Search of human proteins with 239740743

Search of human proteins with 239740743

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239740743 PREDICTED: similar to HLA class II
histocompatibility antigen, DRB1-7 beta chain isoform 2 [Homo sapiens]
         (264 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239740743 PREDICTED: similar to HLA class II histocompatibili...   547   e-156
gi|239740693 PREDICTED: similar to HLA class II histocompatibili...   547   e-156
gi|239740745 PREDICTED: similar to HLA class II histocompatibili...   482   e-136
gi|239740695 PREDICTED: similar to HLA class II histocompatibili...   482   e-136
gi|239748785 PREDICTED: similar to HLA class II histocompatibili...   449   e-127
gi|17986005 major histocompatibility complex, class II, DR beta ...   441   e-124
gi|239740855 PREDICTED: similar to major histocompatibility comp...   436   e-123
gi|239740853 PREDICTED: similar to major histocompatibility comp...   435   e-122
gi|155030211 major histocompatibility complex, class II, DR beta...   433   e-122
gi|239748820 PREDICTED: hypothetical protein XP_002346811 [Homo ...   431   e-121
gi|18641375 major histocompatibility complex, class II, DR beta ...   424   e-119
gi|239740859 PREDICTED: similar to major histocompatibility comp...   423   e-119
gi|239740857 PREDICTED: similar to major histocompatibility comp...   423   e-119
gi|239758090 PREDICTED: major histocompatibility complex, class ...   410   e-115
gi|52630344 major histocompatibility complex, class II, DR beta ...   410   e-115
gi|239758092 PREDICTED: similar to HLA class II histocompatibili...   400   e-112
gi|169217452 PREDICTED: similar to HLA class II histocompatibili...   329   1e-90
gi|239758095 PREDICTED: similar to major histocompatibility comp...   320   1e-87
gi|239740749 PREDICTED: similar to major histocompatibility comp...   320   1e-87
gi|239748788 PREDICTED: similar to major histocompatibility comp...   317   7e-87
gi|239740863 PREDICTED: similar to major histocompatibility comp...   317   7e-87
gi|239513955 PREDICTED: similar to major histocompatibility comp...   317   7e-87
gi|150418002 major histocompatibility complex, class II, DQ beta...   315   3e-86
gi|169168591 PREDICTED: similar to major histocompatibility comp...   314   4e-86
gi|24797076 major histocompatibility complex, class II, DP beta ...   313   1e-85
gi|239740920 PREDICTED: similar to major histocompatibility comp...   309   1e-84
gi|239740918 PREDICTED: similar to major histocompatibility comp...   309   1e-84
gi|4504403 major histocompatibility complex, class II, DO beta p...   287   6e-78
gi|169168671 PREDICTED: similar to MHC class II antigen [Homo sa...   258   3e-69
gi|169168589 PREDICTED: similar to MHC class II antigen [Homo sa...   134   1e-31

>gi|239740743 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-7 beta chain isoform 2 [Homo sapiens]
          Length = 264

 Score =  547 bits (1409), Expect = e-156
 Identities = 264/264 (100%), Positives = 264/264 (100%)

Query: 1   MDCVEKKEEGTGQQRRLRKSPGMLEKREHNASRFLWQGKYKCHFFNGTERVQFLERLFYN 60
           MDCVEKKEEGTGQQRRLRKSPGMLEKREHNASRFLWQGKYKCHFFNGTERVQFLERLFYN
Sbjct: 1   MDCVEKKEEGTGQQRRLRKSPGMLEKREHNASRFLWQGKYKCHFFNGTERVQFLERLFYN 60

Query: 61  QEEFVRFDSDVGEYRAVTELGRPVAESWNSQKDILEDRRGQVDTVCRHNYGVGESFTVQR 120
           QEEFVRFDSDVGEYRAVTELGRPVAESWNSQKDILEDRRGQVDTVCRHNYGVGESFTVQR
Sbjct: 61  QEEFVRFDSDVGEYRAVTELGRPVAESWNSQKDILEDRRGQVDTVCRHNYGVGESFTVQR 120

Query: 121 RVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDW 180
           RVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDW
Sbjct: 121 RVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDW 180

Query: 181 TFQTLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSESAQSKMLSGVGGFVLGLLFL 240
           TFQTLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSESAQSKMLSGVGGFVLGLLFL
Sbjct: 181 TFQTLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSESAQSKMLSGVGGFVLGLLFL 240

Query: 241 GAGLFIYFRNQKGHSGLQPTGFLS 264
           GAGLFIYFRNQKGHSGLQPTGFLS
Sbjct: 241 GAGLFIYFRNQKGHSGLQPTGFLS 264


>gi|239740693 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-7 beta chain isoform 2 [Homo sapiens]
          Length = 264

 Score =  547 bits (1409), Expect = e-156
 Identities = 264/264 (100%), Positives = 264/264 (100%)

Query: 1   MDCVEKKEEGTGQQRRLRKSPGMLEKREHNASRFLWQGKYKCHFFNGTERVQFLERLFYN 60
           MDCVEKKEEGTGQQRRLRKSPGMLEKREHNASRFLWQGKYKCHFFNGTERVQFLERLFYN
Sbjct: 1   MDCVEKKEEGTGQQRRLRKSPGMLEKREHNASRFLWQGKYKCHFFNGTERVQFLERLFYN 60

Query: 61  QEEFVRFDSDVGEYRAVTELGRPVAESWNSQKDILEDRRGQVDTVCRHNYGVGESFTVQR 120
           QEEFVRFDSDVGEYRAVTELGRPVAESWNSQKDILEDRRGQVDTVCRHNYGVGESFTVQR
Sbjct: 61  QEEFVRFDSDVGEYRAVTELGRPVAESWNSQKDILEDRRGQVDTVCRHNYGVGESFTVQR 120

Query: 121 RVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDW 180
           RVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDW
Sbjct: 121 RVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDW 180

Query: 181 TFQTLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSESAQSKMLSGVGGFVLGLLFL 240
           TFQTLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSESAQSKMLSGVGGFVLGLLFL
Sbjct: 181 TFQTLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSESAQSKMLSGVGGFVLGLLFL 240

Query: 241 GAGLFIYFRNQKGHSGLQPTGFLS 264
           GAGLFIYFRNQKGHSGLQPTGFLS
Sbjct: 241 GAGLFIYFRNQKGHSGLQPTGFLS 264


>gi|239740745 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-7 beta chain isoform 1 [Homo sapiens]
          Length = 266

 Score =  482 bits (1241), Expect = e-136
 Identities = 232/232 (100%), Positives = 232/232 (100%)

Query: 33  RFLWQGKYKCHFFNGTERVQFLERLFYNQEEFVRFDSDVGEYRAVTELGRPVAESWNSQK 92
           RFLWQGKYKCHFFNGTERVQFLERLFYNQEEFVRFDSDVGEYRAVTELGRPVAESWNSQK
Sbjct: 35  RFLWQGKYKCHFFNGTERVQFLERLFYNQEEFVRFDSDVGEYRAVTELGRPVAESWNSQK 94

Query: 93  DILEDRRGQVDTVCRHNYGVGESFTVQRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPG 152
           DILEDRRGQVDTVCRHNYGVGESFTVQRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPG
Sbjct: 95  DILEDRRGQVDTVCRHNYGVGESFTVQRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPG 154

Query: 153 SIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLT 212
           SIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLT
Sbjct: 155 SIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLT 214

Query: 213 VEWRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQPTGFLS 264
           VEWRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQPTGFLS
Sbjct: 215 VEWRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQPTGFLS 266


>gi|239740695 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-7 beta chain isoform 1 [Homo sapiens]
          Length = 266

 Score =  482 bits (1241), Expect = e-136
 Identities = 232/232 (100%), Positives = 232/232 (100%)

Query: 33  RFLWQGKYKCHFFNGTERVQFLERLFYNQEEFVRFDSDVGEYRAVTELGRPVAESWNSQK 92
           RFLWQGKYKCHFFNGTERVQFLERLFYNQEEFVRFDSDVGEYRAVTELGRPVAESWNSQK
Sbjct: 35  RFLWQGKYKCHFFNGTERVQFLERLFYNQEEFVRFDSDVGEYRAVTELGRPVAESWNSQK 94

Query: 93  DILEDRRGQVDTVCRHNYGVGESFTVQRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPG 152
           DILEDRRGQVDTVCRHNYGVGESFTVQRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPG
Sbjct: 95  DILEDRRGQVDTVCRHNYGVGESFTVQRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPG 154

Query: 153 SIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLT 212
           SIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLT
Sbjct: 155 SIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLT 214

Query: 213 VEWRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQPTGFLS 264
           VEWRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQPTGFLS
Sbjct: 215 VEWRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQPTGFLS 266


>gi|239748785 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-9 beta chain [Homo sapiens]
          Length = 266

 Score =  449 bits (1156), Expect = e-127
 Identities = 218/232 (93%), Positives = 223/232 (96%)

Query: 33  RFLWQGKYKCHFFNGTERVQFLERLFYNQEEFVRFDSDVGEYRAVTELGRPVAESWNSQK 92
           RFL Q K++CHFFNGTERV++L R  YNQEE VRFDSDVGEYRAVTELGRPVAESWNSQK
Sbjct: 35  RFLKQDKFECHFFNGTERVRYLHRGIYNQEENVRFDSDVGEYRAVTELGRPVAESWNSQK 94

Query: 93  DILEDRRGQVDTVCRHNYGVGESFTVQRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPG 152
           D LE RR +VDTVCRHNYGVGESFTVQRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPG
Sbjct: 95  DFLERRRAEVDTVCRHNYGVGESFTVQRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPG 154

Query: 153 SIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLT 212
           SIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLT
Sbjct: 155 SIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLT 214

Query: 213 VEWRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQPTGFLS 264
           VEWRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQPTGFLS
Sbjct: 215 VEWRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQPTGFLS 266


>gi|17986005 major histocompatibility complex, class II, DR beta 3
           precursor [Homo sapiens]
          Length = 266

 Score =  441 bits (1134), Expect = e-124
 Identities = 212/232 (91%), Positives = 222/232 (95%)

Query: 33  RFLWQGKYKCHFFNGTERVQFLERLFYNQEEFVRFDSDVGEYRAVTELGRPVAESWNSQK 92
           RFL   K +CHFFNGTERV++L+R F+NQEEF+RFDSDVGEYRAVTELGRPVAESWNSQK
Sbjct: 35  RFLELRKSECHFFNGTERVRYLDRYFHNQEEFLRFDSDVGEYRAVTELGRPVAESWNSQK 94

Query: 93  DILEDRRGQVDTVCRHNYGVGESFTVQRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPG 152
           D+LE +RG+VD  CRHNYGVGESFTVQRRVHP+VTVYPAKTQPLQHHNLLVCSVSGFYPG
Sbjct: 95  DLLEQKRGRVDNYCRHNYGVGESFTVQRRVHPQVTVYPAKTQPLQHHNLLVCSVSGFYPG 154

Query: 153 SIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLT 212
           SIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSV S LT
Sbjct: 155 SIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSALT 214

Query: 213 VEWRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQPTGFLS 264
           VEWRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQPTGFLS
Sbjct: 215 VEWRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQPTGFLS 266


>gi|239740855 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 3 isoform 1 [Homo sapiens]
          Length = 267

 Score =  436 bits (1122), Expect = e-123
 Identities = 210/230 (91%), Positives = 217/230 (94%)

Query: 35  LWQGKYKCHFFNGTERVQFLERLFYNQEEFVRFDSDVGEYRAVTELGRPVAESWNSQKDI 94
           LW  K +CHFFNGTERV+FLER F+NQEE+ RFDSDVGEYRAV ELGRP AE WNSQKD+
Sbjct: 38  LWLLKSECHFFNGTERVRFLERHFHNQEEYARFDSDVGEYRAVRELGRPDAEYWNSQKDL 97

Query: 95  LEDRRGQVDTVCRHNYGVGESFTVQRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGSI 154
           LE +RGQVD  CRHNYGVGESFTVQRRVHP+VTVYPAKTQPLQHHNLLVCSVSGFYPGSI
Sbjct: 98  LEQKRGQVDNYCRHNYGVGESFTVQRRVHPQVTVYPAKTQPLQHHNLLVCSVSGFYPGSI 157

Query: 155 EVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLTVE 214
           EVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSV SPLTVE
Sbjct: 158 EVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVE 217

Query: 215 WRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQPTGFLS 264
           W ARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQPTGFLS
Sbjct: 218 WSARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQPTGFLS 267


>gi|239740853 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 3 isoform 2 [Homo sapiens]
          Length = 266

 Score =  435 bits (1119), Expect = e-122
 Identities = 211/232 (90%), Positives = 218/232 (93%)

Query: 33  RFLWQGKYKCHFFNGTERVQFLERLFYNQEEFVRFDSDVGEYRAVTELGRPVAESWNSQK 92
           RFL   K +CHFFNGTERV+FLER F+NQEE+ RFDSDVGEYRAV ELGRP AE WNSQK
Sbjct: 35  RFLELLKSECHFFNGTERVRFLERHFHNQEEYARFDSDVGEYRAVRELGRPDAEYWNSQK 94

Query: 93  DILEDRRGQVDTVCRHNYGVGESFTVQRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPG 152
           D+LE +RGQVD  CRHNYGVGESFTVQRRVHP+VTVYPAKTQPLQHHNLLVCSVSGFYPG
Sbjct: 95  DLLEQKRGQVDNYCRHNYGVGESFTVQRRVHPQVTVYPAKTQPLQHHNLLVCSVSGFYPG 154

Query: 153 SIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLT 212
           SIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSV SPLT
Sbjct: 155 SIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLT 214

Query: 213 VEWRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQPTGFLS 264
           VEW ARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQPTGFLS
Sbjct: 215 VEWSARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQPTGFLS 266


>gi|155030211 major histocompatibility complex, class II, DR beta 1
           precursor [Homo sapiens]
          Length = 266

 Score =  433 bits (1114), Expect = e-122
 Identities = 210/232 (90%), Positives = 217/232 (93%)

Query: 33  RFLWQGKYKCHFFNGTERVQFLERLFYNQEEFVRFDSDVGEYRAVTELGRPVAESWNSQK 92
           RFLWQ K +CHFFNGTERV+FL+R FYNQEE VRFDSDVGE+RAVTELGRP AE WNSQK
Sbjct: 35  RFLWQPKRECHFFNGTERVRFLDRYFYNQEESVRFDSDVGEFRAVTELGRPDAEYWNSQK 94

Query: 93  DILEDRRGQVDTVCRHNYGVGESFTVQRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPG 152
           DILE  R  VDT CRHNYGV ESFTVQRRV P+VTVYP+KTQPLQHHNLLVCSVSGFYPG
Sbjct: 95  DILEQARAAVDTYCRHNYGVVESFTVQRRVQPKVTVYPSKTQPLQHHNLLVCSVSGFYPG 154

Query: 153 SIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLT 212
           SIEVRWF NGQEEKAG+VSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSV SPLT
Sbjct: 155 SIEVRWFLNGQEEKAGMVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLT 214

Query: 213 VEWRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQPTGFLS 264
           VEWRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQPTGFLS
Sbjct: 215 VEWRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQPTGFLS 266


>gi|239748820 PREDICTED: hypothetical protein XP_002346811 [Homo
           sapiens]
          Length = 266

 Score =  431 bits (1108), Expect = e-121
 Identities = 208/232 (89%), Positives = 217/232 (93%)

Query: 33  RFLWQGKYKCHFFNGTERVQFLERLFYNQEEFVRFDSDVGEYRAVTELGRPVAESWNSQK 92
           RFL + K++CHFFNGTERV+ LER F+NQEE VRFDSDVGE+RAVTELGRP AE WNSQK
Sbjct: 35  RFLEEVKFECHFFNGTERVRLLERYFHNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQK 94

Query: 93  DILEDRRGQVDTVCRHNYGVGESFTVQRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPG 152
           D+LE RR  VDT CRHNYGVGESFTVQRRVHP+VTVYP+KTQPLQHHNLLVCSVSGFYPG
Sbjct: 95  DLLEQRRAAVDTYCRHNYGVGESFTVQRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPG 154

Query: 153 SIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLT 212
           SIEVRWFRNGQEEK GVVSTGLI NGDWTFQTLVMLETVPRSGEVYTCQVEHPSV SPLT
Sbjct: 155 SIEVRWFRNGQEEKTGVVSTGLIHNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLT 214

Query: 213 VEWRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQPTGFLS 264
           VEWRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQP GFLS
Sbjct: 215 VEWRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQPRGFLS 266


>gi|18641375 major histocompatibility complex, class II, DR beta 5
           precursor [Homo sapiens]
          Length = 266

 Score =  424 bits (1089), Expect = e-119
 Identities = 205/232 (88%), Positives = 214/232 (92%)

Query: 33  RFLWQGKYKCHFFNGTERVQFLERLFYNQEEFVRFDSDVGEYRAVTELGRPVAESWNSQK 92
           RFL Q KY+CHFFNGTERV+FL R  YNQEE +RFDSDVGEYRAVTELGRP AE WNSQK
Sbjct: 35  RFLQQDKYECHFFNGTERVRFLHRDIYNQEEDLRFDSDVGEYRAVTELGRPDAEYWNSQK 94

Query: 93  DILEDRRGQVDTVCRHNYGVGESFTVQRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPG 152
           D LEDRR  VDT CRHNYGVGESFTVQRRV P+VTVYPA+TQ LQHHNLLVCSV+GFYPG
Sbjct: 95  DFLEDRRAAVDTYCRHNYGVGESFTVQRRVEPKVTVYPARTQTLQHHNLLVCSVNGFYPG 154

Query: 153 SIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLT 212
           SIEVRWFRN QEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSV SPLT
Sbjct: 155 SIEVRWFRNSQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLT 214

Query: 213 VEWRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQPTGFLS 264
           VEWRA+SESAQSKMLSGVGGFVLGLLFLGAGLFIYF+NQKGHSGL PTG +S
Sbjct: 215 VEWRAQSESAQSKMLSGVGGFVLGLLFLGAGLFIYFKNQKGHSGLHPTGLVS 266


>gi|239740859 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 3 isoform 1 [Homo sapiens]
          Length = 267

 Score =  423 bits (1088), Expect = e-119
 Identities = 203/230 (88%), Positives = 214/230 (93%)

Query: 35  LWQGKYKCHFFNGTERVQFLERLFYNQEEFVRFDSDVGEYRAVTELGRPVAESWNSQKDI 94
           LW    +CHFFNGTERV++L+R F+NQEE VRFDSDVGE+RAVTELGRP AE WNSQKD+
Sbjct: 38  LWVPTSECHFFNGTERVRYLDRYFHNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDL 97

Query: 95  LEDRRGQVDTVCRHNYGVGESFTVQRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGSI 154
           LE +RG+VD  CRHNYGV ESFTVQRRVHP+VTVYP+KTQPLQHHNLLVCSVSGFYPGSI
Sbjct: 98  LEQKRGRVDNYCRHNYGVVESFTVQRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSI 157

Query: 155 EVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLTVE 214
           EVRWFRNGQEEK GVVSTGLI NGDWTFQTLVMLETVPRSGEVYTCQVEHPSV SPLTVE
Sbjct: 158 EVRWFRNGQEEKTGVVSTGLIHNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVE 217

Query: 215 WRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQPTGFLS 264
           WRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQP GFLS
Sbjct: 218 WRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQPRGFLS 267


>gi|239740857 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 3 isoform 2 [Homo sapiens]
          Length = 266

 Score =  423 bits (1088), Expect = e-119
 Identities = 204/232 (87%), Positives = 215/232 (92%)

Query: 33  RFLWQGKYKCHFFNGTERVQFLERLFYNQEEFVRFDSDVGEYRAVTELGRPVAESWNSQK 92
           RFL     +CHFFNGTERV++L+R F+NQEE VRFDSDVGE+RAVTELGRP AE WNSQK
Sbjct: 35  RFLEYSTSECHFFNGTERVRYLDRYFHNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQK 94

Query: 93  DILEDRRGQVDTVCRHNYGVGESFTVQRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPG 152
           D+LE +RG+VD  CRHNYGV ESFTVQRRVHP+VTVYP+KTQPLQHHNLLVCSVSGFYPG
Sbjct: 95  DLLEQKRGRVDNYCRHNYGVVESFTVQRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPG 154

Query: 153 SIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLT 212
           SIEVRWFRNGQEEK GVVSTGLI NGDWTFQTLVMLETVPRSGEVYTCQVEHPSV SPLT
Sbjct: 155 SIEVRWFRNGQEEKTGVVSTGLIHNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLT 214

Query: 213 VEWRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQPTGFLS 264
           VEWRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQP GFLS
Sbjct: 215 VEWRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQPRGFLS 266


>gi|239758090 PREDICTED: major histocompatibility complex, class II,
           DR beta 4 [Homo sapiens]
          Length = 278

 Score =  410 bits (1054), Expect = e-115
 Identities = 198/233 (84%), Positives = 213/233 (91%)

Query: 32  SRFLWQGKYKCHFFNGTERVQFLERLFYNQEEFVRFDSDVGEYRAVTELGRPVAESWNSQ 91
           +RFL Q K +CHF NGTERV  L R  YNQEE+ R++SD+GEY+AVTELGRP AE WNSQ
Sbjct: 46  ARFLEQAKCECHFLNGTERVWNLIRYIYNQEEYARYNSDLGEYQAVTELGRPDAEYWNSQ 105

Query: 92  KDILEDRRGQVDTVCRHNYGVGESFTVQRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYP 151
           KD+LE RR +VDT CR+NYGV ESFTVQRRV P+VTVYP+KTQPLQHHNLLVCSV+GFYP
Sbjct: 106 KDLLERRRAEVDTYCRYNYGVVESFTVQRRVQPKVTVYPSKTQPLQHHNLLVCSVNGFYP 165

Query: 152 GSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPL 211
           GSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPS+MSPL
Sbjct: 166 GSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSMMSPL 225

Query: 212 TVEWRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQPTGFLS 264
           TV+W ARSESAQSKMLSGVGGFVLGLLFLG GLFIYFRNQKGHSGLQPTG LS
Sbjct: 226 TVQWSARSESAQSKMLSGVGGFVLGLLFLGTGLFIYFRNQKGHSGLQPTGLLS 278


>gi|52630344 major histocompatibility complex, class II, DR beta 4
           precursor [Homo sapiens]
          Length = 266

 Score =  410 bits (1053), Expect = e-115
 Identities = 198/232 (85%), Positives = 212/232 (91%)

Query: 33  RFLWQGKYKCHFFNGTERVQFLERLFYNQEEFVRFDSDVGEYRAVTELGRPVAESWNSQK 92
           RFL Q K +CHF NGTERV  L R  YNQEE+ R++SD+GEY+AVTELGRP AE WNSQK
Sbjct: 35  RFLEQAKCECHFLNGTERVWNLIRYIYNQEEYARYNSDLGEYQAVTELGRPDAEYWNSQK 94

Query: 93  DILEDRRGQVDTVCRHNYGVGESFTVQRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPG 152
           D+LE RR +VDT CR+NYGV ESFTVQRRV P+VTVYP+KTQPLQHHNLLVCSV+GFYPG
Sbjct: 95  DLLERRRAEVDTYCRYNYGVVESFTVQRRVQPKVTVYPSKTQPLQHHNLLVCSVNGFYPG 154

Query: 153 SIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLT 212
           SIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPS+MSPLT
Sbjct: 155 SIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSMMSPLT 214

Query: 213 VEWRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQPTGFLS 264
           V+W ARSESAQSKMLSGVGGFVLGLLFLG GLFIYFRNQKGHSGLQPTG LS
Sbjct: 215 VQWSARSESAQSKMLSGVGGFVLGLLFLGTGLFIYFRNQKGHSGLQPTGLLS 266


>gi|239758092 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-7 beta chain [Homo sapiens]
          Length = 253

 Score =  400 bits (1028), Expect = e-112
 Identities = 203/234 (86%), Positives = 207/234 (88%), Gaps = 17/234 (7%)

Query: 33  RFLWQGKYKCHFFNGTERVQFLERLFYNQEEFVRFDSDVGEYRAVTELGRPVAESWNSQK 92
           RFLWQGKYKCHFFNGTERVQFLERLFYNQEEFVRFDSDVGEYRAVTELGRPVAE    Q 
Sbjct: 35  RFLWQGKYKCHFFNGTERVQFLERLFYNQEEFVRFDSDVGEYRAVTELGRPVAEQKTKQG 94

Query: 93  DILEDRRGQVDTVCRHNYGVGESFTVQ--RRVHPEVTVYPAKTQPLQHHNLLVCSVSGFY 150
           D+L          C     + +SF +     VHPEVTVYPAKTQPLQHHNLLVCSVSGFY
Sbjct: 95  DLL----------C-----LPDSFPLPCFLLVHPEVTVYPAKTQPLQHHNLLVCSVSGFY 139

Query: 151 PGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVMSP 210
           PGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVMSP
Sbjct: 140 PGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVMSP 199

Query: 211 LTVEWRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQPTGFLS 264
           LTVEWRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQPTGFLS
Sbjct: 200 LTVEWRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQPTGFLS 253


>gi|169217452 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-4 beta chain, partial [Homo sapiens]
          Length = 223

 Score =  329 bits (844), Expect = 1e-90
 Identities = 155/178 (87%), Positives = 167/178 (93%)

Query: 32  SRFLWQGKYKCHFFNGTERVQFLERLFYNQEEFVRFDSDVGEYRAVTELGRPVAESWNSQ 91
           +RFL Q K++CHFFNGTERV+FL+R FY+QEE+VRFDSDVGEYRAVTELGRP AE WNSQ
Sbjct: 46  ARFLEQVKHECHFFNGTERVRFLDRYFYHQEEYVRFDSDVGEYRAVTELGRPDAEYWNSQ 105

Query: 92  KDILEDRRGQVDTVCRHNYGVGESFTVQRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYP 151
           KD+LE +R  VDT CRHNYGVGESFTVQRRV+PEVTVYPAKTQPLQHHNLLVCSV+GFYP
Sbjct: 106 KDLLEQKRAAVDTYCRHNYGVGESFTVQRRVYPEVTVYPAKTQPLQHHNLLVCSVNGFYP 165

Query: 152 GSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVMS 209
           GSIEVRWFRNGQEEK GVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPS+ S
Sbjct: 166 GSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSLTS 223


>gi|239758095 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 5 [Homo sapiens]
          Length = 281

 Score =  320 bits (819), Expect = 1e-87
 Identities = 153/220 (69%), Positives = 179/220 (81%)

Query: 34  FLWQGKYKCHFFNGTERVQFLERLFYNQEEFVRFDSDVGEYRAVTELGRPVAESWNSQKD 93
           F++Q K  C+F NGTERV+ + R  YN+EE VRFDSDVGE+RAVT LG P AE WNSQKD
Sbjct: 39  FVYQFKGMCYFTNGTERVRLVSRSIYNREEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKD 98

Query: 94  ILEDRRGQVDTVCRHNYGVGESFTVQRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGS 153
           ILE +R  VD VCRHNY +    T+QRRV P VT+ P++T+ L HHNLLVCSV+ FYP  
Sbjct: 99  ILERKRAAVDRVCRHNYQLELRTTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQ 158

Query: 154 IEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLTV 213
           I+VRWFRNGQEE AGVVST LI+NGDWTFQ LVMLE  P+ G+VYTC VEHPS+ SP+TV
Sbjct: 159 IKVRWFRNGQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITV 218

Query: 214 EWRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKG 253
           EWRA+SESAQSKMLSG+GGFVLGL+FLG GL I+ R+QKG
Sbjct: 219 EWRAQSESAQSKMLSGIGGFVLGLIFLGLGLIIHHRSQKG 258


>gi|239740749 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 5 [Homo sapiens]
          Length = 281

 Score =  320 bits (819), Expect = 1e-87
 Identities = 153/220 (69%), Positives = 179/220 (81%)

Query: 34  FLWQGKYKCHFFNGTERVQFLERLFYNQEEFVRFDSDVGEYRAVTELGRPVAESWNSQKD 93
           F++Q K  C+F NGTERV+ + R  YN+EE VRFDSDVGE+RAVT LG P AE WNSQKD
Sbjct: 39  FVYQFKGMCYFTNGTERVRLVSRSIYNREEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKD 98

Query: 94  ILEDRRGQVDTVCRHNYGVGESFTVQRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGS 153
           ILE +R  VD VCRHNY +    T+QRRV P VT+ P++T+ L HHNLLVCSV+ FYP  
Sbjct: 99  ILERKRAAVDRVCRHNYQLELRTTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQ 158

Query: 154 IEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLTV 213
           I+VRWFRNGQEE AGVVST LI+NGDWTFQ LVMLE  P+ G+VYTC VEHPS+ SP+TV
Sbjct: 159 IKVRWFRNGQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITV 218

Query: 214 EWRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKG 253
           EWRA+SESAQSKMLSG+GGFVLGL+FLG GL I+ R+QKG
Sbjct: 219 EWRAQSESAQSKMLSGIGGFVLGLIFLGLGLIIHHRSQKG 258


>gi|239748788 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 5 isoform 2 [Homo sapiens]
          Length = 281

 Score =  317 bits (812), Expect = 7e-87
 Identities = 152/220 (69%), Positives = 178/220 (80%)

Query: 34  FLWQGKYKCHFFNGTERVQFLERLFYNQEEFVRFDSDVGEYRAVTELGRPVAESWNSQKD 93
           F++Q K  C+F NGTERV+ + R  YN+EE VRFDSDVGE+RAVT LG P AE WNSQKD
Sbjct: 39  FVYQFKGMCYFTNGTERVRLVSRSIYNREEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKD 98

Query: 94  ILEDRRGQVDTVCRHNYGVGESFTVQRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGS 153
           ILE +R  VD VCRHNY +    T+QRRV P VT+ P++T+ L HHNLLVCSV+ FYP  
Sbjct: 99  ILERKRAAVDRVCRHNYQLELRTTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQ 158

Query: 154 IEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLTV 213
           I+VRWFRN QEE AGVVST LI+NGDWTFQ LVMLE  P+ G+VYTC VEHPS+ SP+TV
Sbjct: 159 IKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITV 218

Query: 214 EWRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKG 253
           EWRA+SESAQSKMLSG+GGFVLGL+FLG GL I+ R+QKG
Sbjct: 219 EWRAQSESAQSKMLSGIGGFVLGLIFLGLGLIIHHRSQKG 258


>gi|239740863 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 5 [Homo sapiens]
          Length = 281

 Score =  317 bits (812), Expect = 7e-87
 Identities = 152/220 (69%), Positives = 178/220 (80%)

Query: 34  FLWQGKYKCHFFNGTERVQFLERLFYNQEEFVRFDSDVGEYRAVTELGRPVAESWNSQKD 93
           F++Q K  C+F NGTERV+ + R  YN+EE VRFDSDVGE+RAVT LG P AE WNSQKD
Sbjct: 39  FVYQFKGMCYFTNGTERVRLVSRSIYNREEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKD 98

Query: 94  ILEDRRGQVDTVCRHNYGVGESFTVQRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGS 153
           ILE +R  VD VCRHNY +    T+QRRV P VT+ P++T+ L HHNLLVCSV+ FYP  
Sbjct: 99  ILERKRAAVDRVCRHNYQLELRTTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQ 158

Query: 154 IEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLTV 213
           I+VRWFRN QEE AGVVST LI+NGDWTFQ LVMLE  P+ G+VYTC VEHPS+ SP+TV
Sbjct: 159 IKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITV 218

Query: 214 EWRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKG 253
           EWRA+SESAQSKMLSG+GGFVLGL+FLG GL I+ R+QKG
Sbjct: 219 EWRAQSESAQSKMLSGIGGFVLGLIFLGLGLIIHHRSQKG 258


>gi|239513955 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 5 [Homo sapiens]
          Length = 281

 Score =  317 bits (812), Expect = 7e-87
 Identities = 152/220 (69%), Positives = 178/220 (80%)

Query: 34  FLWQGKYKCHFFNGTERVQFLERLFYNQEEFVRFDSDVGEYRAVTELGRPVAESWNSQKD 93
           F++Q K  C+F NGTERV+ + R  YN+EE VRFDSDVGE+RAVT LG P AE WNSQKD
Sbjct: 39  FVYQFKGMCYFTNGTERVRLVSRSIYNREEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKD 98

Query: 94  ILEDRRGQVDTVCRHNYGVGESFTVQRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGS 153
           ILE +R  VD VCRHNY +    T+QRRV P VT+ P++T+ L HHNLLVCSV+ FYP  
Sbjct: 99  ILERKRAAVDRVCRHNYQLELRTTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQ 158

Query: 154 IEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLTV 213
           I+VRWFRN QEE AGVVST LI+NGDWTFQ LVMLE  P+ G+VYTC VEHPS+ SP+TV
Sbjct: 159 IKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITV 218

Query: 214 EWRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKG 253
           EWRA+SESAQSKMLSG+GGFVLGL+FLG GL I+ R+QKG
Sbjct: 219 EWRAQSESAQSKMLSGIGGFVLGLIFLGLGLIIHHRSQKG 258


>gi|150418002 major histocompatibility complex, class II, DQ beta 1
           precursor [Homo sapiens]
          Length = 261

 Score =  315 bits (806), Expect = 3e-86
 Identities = 152/231 (65%), Positives = 181/231 (78%)

Query: 23  MLEKREHNASRFLWQGKYKCHFFNGTERVQFLERLFYNQEEFVRFDSDVGEYRAVTELGR 82
           +L +   +   F++Q K  C+F NGTERV+ + R  YN+EE+ RFDSDVG YRAVT  GR
Sbjct: 28  LLAEGRDSPEDFVFQFKGMCYFTNGTERVRLVTRYIYNREEYARFDSDVGVYRAVTPQGR 87

Query: 83  PVAESWNSQKDILEDRRGQVDTVCRHNYGVGESFTVQRRVHPEVTVYPAKTQPLQHHNLL 142
           P AE WNSQK++LE  R ++DTVCRHNY V     +QRRV P VT+ P++T+ L HHNLL
Sbjct: 88  PDAEYWNSQKEVLEGTRAELDTVCRHNYEVAFRGILQRRVEPTVTISPSRTEALNHHNLL 147

Query: 143 VCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQV 202
           VCSV+ FYPG I+VRWFRN QEE AGVVST LI+NGDWTFQ LVMLE  P+ G+VYTC V
Sbjct: 148 VCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHV 207

Query: 203 EHPSVMSPLTVEWRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKG 253
           EHPS+ SP+TVEWRA+SESAQSKMLSGVGGFVLGL+FLG GL I  R+QKG
Sbjct: 208 EHPSLQSPITVEWRAQSESAQSKMLSGVGGFVLGLIFLGLGLIIRQRSQKG 258


>gi|169168591 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 5 isoform 1 [Homo sapiens]
          Length = 261

 Score =  314 bits (805), Expect = 4e-86
 Identities = 150/220 (68%), Positives = 177/220 (80%)

Query: 34  FLWQGKYKCHFFNGTERVQFLERLFYNQEEFVRFDSDVGEYRAVTELGRPVAESWNSQKD 93
           F++Q K  C+F NGTERV+ + R  YN+EE+ RFDSDVG YRAVT LG P AE WNSQK+
Sbjct: 39  FVFQFKGMCYFTNGTERVRGVTRYIYNREEYARFDSDVGVYRAVTPLGPPAAEYWNSQKE 98

Query: 94  ILEDRRGQVDTVCRHNYGVGESFTVQRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGS 153
           +LE  R  VDTVCRHNY +    T+QRRV P VT+ P++T+ L HHNLLVCSV+ FYP  
Sbjct: 99  VLERTRASVDTVCRHNYQLELRTTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQ 158

Query: 154 IEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLTV 213
           I+VRWFRN QEE AGVVST LI+NGDWTFQ LVMLE  P+ G+VYTC VEHPS+ SP+TV
Sbjct: 159 IKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITV 218

Query: 214 EWRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKG 253
           EWRA+SESAQSKMLSG+GGFVLGL+FLG GL I+ R+QKG
Sbjct: 219 EWRAQSESAQSKMLSGIGGFVLGLIFLGLGLIIHHRSQKG 258


>gi|24797076 major histocompatibility complex, class II, DP beta 1
           precursor [Homo sapiens]
          Length = 258

 Score =  313 bits (801), Expect = 1e-85
 Identities = 148/223 (66%), Positives = 180/223 (80%), Gaps = 2/223 (0%)

Query: 34  FLWQGKYKCHFFNGTERVQFLERLFYNQEEFVRFDSDVGEYRAVTELGRPVAESWNSQKD 93
           +L+QG+ +C+ FNGT+R  FLER  YN+EEF RFDSDVGE+RAVTELGRP AE WNSQKD
Sbjct: 36  YLFQGRQECYAFNGTQR--FLERYIYNREEFARFDSDVGEFRAVTELGRPAAEYWNSQKD 93

Query: 94  ILEDRRGQVDTVCRHNYGVGESFTVQRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGS 153
           ILE++R   D +CRHNY +G   T+QRRV P V V P+K  PLQHHNLLVC V+ FYPGS
Sbjct: 94  ILEEKRAVPDRMCRHNYELGGPMTLQRRVQPRVNVSPSKKGPLQHHNLLVCHVTDFYPGS 153

Query: 154 IEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLTV 213
           I+VRWF NGQEE AGVVST LI+NGDWTFQ LVMLE  P+ G+VYTCQVEH S+ SP+TV
Sbjct: 154 IQVRWFLNGQEETAGVVSTNLIRNGDWTFQILVMLEMTPQQGDVYTCQVEHTSLDSPVTV 213

Query: 214 EWRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSG 256
           EW+A+S+SA+SK L+G GGFVLGL+  G G+F++ R++K   G
Sbjct: 214 EWKAQSDSARSKTLTGAGGFVLGLIICGVGIFMHRRSKKVQRG 256


>gi|239740920 PREDICTED: similar to major histocompatibility
           complex, class II, DQ beta 1 isoform 2 [Homo sapiens]
          Length = 261

 Score =  309 bits (792), Expect = 1e-84
 Identities = 146/220 (66%), Positives = 176/220 (80%)

Query: 34  FLWQGKYKCHFFNGTERVQFLERLFYNQEEFVRFDSDVGEYRAVTELGRPVAESWNSQKD 93
           F++Q K  C+F NGTERV+ + R  YN+EE+ RFDSDVG YRAVT LG P AE WNSQK+
Sbjct: 39  FVYQFKGMCYFTNGTERVRGVTRYIYNREEYARFDSDVGVYRAVTPLGPPAAEYWNSQKE 98

Query: 94  ILEDRRGQVDTVCRHNYGVGESFTVQRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGS 153
           +LE  R ++DTVCRHNY +    T+QRRV P VT+ P++T+ L HHNLLVCSV+ FYP  
Sbjct: 99  VLERTRAELDTVCRHNYQLELRTTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQ 158

Query: 154 IEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLTV 213
           I+VRWFRN QEE  GVVST LI+NGDWTFQ LVMLE  P+ G+VYTC VEHPS+ +P+ V
Sbjct: 159 IKVRWFRNDQEETTGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQNPIIV 218

Query: 214 EWRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKG 253
           EWRA+SESAQSKMLSG+GGFVLGL+FLG GL I+ R+QKG
Sbjct: 219 EWRAQSESAQSKMLSGIGGFVLGLIFLGLGLIIHHRSQKG 258


>gi|239740918 PREDICTED: similar to major histocompatibility
           complex, class II, DQ beta 1 isoform 1 [Homo sapiens]
          Length = 281

 Score =  309 bits (792), Expect = 1e-84
 Identities = 146/220 (66%), Positives = 176/220 (80%)

Query: 34  FLWQGKYKCHFFNGTERVQFLERLFYNQEEFVRFDSDVGEYRAVTELGRPVAESWNSQKD 93
           F++Q K  C+F NGTERV+ + R  YN+EE+ RFDSDVG YRAVT LG P AE WNSQK+
Sbjct: 39  FVYQFKGMCYFTNGTERVRGVTRYIYNREEYARFDSDVGVYRAVTPLGPPAAEYWNSQKE 98

Query: 94  ILEDRRGQVDTVCRHNYGVGESFTVQRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGS 153
           +LE  R ++DTVCRHNY +    T+QRRV P VT+ P++T+ L HHNLLVCSV+ FYP  
Sbjct: 99  VLERTRAELDTVCRHNYQLELRTTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQ 158

Query: 154 IEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLTV 213
           I+VRWFRN QEE  GVVST LI+NGDWTFQ LVMLE  P+ G+VYTC VEHPS+ +P+ V
Sbjct: 159 IKVRWFRNDQEETTGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQNPIIV 218

Query: 214 EWRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKG 253
           EWRA+SESAQSKMLSG+GGFVLGL+FLG GL I+ R+QKG
Sbjct: 219 EWRAQSESAQSKMLSGIGGFVLGLIFLGLGLIIHHRSQKG 258


>gi|4504403 major histocompatibility complex, class II, DO beta
           precursor [Homo sapiens]
          Length = 273

 Score =  287 bits (735), Expect = 6e-78
 Identities = 137/228 (60%), Positives = 173/228 (75%)

Query: 34  FLWQGKYKCHFFNGTERVQFLERLFYNQEEFVRFDSDVGEYRAVTELGRPVAESWNSQKD 93
           F+ Q K  C+F NGTE+VQF+ R  +N EE+VRFDSDVG + A+T+LG+P AE WNS+ D
Sbjct: 33  FVIQAKADCYFTNGTEKVQFVVRFIFNLEEYVRFDSDVGMFVALTKLGQPDAEQWNSRLD 92

Query: 94  ILEDRRGQVDTVCRHNYGVGESFTVQRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGS 153
           +LE  R  VD VCRHNY +G  FTV R+V PEVTVYP +T  L  HNLL CSV+GFYPG 
Sbjct: 93  LLERSRQAVDGVCRHNYRLGAPFTVGRKVQPEVTVYPERTPLLHQHNLLHCSVTGFYPGD 152

Query: 154 IEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLTV 213
           I+++WF NGQEE+AGV+STG I+NGDWTFQT+VMLE  P  G VYTC V+H S++SP++V
Sbjct: 153 IKIKWFLNGQEERAGVMSTGPIRNGDWTFQTVVMLEMTPELGHVYTCLVDHSSLLSPVSV 212

Query: 214 EWRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQPTG 261
           EWRA+SE +  KMLSG+  F+LGL+FL  G+ I  R QKG+   Q +G
Sbjct: 213 EWRAQSEYSWRKMLSGIAAFLLGLIFLLVGIVIQLRAQKGYVRTQMSG 260


>gi|169168671 PREDICTED: similar to MHC class II antigen [Homo
           sapiens]
          Length = 241

 Score =  258 bits (660), Expect = 3e-69
 Identities = 124/140 (88%), Positives = 130/140 (92%)

Query: 122 VHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWT 181
           + P+ T+YPAKT+PL H N LVCSVSGFYPGSIEVRWF+NGQEEKA VVS GLIQNGDWT
Sbjct: 99  LQPKGTMYPAKTEPLHHRNPLVCSVSGFYPGSIEVRWFQNGQEEKAAVVSIGLIQNGDWT 158

Query: 182 FQTLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSESAQSKMLSGVGGFVLGLLFLG 241
           FQTLVMLETVPRSGEVYTCQVEHPSV SPLTVEW AR+ESAQSKMLSGVGGFVLGLLFLG
Sbjct: 159 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWSARTESAQSKMLSGVGGFVLGLLFLG 218

Query: 242 AGLFIYFRNQKGHSGLQPTG 261
            GLFIYFRNQKGHSGLQPTG
Sbjct: 219 TGLFIYFRNQKGHSGLQPTG 238


>gi|169168589 PREDICTED: similar to MHC class II antigen [Homo
           sapiens]
          Length = 140

 Score =  134 bits (336), Expect = 1e-31
 Identities = 64/89 (71%), Positives = 73/89 (82%)

Query: 33  RFLWQGKYKCHFFNGTERVQFLERLFYNQEEFVRFDSDVGEYRAVTELGRPVAESWNSQK 92
           RFL Q K +CHF NGTERV  L R  YNQEE+ R++SD+GEY+AVTELGRP AE WNSQK
Sbjct: 35  RFLEQAKCECHFLNGTERVWNLIRYIYNQEEYARYNSDLGEYQAVTELGRPDAEYWNSQK 94

Query: 93  DILEDRRGQVDTVCRHNYGVGESFTVQRR 121
           D+LE RR +VDT CR+NYGV ESFTVQRR
Sbjct: 95  DLLERRRAEVDTYCRYNYGVVESFTVQRR 123


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.136    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,776,176
Number of Sequences: 37866
Number of extensions: 469087
Number of successful extensions: 1163
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 1004
Number of HSP's gapped (non-prelim): 166
length of query: 264
length of database: 18,247,518
effective HSP length: 100
effective length of query: 164
effective length of database: 14,460,918
effective search space: 2371590552
effective search space used: 2371590552
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.