Guide to the Human Genome
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Name: SLAMF8 Sequence: fasta or formatted (285aa) NCBI GI: 9910342
Description:

SLAM family member 8

Referenced in:

Hematopoiesis and Erythrocytes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3         18           2
 C cysteine            2.1          6           1
 D aspartate           4.9         14           1
 E glutamate           4.9         14           2
 F phenylalanine       3.5         10           2
 G glycine             6.0         17           2
 H histidine           2.5          7           2
 I isoleucine          2.5          7           1
 K lysine              3.2          9           4
 L leucine            13.0         37           3
 M methionine          2.1          6           1
 N asparagine          1.8          5           1
 P proline             7.4         21           2
 Q glutamine           3.9         11           1
 R arginine            4.9         14           2
 S serine              9.5         27           1
 T threonine           5.6         16           2
 V valine             10.5         30           3
 W tryptophan          3.9         11           1
 Y tyrosine            1.8          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   SLAM family member 8 
SLAMF1                0.078   signaling lymphocytic activation molecule family memb...
CD84                  0.062   CD84 molecule 
CD244                 0.059   CD244 natural killer cell receptor 2B4 
CD48                  0.053   CD48 molecule 
SLAMF7                0.052   SLAM family member 7 
HEPACAM               0.039   hepatocyte cell adhesion molecule 
SLAMF9                0.036   SLAM family member 9 isoform 1 
HEPACAM2              0.034   HEPACAM family member 2 isoform 2 
HEPACAM2              0.034   HEPACAM family member 2 isoform 1 
LY9                   0.034   lymphocyte antigen 9 isoform a 
LOC100292387          0.020   PREDICTED: similar to hemicentin 2 
HMCN2                 0.020   PREDICTED: hemicentin 2 
LOC100289200          0.020   PREDICTED: hypothetical protein XP_002342997 
CEACAM6               0.020   carcinoembryonic antigen-related cell adhesion molec...
MDGA2                 0.016   MAM domain containing 1 isoform 1 
CD22                  0.016   CD22 molecule 
CD276                 0.014   CD276 antigen isoform b 
CEACAM1               0.014   carcinoembryonic antigen-related cell adhesion molec...
CEACAM1               0.014   carcinoembryonic antigen-related cell adhesion molec...
CEACAM5               0.014   carcinoembryonic antigen-related cell adhesion molec...
HMCN1                 0.014   hemicentin 1 
PSG3                  0.014   pregnancy specific beta-1-glycoprotein 3 
HMCN2                 0.012   PREDICTED: hemicentin 2 
HMCN2                 0.012   PREDICTED: hemicentin 2 
CD276                 0.012   CD276 antigen isoform a 
CEACAM8               0.012   carcinoembryonic antigen-related cell adhesion molec...
PSG8                  0.012   pregnancy specific beta-1-glycoprotein 8 isoform b ...
PSG8                  0.012   pregnancy specific beta-1-glycoprotein 8 isoform a [...
PSG5                  0.012   pregnancy specific beta-1-glycoprotein 5 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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