genome
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Name: LOC100134447 Sequence: fasta or formatted (95aa) NCBI GI: 239508936
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             1.1          1           1
 C cysteine            9.5          9           1
 D aspartate           1.1          1           1
 E glutamate           0.0          0           0
 F phenylalanine       1.1          1           1
 G glycine             2.1          2           1
 H histidine           1.1          1           1
 I isoleucine         15.8         15           1
 K lysine              2.1          2           2
 L leucine             0.0          0           0
 M methionine          4.2          4           1
 N asparagine          3.2          3           2
 P proline             1.1          1           1
 Q glutamine           2.1          2           1
 R arginine            2.1          2           1
 S serine              2.1          2           1
 T threonine           7.4          7           1
 V valine             16.8         16           1
 W tryptophan          0.0          0           0
 Y tyrosine           27.4         26           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100129825          0.559   PREDICTED: hypothetical protein 
LOC100290334          0.537   PREDICTED: hypothetical protein XP_002346856, parti...
LOC100129825          0.511   PREDICTED: hypothetical protein 
LOC100133226          0.495   PREDICTED: hypothetical protein 
LOC100134411          0.489   PREDICTED: hypothetical protein 
LOC100293574          0.473   PREDICTED: hypothetical protein, partial 
LOC100132983          0.441   PREDICTED: hypothetical protein 
LOC100129642          0.436   PREDICTED: hypothetical protein 
LOC100133807          0.431   PREDICTED: similar to serine/threonine-protein kina...
LOC100131488          0.426   PREDICTED: hypothetical protein 
LOC100133741          0.420   PREDICTED: hypothetical protein 
LOC100134139          0.415   PREDICTED: hypothetical protein 
LOC100129802          0.415   PREDICTED: hypothetical protein 
LOC100291272          0.410   PREDICTED: hypothetical protein XP_002348172 
LOC100287989          0.410   PREDICTED: hypothetical protein XP_002343908 
LOC100133975          0.410   PREDICTED: hypothetical protein, partial 
LOC100134060          0.404   PREDICTED: hypothetical protein 
LOC100134576          0.399   PREDICTED: hypothetical protein 
LOC100131203          0.399   PREDICTED: hypothetical protein 
LOC100131203          0.399   PREDICTED: similar to serine/threonine-protein kina...
LOC100131203          0.399   PREDICTED: similar to serine/threonine-protein kina...
LOC100132782          0.399   PREDICTED: hypothetical protein 
LOC100134730          0.399   PREDICTED: hypothetical protein 
LOC100134353          0.394   PREDICTED: hypothetical protein 
LOC100134279          0.394   PREDICTED: hypothetical protein, partial 
LOC100128473          0.394   PREDICTED: hypothetical protein 
LOC100292028          0.388   PREDICTED: hypothetical protein XP_002346286 
LOC100289774          0.388   PREDICTED: hypothetical protein XP_002346899, parti...
LOC100133450          0.388   PREDICTED: hypothetical protein, partial 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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