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Search of human proteins with 21361571
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|21361571 CD48 molecule [Homo sapiens]
(243 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|21361571 CD48 molecule [Homo sapiens] 501 e-142
gi|4506969 signaling lymphocytic activation molecule family memb... 58 9e-09
gi|9910342 SLAM family member 8 [Homo sapiens] 55 6e-08
gi|7706529 CD244 natural killer cell receptor 2B4 [Homo sapiens] 53 2e-07
gi|86439957 HEPACAM family member 2 isoform 1 [Homo sapiens] 47 2e-05
gi|40255013 carcinoembryonic antigen-related cell adhesion molec... 46 3e-05
gi|37700249 HEPACAM family member 2 isoform 2 [Homo sapiens] 45 4e-05
gi|68161541 carcinoembryonic antigen-related cell adhesion molec... 45 6e-05
gi|19923195 carcinoembryonic antigen-related cell adhesion molec... 45 6e-05
gi|4502677 CD58 molecule isoform 1 [Homo sapiens] 44 1e-04
gi|221316575 CD58 molecule isoform 2 [Homo sapiens] 44 1e-04
gi|55925578 lymphocyte antigen 9 isoform a [Homo sapiens] 44 2e-04
gi|98986445 carcinoembryonic antigen-related cell adhesion molec... 43 2e-04
gi|8393638 F11 receptor precursor [Homo sapiens] 41 8e-04
gi|21314600 carcinoembryonic antigen-related cell adhesion molec... 41 8e-04
gi|94420689 neural cell adhesion molecule 1 isoform 1 [Homo sapi... 40 0.002
gi|115529478 neural cell adhesion molecule 1 isoform 3 [Homo sap... 40 0.002
gi|194328712 pregnancy specific beta-1-glycoprotein 8 isoform c ... 40 0.002
gi|194328710 pregnancy specific beta-1-glycoprotein 8 isoform b ... 40 0.002
gi|51510887 pregnancy specific beta-1-glycoprotein 8 isoform a [... 40 0.002
gi|109240546 pregnancy specific beta-1-glycoprotein 3 [Homo sapi... 40 0.002
gi|21361392 pregnancy specific beta-1-glycoprotein 1 [Homo sapiens] 39 0.004
gi|4502687 CD84 molecule [Homo sapiens] 39 0.004
gi|52317156 carcinoembryonic antigen-related cell adhesion molec... 39 0.005
gi|148612793 carcinoembryonic antigen-related cell adhesion mole... 39 0.005
gi|115529482 neural cell adhesion molecule 1 isoform 2 [Homo sap... 38 0.007
gi|156616284 pregnancy specific beta-1-glycoprotein 9 [Homo sapi... 38 0.009
gi|145309328 papilin [Homo sapiens] 38 0.009
gi|5901930 carcinoembryonic antigen-related cell adhesion molecu... 38 0.009
gi|226342990 SLAM family member 9 isoform 1 [Homo sapiens] 37 0.012
>gi|21361571 CD48 molecule [Homo sapiens]
Length = 243
Score = 501 bits (1289), Expect = e-142
Identities = 243/243 (100%), Positives = 243/243 (100%)
Query: 1 MCSRGWDSCLALELLLLPLSLLVTSIQGHLVHMTVVSGSNVTLNISESLPENYKQLTWFY 60
MCSRGWDSCLALELLLLPLSLLVTSIQGHLVHMTVVSGSNVTLNISESLPENYKQLTWFY
Sbjct: 1 MCSRGWDSCLALELLLLPLSLLVTSIQGHLVHMTVVSGSNVTLNISESLPENYKQLTWFY 60
Query: 61 TFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGALYISKVQKEDNSTYIMRVLKKTGNEQE 120
TFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGALYISKVQKEDNSTYIMRVLKKTGNEQE
Sbjct: 61 TFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGALYISKVQKEDNSTYIMRVLKKTGNEQE 120
Query: 121 WKIKLQVLDPVPKPVIKIEKIEDMDDNCYLKLSCVIPGESVNYTWYGDKRPFPKELQNSV 180
WKIKLQVLDPVPKPVIKIEKIEDMDDNCYLKLSCVIPGESVNYTWYGDKRPFPKELQNSV
Sbjct: 121 WKIKLQVLDPVPKPVIKIEKIEDMDDNCYLKLSCVIPGESVNYTWYGDKRPFPKELQNSV 180
Query: 181 LETTLMPHNYSRCYTCQVSNSVSSKNGTVCLSPPCTLARSFGVEWIASWLVVTVPTILGL 240
LETTLMPHNYSRCYTCQVSNSVSSKNGTVCLSPPCTLARSFGVEWIASWLVVTVPTILGL
Sbjct: 181 LETTLMPHNYSRCYTCQVSNSVSSKNGTVCLSPPCTLARSFGVEWIASWLVVTVPTILGL 240
Query: 241 LLT 243
LLT
Sbjct: 241 LLT 243
>gi|4506969 signaling lymphocytic activation molecule family member
1 [Homo sapiens]
Length = 335
Score = 57.8 bits (138), Expect = 9e-09
Identities = 47/169 (27%), Positives = 77/169 (45%), Gaps = 11/169 (6%)
Query: 63 DQKIVEWDSRKS---KYFESKFKGRVRLDPQSGALYISKVQKEDNSTYIMRVLKKTGNEQ 119
+ KIV D ++ +Y ++K + ++ L I + +KED Y+M L+K + Q
Sbjct: 75 ENKIVSLDPSEAGPPRYLGDRYKFYL----ENLTLGIRESRKEDEGWYLM-TLEKNVSVQ 129
Query: 120 EWKIKLQVLDPVPKPVIKIEKIEDMDDNCYLKLSCVIP-GESVNYTWYGDKRPFPKELQN 178
+ ++L++ + V P IK+ + C L L C + G+ V Y+W P N
Sbjct: 130 RFCLQLRLYEQVSTPEIKVLNKTQENGTCTLILGCTVEKGDHVAYSWSEKAGTHPLNPAN 189
Query: 179 S--VLETTLMPHNYSRCYTCQVSNSVSSKNGTVCLSPPCTLARSFGVEW 225
S +L TL P + Y C VSN +S+ + T P C S W
Sbjct: 190 SSHLLSLTLGPQHADNIYICTVSNPISNNSQTFSPWPGCRTDPSETKPW 238
>gi|9910342 SLAM family member 8 [Homo sapiens]
Length = 285
Score = 55.1 bits (131), Expect = 6e-08
Identities = 47/177 (26%), Positives = 77/177 (43%), Gaps = 12/177 (6%)
Query: 77 FESKFKGRVRLDPQSGALYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQVLDPVPKPVI 136
+ S+F GR +L +L + ++ D+ + + ++ G ++L+V D VP+PV+
Sbjct: 72 YHSRFLGRAQLHSNL-SLELGPLESGDSGNFSVLMVDTRGQPWTQTLQLKVYDAVPRPVV 130
Query: 137 KI----EKIEDMDDNCYLKLSCVIPGES-VNYTWYGDK------RPFPKELQNSVLETTL 185
++ E+ C + LSC P S + Y+W + P VL +L
Sbjct: 131 QVFIAVERDAQPSKTCQVFLSCWAPNISEITYSWRRETTMDFGMEPHSLFTDGQVLSISL 190
Query: 186 MPHNYSRCYTCQVSNSVSSKNGTVCLSPPCTLARSFGVEWIASWLVVTVPTILGLLL 242
P + Y+C VSN VS TV C + G L+V VP L L+L
Sbjct: 191 GPGDRDVAYSCIVSNPVSWDLATVTPWDSCHHEAAPGKASYKDVLLVVVPVSLLLML 247
>gi|7706529 CD244 natural killer cell receptor 2B4 [Homo sapiens]
Length = 365
Score = 53.1 bits (126), Expect = 2e-07
Identities = 56/215 (26%), Positives = 95/215 (44%), Gaps = 16/215 (7%)
Query: 10 LALELLLLPLSLLVTSIQGHLVHMTVVSGSNVTLNISESLPENYKQLTWFYTFDQK---- 65
+ L LLLL QG H+ +SG + L S+ + W +
Sbjct: 6 VTLILLLLLKVYQGKGCQGSADHVVSISGVPLQLQ-PNSIQTKVDSIAWKKLLPSQNGFH 64
Query: 66 -IVEWD--SRKSKYFESKFKGRVRLDPQSGALYISKVQKEDNSTYIMRVLKKTGNEQEWK 122
I++W+ S S +F V+ + +L I Q++D+ Y + V +G Q
Sbjct: 65 HILKWENGSLPSNTSNDRFSFIVK----NLSLLIKAAQQQDSGLYCLEVTSISGKVQTAT 120
Query: 123 IKLQVLDPVPKPVIKIE-KIEDMDDNCYLKLSCVIPGE-SVNYTWYGDKRPFPKELQNSV 180
++ V D V KP ++ + KI D C + LSC++ + +V+Y WY + +
Sbjct: 121 FQVFVFDKVEKPRLQGQGKILDRG-RCQVALSCLVSRDGNVSYAWYRGSKLIQTAGNLTY 179
Query: 181 LETTLMPHNYSRCYTCQVSNSVSSKNGTVCLSPPC 215
L+ + N + YTC VSN VS ++ T+ L+ C
Sbjct: 180 LDEEV-DINGTHTYTCNVSNPVSWESHTLNLTQDC 213
>gi|86439957 HEPACAM family member 2 isoform 1 [Homo sapiens]
Length = 462
Score = 47.0 bits (110), Expect = 2e-05
Identities = 49/221 (22%), Positives = 91/221 (41%), Gaps = 23/221 (10%)
Query: 9 CLALELLLLPLSLLVTSIQGHLVHMTVVSGSNVTLNISESLPENYKQLTWFYTFDQKIVE 68
C LL S L ++ H VH + ++ P + Q+ W + + +
Sbjct: 19 CKIYLLLFGACSGLKVTVPSHTVHGVRGQALYLPVHYGFHTPASDIQIIWLFERPHTMPK 78
Query: 69 W---DSRKSKYFESKFKGRVRLDPQSGALYISKVQKEDNSTYIMRV-LKKTGN-EQEWKI 123
+ KS + +++ + + P + +L I+ +Q D YI++V ++ G KI
Sbjct: 79 YLLGSVNKSVVPDLEYQHKFTMMPPNASLLINPLQFPDEGNYIVKVNIQGNGTLSASQKI 138
Query: 124 KLQVLDPVPKPVIKI-------EKIEDMDDNCYLKLSCVIPGESVNYTWYGDKRP----- 171
++ V DPV KPV++I E + +M C+++ G + Y W + RP
Sbjct: 139 QVTVDDPVTKPVVQIHPPSGAVEYVGNMTLTCHVE-----GGTRLAYQWLKNGRPVHTSS 193
Query: 172 -FPKELQNSVLETTLMPHNYSRCYTCQVSNSVSSKNGTVCL 211
+ QN+ L + Y+C V N VS + +
Sbjct: 194 TYSFSPQNNTLHIAPVTKEDIGNYSCLVRNPVSEMESDIIM 234
>gi|40255013 carcinoembryonic antigen-related cell adhesion molecule
6 (non-specific cross reacting antigen) [Homo sapiens]
Length = 344
Score = 45.8 bits (107), Expect = 3e-05
Identities = 36/148 (24%), Positives = 60/148 (40%), Gaps = 12/148 (8%)
Query: 81 FKGRVRLDPQSGALYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQVLDPVPKPVIKIEK 140
+ GR + P + +L I V + D Y ++V+K +E + V +PKP I
Sbjct: 95 YSGRETIYPNA-SLLIQNVTQNDTGFYTLQVIKSDLVNEEATGQFHVYPELPKPSISSNN 153
Query: 141 IEDMDDNCYLKLSCVIPGESVNYTWY--GDKRPFPKELQ----NSVLETTLMPHNYSRCY 194
++D + +C ++ Y W+ G P LQ N L + N + Y
Sbjct: 154 SNPVEDKDAVAFTCEPEVQNTTYLWWVNGQSLPVSPRLQLSNGNMTLTLLSVKRNDAGSY 213
Query: 195 TCQVSNSVSSKNGTVCLSPPCTLARSFG 222
C++ N S+ S P TL +G
Sbjct: 214 ECEIQNPASANR-----SDPVTLNVLYG 236
>gi|37700249 HEPACAM family member 2 isoform 2 [Homo sapiens]
Length = 450
Score = 45.4 bits (106), Expect = 4e-05
Identities = 45/208 (21%), Positives = 87/208 (41%), Gaps = 23/208 (11%)
Query: 22 LVTSIQGHLVHMTVVSGSNVTLNISESLPENYKQLTWFYTFDQKIVEW---DSRKSKYFE 78
L ++ H VH + ++ P + Q+ W + + ++ KS +
Sbjct: 20 LKVTVPSHTVHGVRGQALYLPVHYGFHTPASDIQIIWLFERPHTMPKYLLGSVNKSVVPD 79
Query: 79 SKFKGRVRLDPQSGALYISKVQKEDNSTYIMRV-LKKTGN-EQEWKIKLQVLDPVPKPVI 136
+++ + + P + +L I+ +Q D YI++V ++ G KI++ V DPV KPV+
Sbjct: 80 LEYQHKFTMMPPNASLLINPLQFPDEGNYIVKVNIQGNGTLSASQKIQVTVDDPVTKPVV 139
Query: 137 KI-------EKIEDMDDNCYLKLSCVIPGESVNYTWYGDKRP------FPKELQNSVLET 183
+I E + +M C+++ G + Y W + RP + QN+ L
Sbjct: 140 QIHPPSGAVEYVGNMTLTCHVE-----GGTRLAYQWLKNGRPVHTSSTYSFSPQNNTLHI 194
Query: 184 TLMPHNYSRCYTCQVSNSVSSKNGTVCL 211
+ Y+C V N VS + +
Sbjct: 195 APVTKEDIGNYSCLVRNPVSEMESDIIM 222
>gi|68161541 carcinoembryonic antigen-related cell adhesion molecule
1 isoform 2 precursor [Homo sapiens]
Length = 464
Score = 45.1 bits (105), Expect = 6e-05
Identities = 36/146 (24%), Positives = 62/146 (42%), Gaps = 12/146 (8%)
Query: 83 GRVRLDPQSGALYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQVLDPVPKPVIKIEKIE 142
GR + P + +L I V + D Y ++V+K +E + V +PKP I
Sbjct: 97 GRETIYPNA-SLLIQNVTQNDTGFYTLQVIKSDLVNEEATGQFHVYPELPKPSISSNNSN 155
Query: 143 DMDDNCYLKLSCVIPGESVNYTWYGDKRPFP----KELQNSVLETTLM--PHNYSRCYTC 196
++D + +C + Y W+ + + P +L N TL+ N + Y C
Sbjct: 156 PVEDKDAVAFTCEPETQDTTYLWWINNQSLPVSPRLQLSNGNRTLTLLSVTRNDTGPYEC 215
Query: 197 QVSNSVSSKNGTVCLSPPCTLARSFG 222
++ N VS+ S P TL ++G
Sbjct: 216 EIQNPVSANR-----SDPVTLNVTYG 236
Score = 27.7 bits (60), Expect = 9.4
Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 6/79 (7%)
Query: 131 VPKPVIKIEKIEDMDDNCYLKLSCVIPGESVNYTWYGDKRPFPKELQ------NSVLETT 184
V KP IK K D + L+C ++ W+ + P + N+ L
Sbjct: 325 VAKPQIKASKTTVTGDKDSVNLTCSTNDTGISIRWFFKNQSLPSSERMKLSQGNTTLSIN 384
Query: 185 LMPHNYSRCYTCQVSNSVS 203
+ + Y C+V N +S
Sbjct: 385 PVKREDAGTYWCEVFNPIS 403
>gi|19923195 carcinoembryonic antigen-related cell adhesion molecule
1 isoform 1 precursor [Homo sapiens]
Length = 526
Score = 45.1 bits (105), Expect = 6e-05
Identities = 36/146 (24%), Positives = 62/146 (42%), Gaps = 12/146 (8%)
Query: 83 GRVRLDPQSGALYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQVLDPVPKPVIKIEKIE 142
GR + P + +L I V + D Y ++V+K +E + V +PKP I
Sbjct: 97 GRETIYPNA-SLLIQNVTQNDTGFYTLQVIKSDLVNEEATGQFHVYPELPKPSISSNNSN 155
Query: 143 DMDDNCYLKLSCVIPGESVNYTWYGDKRPFP----KELQNSVLETTLM--PHNYSRCYTC 196
++D + +C + Y W+ + + P +L N TL+ N + Y C
Sbjct: 156 PVEDKDAVAFTCEPETQDTTYLWWINNQSLPVSPRLQLSNGNRTLTLLSVTRNDTGPYEC 215
Query: 197 QVSNSVSSKNGTVCLSPPCTLARSFG 222
++ N VS+ S P TL ++G
Sbjct: 216 EIQNPVSANR-----SDPVTLNVTYG 236
Score = 27.7 bits (60), Expect = 9.4
Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 6/79 (7%)
Query: 131 VPKPVIKIEKIEDMDDNCYLKLSCVIPGESVNYTWYGDKRPFPKELQ------NSVLETT 184
V KP IK K D + L+C ++ W+ + P + N+ L
Sbjct: 325 VAKPQIKASKTTVTGDKDSVNLTCSTNDTGISIRWFFKNQSLPSSERMKLSQGNTTLSIN 384
Query: 185 LMPHNYSRCYTCQVSNSVS 203
+ + Y C+V N +S
Sbjct: 385 PVKREDAGTYWCEVFNPIS 403
>gi|4502677 CD58 molecule isoform 1 [Homo sapiens]
Length = 250
Score = 44.3 bits (103), Expect = 1e-04
Identities = 45/179 (25%), Positives = 78/179 (43%), Gaps = 21/179 (11%)
Query: 40 NVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGALYISKV 99
NVT ++ ++P K++ W D K+ E ++ + + F S FK RV LD SG+L I +
Sbjct: 40 NVTFHVPSNVP--LKEVLWKKQKD-KVAELENSEFRAFSS-FKNRVYLDTVSGSLTIYNL 95
Query: 100 QKEDNSTYIMRVLKKTGNEQEWKIKLQVLDPVPKPVIKIEKIEDMDDNCYLKLSCVIPGE 159
D Y M T K L VL+ +P P + N +++ C+IP
Sbjct: 96 TSSDEDEYEMESPNIT---DTMKFFLYVLESLPSPTLTCAL-----TNGSIEVQCMIPEH 147
Query: 160 ------SVNYTWYGDKRPFPKELQNSVLETTLMPHNYSRCYTCQVSNSVSSKNGTVCLS 212
+ Y+W P + +NS M ++ + C +SN + + ++ L+
Sbjct: 148 YNSHRGLIMYSW---DCPMEQCKRNSTSIYFKMENDLPQKIQCTLSNPLFNTTSSIILT 203
>gi|221316575 CD58 molecule isoform 2 [Homo sapiens]
Length = 248
Score = 44.3 bits (103), Expect = 1e-04
Identities = 45/179 (25%), Positives = 78/179 (43%), Gaps = 21/179 (11%)
Query: 40 NVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGALYISKV 99
NVT ++ ++P K++ W D K+ E ++ + + F S FK RV LD SG+L I +
Sbjct: 40 NVTFHVPSNVP--LKEVLWKKQKD-KVAELENSEFRAFSS-FKNRVYLDTVSGSLTIYNL 95
Query: 100 QKEDNSTYIMRVLKKTGNEQEWKIKLQVLDPVPKPVIKIEKIEDMDDNCYLKLSCVIPGE 159
D Y M T K L VL+ +P P + N +++ C+IP
Sbjct: 96 TSSDEDEYEMESPNIT---DTMKFFLYVLESLPSPTLTCAL-----TNGSIEVQCMIPEH 147
Query: 160 ------SVNYTWYGDKRPFPKELQNSVLETTLMPHNYSRCYTCQVSNSVSSKNGTVCLS 212
+ Y+W P + +NS M ++ + C +SN + + ++ L+
Sbjct: 148 YNSHRGLIMYSW---DCPMEQCKRNSTSIYFKMENDLPQKIQCTLSNPLFNTTSSIILT 203
>gi|55925578 lymphocyte antigen 9 isoform a [Homo sapiens]
Length = 655
Score = 43.5 bits (101), Expect = 2e-04
Identities = 43/218 (19%), Positives = 89/218 (40%), Gaps = 10/218 (4%)
Query: 6 WDSCLALELLLLPLSLLVTSIQGHLVHMTVVSGSNVTLNISESLPENYKQLTWFYTFDQK 65
+ S L LL L + L + ++ + G +VTL ++ S+ + + W +
Sbjct: 28 FSSVLQTSLLFLLMGLRASGKDSAPTVVSGILGGSVTLPLNISVDTEIENVIWIGPKNAL 87
Query: 66 IVEWDSRKSKYFESKFKGRVRLDPQSGALYISKVQKEDNSTYIMRVLKKTGN-EQEWKIK 124
+ GR+ + S +L IS + D +Y ++ ++ E +
Sbjct: 88 AFARPKENVTIMVKSYLGRLDITKWSYSLCISNLTLNDAGSYKAQINQRNFEVTTEEEFT 147
Query: 125 LQVLDPVPKPVIKIEKIEDMDD-NCYLKLSCVIPG--ESVNYTWYGDKRPFPKELQNSVL 181
L V + + +P + ++ ++ ++ +C + L C + G +SV Y+W + + S+L
Sbjct: 148 LFVYEQLQEPQVTMKSVKVSENFSCNITLMCSVKGAEKSVLYSWTPREPHASESNGGSIL 207
Query: 182 ETTLMPHNYSRCYTCQVSNSVSSKN------GTVCLSP 213
+ P + Y C N VS ++ G C P
Sbjct: 208 TVSRTPCDPDLPYICTAQNPVSQRSSLPVHVGQFCTDP 245
>gi|98986445 carcinoembryonic antigen-related cell adhesion molecule
5 preproprotein [Homo sapiens]
Length = 702
Score = 43.1 bits (100), Expect = 2e-04
Identities = 32/131 (24%), Positives = 57/131 (43%), Gaps = 7/131 (5%)
Query: 81 FKGRVRLDPQSGALYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQVLDPVPKPVIKIEK 140
+ GR + P + +L I + + D Y + V+K +E + +V +PKP I
Sbjct: 95 YSGREIIYPNA-SLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNN 153
Query: 141 IEDMDDNCYLKLSCVIPGESVNYTWYGDKRPFP--KELQNSVLETTLMPHNYSR----CY 194
+ ++D + +C + Y W+ + + P LQ S TL N +R Y
Sbjct: 154 SKPVEDKDAVAFTCEPETQDATYLWWVNNQSLPVSPRLQLSNGNRTLTLFNVTRNDTASY 213
Query: 195 TCQVSNSVSSK 205
C+ N VS++
Sbjct: 214 KCETQNPVSAR 224
Score = 43.1 bits (100), Expect = 2e-04
Identities = 32/136 (23%), Positives = 58/136 (42%), Gaps = 12/136 (8%)
Query: 94 LYISKVQKEDNSTYIMRVLKKTGNEQEWKIK-LQVLDPVPKPVIKIEKIEDMDDNCYLKL 152
L+IS + ++++ Y + +K + V +PKP I + ++D +
Sbjct: 462 LFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAF 521
Query: 153 SCVIPGESVNYTWYGDKRPFP----KELQNSVLETTL--MPHNYSRCYTCQVSNSVSSKN 206
+C ++ Y W+ + + P +L N TL + N +R Y C + NSVS+
Sbjct: 522 TCEPEAQNTTYLWWVNGQSLPVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANR 581
Query: 207 GTVCLSPPCTLARSFG 222
S P TL +G
Sbjct: 582 -----SDPVTLDVLYG 592
Score = 29.3 bits (64), Expect = 3.2
Identities = 25/117 (21%), Positives = 46/117 (39%), Gaps = 7/117 (5%)
Query: 94 LYISKVQKEDNSTYIMRVLKK-TGNEQEWKIKLQVLDPVPKPVIKIEKIEDMDDNCYLKL 152
L+I + ++ +Y + TG + + V PKP I ++D + L
Sbjct: 284 LFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVAL 343
Query: 153 SCVIPGESVNYTWYGDKRPFP----KELQNSVLETTLM--PHNYSRCYTCQVSNSVS 203
+C ++ Y W+ + + P +L N TL+ N Y C + N +S
Sbjct: 344 TCEPEIQNTTYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNKLS 400
Score = 29.3 bits (64), Expect = 3.2
Identities = 29/130 (22%), Positives = 49/130 (37%), Gaps = 5/130 (3%)
Query: 84 RVRLDPQSGALYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQVLDPVPKPVIKIEKIED 143
R++L + L + V + D Y+ + + + L VL P+I
Sbjct: 546 RLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSY 605
Query: 144 MDDNCYLKLSC-VIPGESVNYTWYGDKRPFPKELQNSVLETTLMPHNYSRCYTCQVSNSV 202
+ L LSC S Y+W + P + VL + N + Y C VSN
Sbjct: 606 LS-GANLNLSCHSASNPSPQYSWRINGIP---QQHTQVLFIAKITPNNNGTYACFVSNLA 661
Query: 203 SSKNGTVCLS 212
+ +N ++ S
Sbjct: 662 TGRNNSIVKS 671
>gi|8393638 F11 receptor precursor [Homo sapiens]
Length = 299
Score = 41.2 bits (95), Expect = 8e-04
Identities = 42/144 (29%), Positives = 64/144 (44%), Gaps = 17/144 (11%)
Query: 40 NVTLNISES---LPENYK-QLTWFYT-FDQKIVEW-----DSRKSKYFESK----FKGRV 85
+VT++ SE +PEN +L+ Y+ F VEW D+ + + +K ++ RV
Sbjct: 28 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRV 87
Query: 86 RLDPQSGALYISKVQKEDNSTYIMRVLKKTGNEQ-EWKIKLQVLDPVPKPVIKIEKIEDM 144
P + V +ED TY V ++ GN E K+KL VL P KP + I +
Sbjct: 88 TFLPTG--ITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATI 145
Query: 145 DDNCYLKLSCVIPGESVNYTWYGD 168
+ L S YTW+ D
Sbjct: 146 GNRAVLTCSEQDGSPPSEYTWFKD 169
>gi|21314600 carcinoembryonic antigen-related cell adhesion molecule
8 [Homo sapiens]
Length = 349
Score = 41.2 bits (95), Expect = 8e-04
Identities = 32/138 (23%), Positives = 54/138 (39%), Gaps = 11/138 (7%)
Query: 91 SGALYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQVLDPVPKPVIKIEKIEDMDDNCYL 150
+ +L + V + D +Y ++V+K +E + V PKP I ++D +
Sbjct: 104 NASLLMRNVTRNDTGSYTLQVIKLNLMSEEVTGQFSVHPETPKPSISSNNSNPVEDKDAV 163
Query: 151 KLSCVIPGESVNYTWY--GDKRPFPKELQ----NSVLETTLMPHNYSRCYTCQVSNSVSS 204
+C ++ Y W+ G P LQ N L + N Y C++ N S+
Sbjct: 164 AFTCEPETQNTTYLWWVNGQSLPVSPRLQLSNGNRTLTLLSVTRNDVGPYECEIQNPASA 223
Query: 205 KNGTVCLSPPCTLARSFG 222
S P TL +G
Sbjct: 224 N-----FSDPVTLNVLYG 236
>gi|94420689 neural cell adhesion molecule 1 isoform 1 [Homo
sapiens]
Length = 848
Score = 40.0 bits (92), Expect = 0.002
Identities = 53/200 (26%), Positives = 80/200 (40%), Gaps = 26/200 (13%)
Query: 40 NVTLNISESLP-----ENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGAL 94
N T N+ +S+ E + + T +T D + +E + KY S S L
Sbjct: 222 NATANLGQSVTLVCDAEGFPEPTMSWTKDGEQIEQEEDDEKYIFSD---------DSSQL 272
Query: 95 YISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQVLDPVPKPVIK-IEKIEDMDDNCYLKLS 153
I KV K D + YI K G EQ+ I L+V KP I +E M+ + L+
Sbjct: 273 TIKKVDKNDEAEYICIAENKAG-EQDATIHLKVF---AKPKITYVENQTAMELEEQVTLT 328
Query: 154 CVIPGESV-NYTWYGDKRPFPKELQNSVLETTLMPHNYSRCYTCQVSNSVSSKNGTVCLS 212
C G+ + + TW R E E TL H R + S ++ S T
Sbjct: 329 CEASGDPIPSITWRTSTRNISSE------EKTLDGHMVVRSHARVSSLTLKSIQYTDAGE 382
Query: 213 PPCTLARSFGVEWIASWLVV 232
CT + + G + + +L V
Sbjct: 383 YICTASNTIGQDSQSMYLEV 402
>gi|115529478 neural cell adhesion molecule 1 isoform 3 [Homo
sapiens]
Length = 761
Score = 40.0 bits (92), Expect = 0.002
Identities = 53/200 (26%), Positives = 80/200 (40%), Gaps = 26/200 (13%)
Query: 40 NVTLNISESLP-----ENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGAL 94
N T N+ +S+ E + + T +T D + +E + KY S S L
Sbjct: 222 NATANLGQSVTLVCDAEGFPEPTMSWTKDGEQIEQEEDDEKYIFSD---------DSSQL 272
Query: 95 YISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQVLDPVPKPVIK-IEKIEDMDDNCYLKLS 153
I KV K D + YI K G EQ+ I L+V KP I +E M+ + L+
Sbjct: 273 TIKKVDKNDEAEYICIAENKAG-EQDATIHLKVF---AKPKITYVENQTAMELEEQVTLT 328
Query: 154 CVIPGESV-NYTWYGDKRPFPKELQNSVLETTLMPHNYSRCYTCQVSNSVSSKNGTVCLS 212
C G+ + + TW R E E TL H R + S ++ S T
Sbjct: 329 CEASGDPIPSITWRTSTRNISSE------EKTLDGHMVVRSHARVSSLTLKSIQYTDAGE 382
Query: 213 PPCTLARSFGVEWIASWLVV 232
CT + + G + + +L V
Sbjct: 383 YICTASNTIGQDSQSMYLEV 402
>gi|194328712 pregnancy specific beta-1-glycoprotein 8 isoform c
[Homo sapiens]
Length = 297
Score = 39.7 bits (91), Expect = 0.002
Identities = 24/121 (19%), Positives = 50/121 (41%), Gaps = 6/121 (4%)
Query: 84 RVRLDPQSGALYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQVLDPVPKPVIKIEKIED 143
R++L + L++ V K Y + + L +L +PKP I I ++
Sbjct: 70 RLQLSETNRTLFLLGVTKYTAGPYECEIRNPVSASRSDPFTLNLLPKLPKPYITINNLKP 129
Query: 144 MDDNCYLKLSCVIPGESVNYTWYGDKRPFP------KELQNSVLETTLMPHNYSRCYTCQ 197
++ L +C E+ Y W+ + + P + ++N +L + N + Y C+
Sbjct: 130 RENKDVLNFTCEPKSENYTYIWWLNGQSLPVSPRVKRPIENRILILPSVTRNETGPYQCE 189
Query: 198 V 198
+
Sbjct: 190 I 190
Score = 30.8 bits (68), Expect = 1.1
Identities = 28/103 (27%), Positives = 41/103 (39%), Gaps = 12/103 (11%)
Query: 121 WKIKLQVLDPVPKPVIKIEKIEDMDDNCYLKLSCVIPGESVNYTWY--GDKRPFPKELQN 178
WK L ++ PKP I K+ + + L+C +Y W+ G P LQ
Sbjct: 15 WKGLLLTVE-TPKPSISSSKLNPREAMEAVSLTCDPETPDASYLWWMNGQSLPMSHRLQL 73
Query: 179 SVLETTLMPHNYSRC----YTCQVSNSVSSKNGTVCLSPPCTL 217
S TL ++ Y C++ N VS+ S P TL
Sbjct: 74 SETNRTLFLLGVTKYTAGPYECEIRNPVSASR-----SDPFTL 111
>gi|194328710 pregnancy specific beta-1-glycoprotein 8 isoform b
[Homo sapiens]
Length = 419
Score = 39.7 bits (91), Expect = 0.002
Identities = 24/121 (19%), Positives = 50/121 (41%), Gaps = 6/121 (4%)
Query: 84 RVRLDPQSGALYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQVLDPVPKPVIKIEKIED 143
R++L + L++ V K Y + + L +L +PKP I I ++
Sbjct: 192 RLQLSETNRTLFLLGVTKYTAGPYECEIRNPVSASRSDPFTLNLLPKLPKPYITINNLKP 251
Query: 144 MDDNCYLKLSCVIPGESVNYTWYGDKRPFP------KELQNSVLETTLMPHNYSRCYTCQ 197
++ L +C E+ Y W+ + + P + ++N +L + N + Y C+
Sbjct: 252 RENKDVLNFTCEPKSENYTYIWWLNGQSLPVSPRVKRPIENRILILPSVTRNETGPYQCE 311
Query: 198 V 198
+
Sbjct: 312 I 312
Score = 35.8 bits (81), Expect = 0.035
Identities = 46/207 (22%), Positives = 76/207 (36%), Gaps = 39/207 (18%)
Query: 34 TVVSGSNVTLNISESLPENYKQLTWF-------------YTFDQKIVEWDSRKSKYFESK 80
T VS L + +LP+N W+ Y D +I+ +
Sbjct: 43 TKVSEGKDVLLLVHNLPQNLTGYIWYKGQIRDLYHYITSYVVDGQII--------IYGPA 94
Query: 81 FKGRVRLDPQSGALYISKVQKEDNSTYIMRVL----KKTGNEQEWKIKLQVLDPVPKPVI 136
+ GR + + +L I V +ED +Y + ++ + G + L + PKP I
Sbjct: 95 YSGRETIY-SNASLLIQNVTQEDAGSYTLHIIMGGDENRGVTGHFTFTLYL--ETPKPSI 151
Query: 137 KIEKIEDMDDNCYLKLSCVIPGESVNYTWY--GDKRPFPKELQNSVLETTLMPHNYSRC- 193
K+ + + L+C +Y W+ G P LQ S TL ++
Sbjct: 152 SSSKLNPREAMEAVSLTCDPETPDASYLWWMNGQSLPMSHRLQLSETNRTLFLLGVTKYT 211
Query: 194 ---YTCQVSNSVSSKNGTVCLSPPCTL 217
Y C++ N VS+ S P TL
Sbjct: 212 AGPYECEIRNPVSASR-----SDPFTL 233
>gi|51510887 pregnancy specific beta-1-glycoprotein 8 isoform a
[Homo sapiens]
Length = 426
Score = 39.7 bits (91), Expect = 0.002
Identities = 24/121 (19%), Positives = 50/121 (41%), Gaps = 6/121 (4%)
Query: 84 RVRLDPQSGALYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQVLDPVPKPVIKIEKIED 143
R++L + L++ V K Y + + L +L +PKP I I ++
Sbjct: 192 RLQLSETNRTLFLLGVTKYTAGPYECEIRNPVSASRSDPFTLNLLPKLPKPYITINNLKP 251
Query: 144 MDDNCYLKLSCVIPGESVNYTWYGDKRPFP------KELQNSVLETTLMPHNYSRCYTCQ 197
++ L +C E+ Y W+ + + P + ++N +L + N + Y C+
Sbjct: 252 RENKDVLNFTCEPKSENYTYIWWLNGQSLPVSPRVKRPIENRILILPSVTRNETGPYQCE 311
Query: 198 V 198
+
Sbjct: 312 I 312
Score = 35.8 bits (81), Expect = 0.035
Identities = 46/207 (22%), Positives = 76/207 (36%), Gaps = 39/207 (18%)
Query: 34 TVVSGSNVTLNISESLPENYKQLTWF-------------YTFDQKIVEWDSRKSKYFESK 80
T VS L + +LP+N W+ Y D +I+ +
Sbjct: 43 TKVSEGKDVLLLVHNLPQNLTGYIWYKGQIRDLYHYITSYVVDGQII--------IYGPA 94
Query: 81 FKGRVRLDPQSGALYISKVQKEDNSTYIMRVL----KKTGNEQEWKIKLQVLDPVPKPVI 136
+ GR + + +L I V +ED +Y + ++ + G + L + PKP I
Sbjct: 95 YSGRETIY-SNASLLIQNVTQEDAGSYTLHIIMGGDENRGVTGHFTFTLYL--ETPKPSI 151
Query: 137 KIEKIEDMDDNCYLKLSCVIPGESVNYTWY--GDKRPFPKELQNSVLETTLMPHNYSRC- 193
K+ + + L+C +Y W+ G P LQ S TL ++
Sbjct: 152 SSSKLNPREAMEAVSLTCDPETPDASYLWWMNGQSLPMSHRLQLSETNRTLFLLGVTKYT 211
Query: 194 ---YTCQVSNSVSSKNGTVCLSPPCTL 217
Y C++ N VS+ S P TL
Sbjct: 212 AGPYECEIRNPVSASR-----SDPFTL 233
>gi|109240546 pregnancy specific beta-1-glycoprotein 3 [Homo
sapiens]
Length = 428
Score = 39.7 bits (91), Expect = 0.002
Identities = 53/235 (22%), Positives = 88/235 (37%), Gaps = 39/235 (16%)
Query: 6 WDSCLALELLLLPLSLLVTSIQGHLVHMTVVSGSNVTLNISESLPENYKQLTWF------ 59
W L LLL +L T+ T VS L + +LP+N W+
Sbjct: 15 WKGLLLTALLLNFWNLPTTAQVTIEAEPTKVSKGKDVLLLVHNLPQNLAGYIWYKGQMKD 74
Query: 60 -------YTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGALYISKVQKEDNSTYIMRVL 112
Y D +I+ + + GR + + +L I V +ED +Y + ++
Sbjct: 75 LYHYITSYVVDGQII--------IYGPAYSGRETVY-SNASLLIQNVTREDAGSYTLHIV 125
Query: 113 KK----TGNEQEWKIKLQVLDPVPKPVIKIEKIEDMDDNCYLKLSCVIPGESVNYTWYGD 168
K+ G + L + PKP I + +D + L+C +Y W+ +
Sbjct: 126 KRGDGTRGETGHFTFTLYL--ETPKPSISSSNLYPREDMEAVSLTCDPETPDASYLWWMN 183
Query: 169 KR--PFPKELQNSVLETTLMPHNYSRC----YTCQVSNSVSSKNGTVCLSPPCTL 217
+ P LQ S + TL ++ Y C++ N VS+ S P TL
Sbjct: 184 GQSLPMTHSLQLSKNKRTLFLFGVTKYTAGPYECEIRNPVSASR-----SDPVTL 233
Score = 38.5 bits (88), Expect = 0.005
Identities = 23/122 (18%), Positives = 49/122 (40%), Gaps = 6/122 (4%)
Query: 85 VRLDPQSGALYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQVLDPVPKPVIKIEKIEDM 144
++L L++ V K Y + + + L +L +PKP I I +
Sbjct: 193 LQLSKNKRTLFLFGVTKYTAGPYECEIRNPVSASRSDPVTLNLLPKLPKPYITINNLNPR 252
Query: 145 DDNCYLKLSCVIPGESVNYTWYGDKRPFP------KELQNSVLETTLMPHNYSRCYTCQV 198
++ L +C E+ Y W+ + + P + ++N +L + N + Y C++
Sbjct: 253 ENKDVLAFTCEPKSENYTYIWWLNGQSLPVSPRVKRPIENRILILPSVTRNETGPYQCEI 312
Query: 199 SN 200
+
Sbjct: 313 QD 314
>gi|21361392 pregnancy specific beta-1-glycoprotein 1 [Homo sapiens]
Length = 426
Score = 38.9 bits (89), Expect = 0.004
Identities = 23/120 (19%), Positives = 49/120 (40%), Gaps = 6/120 (5%)
Query: 85 VRLDPQSGALYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQVLDPVPKPVIKIEKIEDM 144
++L + L++ V K Y + + + L +L +PKP I I +
Sbjct: 193 LKLSETNRTLFLLGVTKYTAGPYECEIRNPVSASRSDPVTLNLLPKLPKPYITINNLNPR 252
Query: 145 DDNCYLKLSCVIPGESVNYTWYGDKRPFP------KELQNSVLETTLMPHNYSRCYTCQV 198
++ L +C E+ Y W+ + + P + ++N +L + N + Y C++
Sbjct: 253 ENKDVLNFTCEPKSENYTYIWWLNGQSLPVSPRVKRPIENRILILPSVTRNETGPYQCEI 312
Score = 31.6 bits (70), Expect = 0.65
Identities = 42/205 (20%), Positives = 74/205 (36%), Gaps = 35/205 (17%)
Query: 34 TVVSGSNVTLNISESLPENYKQLTWF-------------YTFDQKIVEWDSRKSKYFESK 80
T VS L + +LP+N W+ Y D +I+ +
Sbjct: 43 TKVSEGKDVLLLVHNLPQNLTGYIWYKGQMRDLYHYITSYVVDGEII--------IYGPA 94
Query: 81 FKGRVRLDPQSGALYISKVQKEDNSTYIMRVLKKTGNEQ--EWKIKLQVLDPVPKPVIKI 138
+ GR + +L I V +ED +Y + ++K + + + PKP I
Sbjct: 95 YSGR-ETAYSNASLLIQNVTREDAGSYTLHIIKGDDGTRGVTGRFTFTLHLETPKPSISS 153
Query: 139 EKIEDMDDNCYLKLSCVIPGESVNYTWYGDKR--PFPKELQNSVLETTLMPHNYSRC--- 193
+ + + L+C +Y W+ + + P L+ S TL ++
Sbjct: 154 SNLNPRETMEAVSLTCDPETPDASYLWWMNGQSLPMTHSLKLSETNRTLFLLGVTKYTAG 213
Query: 194 -YTCQVSNSVSSKNGTVCLSPPCTL 217
Y C++ N VS+ S P TL
Sbjct: 214 PYECEIRNPVSASR-----SDPVTL 233
>gi|4502687 CD84 molecule [Homo sapiens]
Length = 328
Score = 38.9 bits (89), Expect = 0.004
Identities = 46/216 (21%), Positives = 83/216 (38%), Gaps = 14/216 (6%)
Query: 36 VSGSNVTLNISESLPENYKQLTWFY-TFDQKIVEWDSRKSKYF---ESKFKGRVRLDPQS 91
+ G +VT ++ P K + W T + DS + + R+ +
Sbjct: 32 ILGESVTFPVNIQEPRQVKIIAWTSKTSVAYVTPGDSETAPVVTVTHRNYYERIHALGPN 91
Query: 92 GALYISKVQKEDNSTYIMRVLKKTGNEQEWK-IKLQVLDPVPKPVIKIEKIEDMDDNCYL 150
L IS ++ ED Y + + K LQ+ + KP I + ++ C +
Sbjct: 92 YNLVISDLRMEDAGDYKADINTQADPYTTTKRYNLQIYRRLGKPKITQSLMASVNSTCNV 151
Query: 151 KLSCVIPGE--SVNYTWYGDKRPFPKELQNSVLETTLMPHNYSRCYTCQVSNSVSSKNGT 208
L+C + E +V Y W P + +VL+ P + YTC N VS+ + +
Sbjct: 152 TLTCSVEKEEKNVTYNW------SPLGEEGNVLQIFQTPEDQELTYTCTAQNPVSNNSDS 205
Query: 209 VCLSPPCT-LARSFGVEWIASWLVVTVPTILGLLLT 243
+ C +A F V+ + +L L+L+
Sbjct: 206 ISARQLCADIAMGFRTHHTGLLSVLAMFFLLVLILS 241
>gi|52317156 carcinoembryonic antigen-related cell adhesion molecule
isoform 2 [Homo sapiens]
Length = 292
Score = 38.5 bits (88), Expect = 0.005
Identities = 45/184 (24%), Positives = 73/184 (39%), Gaps = 20/184 (10%)
Query: 35 VVSGSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESK--------FKGRVR 86
V G NV L++ LPEN W+ K VE + + Y + GR
Sbjct: 45 VAEGENVHLSVVY-LPENLYSYGWY---KGKTVEPNQLIAAYVIDTHVRTPGPAYSGRET 100
Query: 87 LDPQSGALYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQVLDPVPKPVIKIEKIEDMDD 146
+ P SG L+ V ED Y ++V + ++ L+V + V +P I+ +
Sbjct: 101 ISP-SGDLHFQNVTLEDTGYYNLQVTYRNSQIEQASHHLRVYESVAQPSIQASSTTVTEK 159
Query: 147 NCYLKLSCVIPGESVNYTWY--GDKRPFPKELQ----NSVLETTLMPHNYSRCYTCQVSN 200
+ L+C ++ W + K ++ N VL + + Y C+VSN
Sbjct: 160 GSVV-LTCHTNNTGTSFQWIFNNQRLQVTKRMKLSWFNHVLTIDPIRQEDAGEYQCEVSN 218
Query: 201 SVSS 204
VSS
Sbjct: 219 PVSS 222
>gi|148612793 carcinoembryonic antigen-related cell adhesion
molecule isoform 1 [Homo sapiens]
Length = 293
Score = 38.5 bits (88), Expect = 0.005
Identities = 45/184 (24%), Positives = 73/184 (39%), Gaps = 20/184 (10%)
Query: 35 VVSGSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESK--------FKGRVR 86
V G NV L++ LPEN W+ K VE + + Y + GR
Sbjct: 45 VAEGENVHLSVVY-LPENLYSYGWY---KGKTVEPNQLIAAYVIDTHVRTPGPAYSGRET 100
Query: 87 LDPQSGALYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQVLDPVPKPVIKIEKIEDMDD 146
+ P SG L+ V ED Y ++V + ++ L+V + V +P I+ +
Sbjct: 101 ISP-SGDLHFQNVTLEDTGYYNLQVTYRNSQIEQASHHLRVYESVAQPSIQASSTTVTEK 159
Query: 147 NCYLKLSCVIPGESVNYTWY--GDKRPFPKELQ----NSVLETTLMPHNYSRCYTCQVSN 200
+ L+C ++ W + K ++ N VL + + Y C+VSN
Sbjct: 160 GSVV-LTCHTNNTGTSFQWIFNNQRLQVTKRMKLSWFNHVLTIDPIRQEDAGEYQCEVSN 218
Query: 201 SVSS 204
VSS
Sbjct: 219 PVSS 222
>gi|115529482 neural cell adhesion molecule 1 isoform 2 [Homo
sapiens]
Length = 858
Score = 38.1 bits (87), Expect = 0.007
Identities = 53/204 (25%), Positives = 82/204 (40%), Gaps = 24/204 (11%)
Query: 40 NVTLNISESLP-----ENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGAL 94
N T N+ +S+ E + + T +T D + +E + KY S S L
Sbjct: 222 NATANLGQSVTLVCDAEGFPEPTMSWTKDGEQIEQEEDDEKYIFSD---------DSSQL 272
Query: 95 YISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQVLDPVPKPVIK-IEKIEDMDDNCYLKLS 153
I KV K D + YI K G EQ+ I L+V KP I +E M+ + L+
Sbjct: 273 TIKKVDKNDEAEYICIAENKAG-EQDATIHLKVF---AKPKITYVENQTAMELEEQVTLT 328
Query: 154 CVIPGESV-NYTWYGDKRPFPKELQNS----VLETTLMPHNYSRCYTCQVSNSVSSKNGT 208
C G+ + + TW R E + S + TL H R + S ++ S T
Sbjct: 329 CEASGDPIPSITWRTSTRNISSEEKASWTRPEKQETLDGHMVVRSHARVSSLTLKSIQYT 388
Query: 209 VCLSPPCTLARSFGVEWIASWLVV 232
CT + + G + + +L V
Sbjct: 389 DAGEYICTASNTIGQDSQSMYLEV 412
>gi|156616284 pregnancy specific beta-1-glycoprotein 9 [Homo
sapiens]
Length = 426
Score = 37.7 bits (86), Expect = 0.009
Identities = 24/121 (19%), Positives = 49/121 (40%), Gaps = 6/121 (4%)
Query: 84 RVRLDPQSGALYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQVLDPVPKPVIKIEKIED 143
R++L + LY+ V K Y + + + L +L +P P I I +
Sbjct: 192 RLQLSKTNRTLYLFGVTKYIAGPYECEIRNPVSASRSDPVTLNLLPKLPIPYITINNLNP 251
Query: 144 MDDNCYLKLSCVIPGESVNYTWYGDKRPFP------KELQNSVLETTLMPHNYSRCYTCQ 197
++ L +C E+ Y W+ + + P + ++N +L + N + Y C+
Sbjct: 252 RENKDVLAFTCEPKSENYTYIWWLNGQSLPVSPGVKRPIENRILILPSVTRNETGPYQCE 311
Query: 198 V 198
+
Sbjct: 312 I 312
>gi|145309328 papilin [Homo sapiens]
Length = 1251
Score = 37.7 bits (86), Expect = 0.009
Identities = 39/142 (27%), Positives = 61/142 (42%), Gaps = 13/142 (9%)
Query: 84 RVRLDPQSGALYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQVLDPVPKPVIKIEKIED 143
R +L P G+L IS+V ED Y +Q W ++L+VL + + +
Sbjct: 1061 RHQLQPD-GSLVISRVAVEDGGFYTCVAFNGQDRDQRW-VQLRVLGELT--ISGLPPTVT 1116
Query: 144 MDDNCYLKLSCVIPGESVNYTWYGDKRPFPKE--LQNSVLETTLMPHNY----SRCYTC- 196
+ + +L CV+ GESVN W + P + + + TL+ +N YTC
Sbjct: 1117 VPEGDTARLLCVVAGESVNIRWSRNGLPVQADGHRVHQSPDGTLLIYNLRARDEGSYTCS 1176
Query: 197 --QVSNSVSSKNGTVCLSPPCT 216
Q S +VS +SP T
Sbjct: 1177 AYQGSQAVSRSTEVKVVSPAPT 1198
>gi|5901930 carcinoembryonic antigen-related cell adhesion molecule
7 [Homo sapiens]
Length = 265
Score = 37.7 bits (86), Expect = 0.009
Identities = 34/141 (24%), Positives = 55/141 (39%), Gaps = 12/141 (8%)
Query: 83 GRVRLDPQSGALYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQVLDPVPKPVIKIEKIE 142
GR + P +G L I V D Y + V+K+ +E + V PKP I
Sbjct: 98 GRETIYP-NGTLLIQNVTHNDAGFYTLHVIKENLVNEEVTRQFYVFSEPPKPSITSNNFN 156
Query: 143 DMDDNCYLKLSCVIPGESVNYTWYGDKRPF---PKEL---QNSVLETTLMPHNYSRCYTC 196
+++ + L+C ++ Y W+ + + P+ L N L N Y C
Sbjct: 157 PVENKDIVVLTCQPETQNTTYLWWVNNQSLLVSPRLLLSTDNRTLVLLSATKNDIGPYEC 216
Query: 197 QVSNSVSSKNGTVCLSPPCTL 217
++ N V + S P TL
Sbjct: 217 EIQNPVGASR-----SDPVTL 232
>gi|226342990 SLAM family member 9 isoform 1 [Homo sapiens]
Length = 289
Score = 37.4 bits (85), Expect = 0.012
Identities = 29/127 (22%), Positives = 56/127 (44%), Gaps = 3/127 (2%)
Query: 81 FKGRVRLDPQSGALYISKVQKEDNSTYIMRVLKKTGN-EQEWKIKLQVLDPVPKPVIKIE 139
++G+V S +L+IS + ED+ Y +V +T + + V + +P I +
Sbjct: 82 YQGQVSFLDPSYSLHISNLSWEDSGLYQAQVNLRTSQISTMQQYNICVYRWLSEPQITVN 141
Query: 140 KIEDMDDNCYLKLSCVI--PGESVNYTWYGDKRPFPKELQNSVLETTLMPHNYSRCYTCQ 197
+ C + L C + G + Y+W + VL T+ P + + YTC+
Sbjct: 142 FESSGEGACSMSLVCSVEKAGMDMTYSWLSRGDSTYTFHEGPVLSTSWRPGDSALSYTCR 201
Query: 198 VSNSVSS 204
+N +S+
Sbjct: 202 ANNPISN 208
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.134 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,808,826
Number of Sequences: 37866
Number of extensions: 423131
Number of successful extensions: 1149
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 80
Number of HSP's that attempted gapping in prelim test: 1043
Number of HSP's gapped (non-prelim): 189
length of query: 243
length of database: 18,247,518
effective HSP length: 99
effective length of query: 144
effective length of database: 14,498,784
effective search space: 2087824896
effective search space used: 2087824896
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.