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Search of human proteins with 8922633
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|8922633 high-mobility group 20A [Homo sapiens]
(347 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|8922633 high-mobility group 20A [Homo sapiens] 691 0.0
gi|83715964 high-mobility group 20B [Homo sapiens] 294 7e-80
gi|4507241 structure specific recognition protein 1 [Homo sapiens] 72 6e-13
gi|71143137 high-mobility group box 3 [Homo sapiens] 70 3e-12
gi|4504425 high-mobility group box 1 [Homo sapiens] 67 2e-11
gi|113421073 PREDICTED: similar to high mobility group box 3 [Ho... 67 2e-11
gi|113420668 PREDICTED: similar to high mobility group box 3 [Ho... 67 2e-11
gi|169184027 PREDICTED: similar to high mobility group box 3 [Ho... 66 5e-11
gi|194688135 high-mobility group box 2 [Homo sapiens] 65 1e-10
gi|194688133 high-mobility group box 2 [Homo sapiens] 65 1e-10
gi|11321591 high-mobility group box 2 [Homo sapiens] 65 1e-10
gi|7657671 upstream binding transcription factor, RNA polymerase... 64 3e-10
gi|7662322 thymus high mobility group box protein TOX [Homo sapi... 63 3e-10
gi|149408144 TOX high mobility group box family member 2 isoform... 63 4e-10
gi|149408141 TOX high mobility group box family member 2 isoform... 63 4e-10
gi|14249636 TOX high mobility group box family member 2 isoform ... 63 4e-10
gi|115529449 upstream binding transcription factor, RNA polymera... 63 4e-10
gi|115529451 upstream binding transcription factor, RNA polymera... 63 4e-10
gi|169202818 PREDICTED: similar to hCG1991922 [Homo sapiens] 62 6e-10
gi|239749996 PREDICTED: similar to hCG1991922 [Homo sapiens] 62 6e-10
gi|239742753 PREDICTED: similar to high mobility group box 3 iso... 62 6e-10
gi|21264355 SWI/SNF-related matrix-associated actin-dependent re... 62 6e-10
gi|226246533 TOX high mobility group box family member 3 isoform... 62 8e-10
gi|226054295 TOX high mobility group box family member 3 isoform... 62 8e-10
gi|169212060 PREDICTED: high mobility group protein B3-like prot... 62 8e-10
gi|239745831 PREDICTED: high mobility group protein B3-like prot... 62 8e-10
gi|239744307 PREDICTED: similar to hCG1991922 [Homo sapiens] 62 1e-09
gi|56806673 high-mobility group box 1-like 1 [Homo sapiens] 62 1e-09
gi|19923236 nuclear antigen Sp100 isoform 2 [Homo sapiens] 61 2e-09
gi|169217198 PREDICTED: similar to hCG1644442 [Homo sapiens] 60 4e-09
>gi|8922633 high-mobility group 20A [Homo sapiens]
Length = 347
Score = 691 bits (1782), Expect = 0.0
Identities = 347/347 (100%), Positives = 347/347 (100%)
Query: 1 MENLMTSSTLPPLFADEDGSKESNDLATTGLNHPEVPYSSGATSSTNNPEFVEDLSQGQL 60
MENLMTSSTLPPLFADEDGSKESNDLATTGLNHPEVPYSSGATSSTNNPEFVEDLSQGQL
Sbjct: 1 MENLMTSSTLPPLFADEDGSKESNDLATTGLNHPEVPYSSGATSSTNNPEFVEDLSQGQL 60
Query: 61 LQSESSNAAEGNEQRHEDEQRSKRGGWSKGRKRKKPLRDSNAPKSPLTGYVRFMNERREQ 120
LQSESSNAAEGNEQRHEDEQRSKRGGWSKGRKRKKPLRDSNAPKSPLTGYVRFMNERREQ
Sbjct: 61 LQSESSNAAEGNEQRHEDEQRSKRGGWSKGRKRKKPLRDSNAPKSPLTGYVRFMNERREQ 120
Query: 121 LRAKRPEVPFPEITRMLGNEWSKLPPEEKQRYLDEADRDKERYMKELEQYQKTEAYKVFS 180
LRAKRPEVPFPEITRMLGNEWSKLPPEEKQRYLDEADRDKERYMKELEQYQKTEAYKVFS
Sbjct: 121 LRAKRPEVPFPEITRMLGNEWSKLPPEEKQRYLDEADRDKERYMKELEQYQKTEAYKVFS 180
Query: 181 RKTQDRQKGKSHRQDAARQATHDHEKETEVKERSVFDIPIFTEEFLNHSKAREAELRQLR 240
RKTQDRQKGKSHRQDAARQATHDHEKETEVKERSVFDIPIFTEEFLNHSKAREAELRQLR
Sbjct: 181 RKTQDRQKGKSHRQDAARQATHDHEKETEVKERSVFDIPIFTEEFLNHSKAREAELRQLR 240
Query: 241 KSNMEFEERNAALQKHVESMRTAVEKLEVDVIQERSRNTVLQQHLETLRQVLTSSFASMP 300
KSNMEFEERNAALQKHVESMRTAVEKLEVDVIQERSRNTVLQQHLETLRQVLTSSFASMP
Sbjct: 241 KSNMEFEERNAALQKHVESMRTAVEKLEVDVIQERSRNTVLQQHLETLRQVLTSSFASMP 300
Query: 301 LPGSGETPTVDTIDSYMNRLHSIILANPQDNENFIATVREVVNRLDR 347
LPGSGETPTVDTIDSYMNRLHSIILANPQDNENFIATVREVVNRLDR
Sbjct: 301 LPGSGETPTVDTIDSYMNRLHSIILANPQDNENFIATVREVVNRLDR 347
>gi|83715964 high-mobility group 20B [Homo sapiens]
Length = 317
Score = 294 bits (753), Expect = 7e-80
Identities = 146/281 (51%), Positives = 196/281 (69%), Gaps = 3/281 (1%)
Query: 62 QSESSNAAEGNEQRHEDEQRSKRGGWSKGRKRKKPLRDSNAPKSPLTGYVRFMNERREQL 121
Q G + HE+E KRG W KG+KRKK L N PK+P+TGYVRF+NERREQ+
Sbjct: 32 QERGEGPRAGEKGSHEEEPVKKRG-WPKGKKRKKIL--PNGPKAPVTGYVRFLNERREQI 88
Query: 122 RAKRPEVPFPEITRMLGNEWSKLPPEEKQRYLDEADRDKERYMKELEQYQKTEAYKVFSR 181
R + P++PFPEIT+MLG EWSKL P EKQRYLDEA+R+K++YMKEL YQ++EAYK+ +
Sbjct: 89 RTRHPDLPFPEITKMLGAEWSKLQPTEKQRYLDEAEREKQQYMKELRAYQQSEAYKMCTE 148
Query: 182 KTQDRQKGKSHRQDAARQATHDHEKETEVKERSVFDIPIFTEEFLNHSKAREAELRQLRK 241
K Q+++ K + K + S FD+PIFTEEFL+ +KAREAELR+LRK
Sbjct: 149 KIQEKKIKKEDSSSGLMNTLLNGHKGGDCDGFSTFDVPIFTEEFLDQNKAREAELRRLRK 208
Query: 242 SNMEFEERNAALQKHVESMRTAVEKLEVDVIQERSRNTVLQQHLETLRQVLTSSFASMPL 301
N+ FEE+NA LQ+H +SM +A E+LE ++ E R LQQ L+ +RQ LT+SFAS+P+
Sbjct: 209 MNVAFEEQNAVLQRHTQSMSSARERLEQELALEERRTLALQQQLQAVRQALTASFASLPV 268
Query: 302 PGSGETPTVDTIDSYMNRLHSIILANPQDNENFIATVREVV 342
PG+GETPT+ T+D YM RLH I +P +E I ++E++
Sbjct: 269 PGTGETPTLGTLDFYMARLHGAIERDPAQHEKLIVRIKEIL 309
>gi|4507241 structure specific recognition protein 1 [Homo sapiens]
Length = 709
Score = 72.4 bits (176), Expect = 6e-13
Identities = 62/239 (25%), Positives = 110/239 (46%), Gaps = 14/239 (5%)
Query: 21 KESNDLATTGLNHPEVPYSSGATSSTNNPEFVEDLSQG-QLLQSESSNAAEGNEQRHEDE 79
KE + N S N E ED+++ S SS++ EG+ R E +
Sbjct: 457 KEEGKIREENANDSSDDSGEETDESFNPGEEEEDVAEEFDSNASASSSSNEGDSDRDEKK 516
Query: 80 QRS-KRGGWSKGRK-RKKPL-----RDSNAPKSPLTGYVRFMNERREQLRAKRPEVPFPE 132
++ K+ +K RK RKKP+ +D NAPK P++ Y+ ++N RE++++ P + +
Sbjct: 517 RKQLKKAKMAKDRKSRKKPVEVKKGKDPNAPKRPMSAYMLWLNASREKIKSDHPGISITD 576
Query: 133 ITRMLGNEW---SKLPPEEKQRYLDEADRDKERYMKELEQYQKTEAYKVFSRKTQDRQKG 189
+++ G W SK EE R ++A RD E+ MKE E + E+ K K + + K
Sbjct: 577 LSKKAGEIWKGMSKEKKEEWDRKAEDARRDYEKAMKEYEG-GRGESSKRDKSKKKKKVKV 635
Query: 190 KSHRQDAARQATHDHEKETEVKERSVFDIPIFTEEFLNHSKAREAELRQLRKSNMEFEE 248
K ++ + + ++ E F F + S +++ ++ R + E EE
Sbjct: 636 KMEKKSTPSRGSSSKSSSRQLSES--FKSKEFVSSDESSSGENKSKKKRRRSEDSEEEE 692
>gi|71143137 high-mobility group box 3 [Homo sapiens]
Length = 200
Score = 70.1 bits (170), Expect = 3e-12
Identities = 47/172 (27%), Positives = 80/172 (46%), Gaps = 14/172 (8%)
Query: 48 NPEFVEDLSQGQLLQSESSNAAEGNEQRHEDE----------QRSKRGGWSKGRKRKKPL 97
NPE + ++ SE G E+ DE + K G +KG K+KK
Sbjct: 31 NPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDREMKDYGPAKGGKKKK-- 88
Query: 98 RDSNAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKQRYLDEAD 157
D NAPK P +G+ F +E R ++++ P + ++ + LG W+ L EKQ Y+ +A
Sbjct: 89 -DPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYITKAA 147
Query: 158 RDKERYMKELEQYQKTEAYKVFSRKTQDRQKGKSHRQDAARQATHDHEKETE 209
+ KE+Y K++ Y+ + + +K K +D + + E+E E
Sbjct: 148 KLKEKYEKDVADYKSKGKFDGAKGPAKVARK-KVEEEDEEEEEEEEEEEEEE 198
Score = 50.4 bits (119), Expect = 2e-06
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 99 DSNAPKSPLTGYVRFMNERREQLRAKRPEVP--FPEITRMLGNEWSKLPPEEKQRYLDEA 156
D PK ++ Y F+ RE+ + K PEVP F E ++ W + +EK ++ + A
Sbjct: 5 DPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMA 64
Query: 157 DRDKERYMKELEQY 170
DK RY +E++ Y
Sbjct: 65 KADKVRYDREMKDY 78
>gi|4504425 high-mobility group box 1 [Homo sapiens]
Length = 215
Score = 67.0 bits (162), Expect = 2e-11
Identities = 46/182 (25%), Positives = 87/182 (47%), Gaps = 11/182 (6%)
Query: 44 SSTNNPEFVEDLSQGQLLQSESSNA-----AEGNEQRHEDEQRSKRGGWSKGRKRKKPLR 98
+S N EF + S+ S A+ ++ R+E E ++ KG +KK +
Sbjct: 34 ASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIP--PKGETKKK-FK 90
Query: 99 DSNAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKQRYLDEADR 158
D NAPK P + + F +E R +++ + P + ++ + LG W+ ++KQ Y +A +
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAK 150
Query: 159 DKERYMKELEQYQ---KTEAYKVFSRKTQDRQKGKSHRQDAARQATHDHEKETEVKERSV 215
KE+Y K++ Y+ K +A K K + +K K +D + + E++ E ++
Sbjct: 151 LKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEEDEEDEEDEEEEEDEEDEDEEE 210
Query: 216 FD 217
D
Sbjct: 211 DD 212
Score = 47.0 bits (110), Expect = 3e-05
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 99 DSNAPKSPLTGYVRFMNERREQLRAKRPE--VPFPEITRMLGNEWSKLPPEEKQRYLDEA 156
D P+ ++ Y F+ RE+ + K P+ V F E ++ W + +EK ++ D A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMA 64
Query: 157 DRDKERYMKELEQY--QKTEAYKVF 179
DK RY +E++ Y K E K F
Sbjct: 65 KADKARYEREMKTYIPPKGETKKKF 89
>gi|113421073 PREDICTED: similar to high mobility group box 3 [Homo
sapiens]
Length = 208
Score = 67.0 bits (162), Expect = 2e-11
Identities = 51/192 (26%), Positives = 89/192 (46%), Gaps = 18/192 (9%)
Query: 33 HPEVPYSSGATSSTNNPEFVEDLSQGQLLQSESSNAAEGNEQRHEDE----QRSKRGGWS 88
+PEVP N EF + S G+ S + E DE + K G +
Sbjct: 31 NPEVP--------VNFAEFSKKCS-GRWKTMSSKEKFKFGEMAKADEVCYDREMKDYGPA 81
Query: 89 KGRKRKKPLRDSNAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEE 148
KG K+K P NAPK P +G+ F +E R ++++ P + ++ + LG W+ L E
Sbjct: 82 KGGKKKDP----NAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSE 137
Query: 149 KQRYLDEADRDKERYMKELEQYQKTEAYKVFSRKTQDRQKGKSHRQDAARQATHDHEKET 208
KQ Y+ +A + KE+Y K++ + + R + +K K +D + + EK+
Sbjct: 138 KQPYVTKAAKLKEKYEKDVVDCKLKGKFYGAKRPAKVARK-KVEEEDEEDEEEEEKEKDE 196
Query: 209 EVKERSVFDIPI 220
E ++R+ + +
Sbjct: 197 EDEQRNCLSVSL 208
>gi|113420668 PREDICTED: similar to high mobility group box 3 [Homo
sapiens]
Length = 208
Score = 67.0 bits (162), Expect = 2e-11
Identities = 51/192 (26%), Positives = 89/192 (46%), Gaps = 18/192 (9%)
Query: 33 HPEVPYSSGATSSTNNPEFVEDLSQGQLLQSESSNAAEGNEQRHEDE----QRSKRGGWS 88
+PEVP N EF + S G+ S + E DE + K G +
Sbjct: 31 NPEVP--------VNFAEFSKKCS-GRWKTMSSKEKFKFGEMAKADEVCYDREMKDYGPA 81
Query: 89 KGRKRKKPLRDSNAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEE 148
KG K+K P NAPK P +G+ F +E R ++++ P + ++ + LG W+ L E
Sbjct: 82 KGGKKKDP----NAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSE 137
Query: 149 KQRYLDEADRDKERYMKELEQYQKTEAYKVFSRKTQDRQKGKSHRQDAARQATHDHEKET 208
KQ Y+ +A + KE+Y K++ + + R + +K K +D + + EK+
Sbjct: 138 KQPYVTKAAKLKEKYEKDVVDCKLKGKFYGAKRPAKVARK-KVEEEDEEDEEEEEKEKDE 196
Query: 209 EVKERSVFDIPI 220
E ++R+ + +
Sbjct: 197 EDEQRNCLSVSL 208
>gi|169184027 PREDICTED: similar to high mobility group box 3 [Homo
sapiens]
Length = 208
Score = 65.9 bits (159), Expect = 5e-11
Identities = 38/142 (26%), Positives = 73/142 (51%), Gaps = 5/142 (3%)
Query: 79 EQRSKRGGWSKGRKRKKPLRDSNAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLG 138
++ K G +KG K+K P NAPK P +G+ F +E R ++++ P + ++ + LG
Sbjct: 72 DREMKDYGPAKGGKKKDP----NAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLG 127
Query: 139 NEWSKLPPEEKQRYLDEADRDKERYMKELEQYQKTEAYKVFSRKTQDRQKGKSHRQDAAR 198
W+ L EKQ Y+ +A + KE+Y K++ + + R + +K K +D
Sbjct: 128 EMWNNLNDSEKQPYVTKAAKLKEKYEKDVVDCKLKGKFYGAKRPAKVARK-KVEEEDEED 186
Query: 199 QATHDHEKETEVKERSVFDIPI 220
+ + EK+ E ++R+ + +
Sbjct: 187 EEEEEKEKDEEDEQRNCLSVSL 208
Score = 32.3 bits (72), Expect = 0.64
Identities = 17/74 (22%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Query: 99 DSNAPKSPLTGYVRFMNERREQLRAKRPEV--PFPEITRMLGNEWSKLPPEEKQRYLDEA 156
D P+ ++ Y + ++ + K PEV F E ++ W + +EK ++ + A
Sbjct: 5 DPKKPQGKMSAYAFSVQTCCKEHKKKNPEVLVNFAEFSKKCSGRWKTMSSKEKFKFGEMA 64
Query: 157 DRDKERYMKELEQY 170
D+ Y +E++ Y
Sbjct: 65 KADEVCYDREMKDY 78
>gi|194688135 high-mobility group box 2 [Homo sapiens]
Length = 209
Score = 64.7 bits (156), Expect = 1e-10
Identities = 47/180 (26%), Positives = 91/180 (50%), Gaps = 16/180 (8%)
Query: 44 SSTNNPEFVEDLSQ-----GQLLQSESSNAAEGNEQRHEDEQRS--KRGGWSKGRKRKKP 96
SS N EF + S+ +S+ + A+ ++ R++ E ++ G KG+K+
Sbjct: 34 SSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKARYDREMKNYVPPKGDKKGKKK--- 90
Query: 97 LRDSNAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKQRYLDEA 156
D NAPK P + + F +E R +++++ P + + + LG WS+ ++KQ Y +A
Sbjct: 91 --DPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKA 148
Query: 157 DRDKERYMKELEQYQ---KTEAYKVF-SRKTQDRQKGKSHRQDAARQATHDHEKETEVKE 212
+ KE+Y K++ Y+ K+EA K R T ++K + ++ + + E+E + E
Sbjct: 149 AKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTGSKKKNEPEDEEEEEEEEDEDEEEEDEDE 208
Score = 50.8 bits (120), Expect = 2e-06
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Query: 99 DSNAPKSPLTGYVRFMNERREQLRAKRPE--VPFPEITRMLGNEWSKLPPEEKQRYLDEA 156
D N P+ ++ Y F+ RE+ + K P+ V F E ++ W + +EK ++ D A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 157 DRDKERYMKELEQYQKTEAYKVFSRKTQDRQK 188
DK RY +E++ Y + K +K + K
Sbjct: 65 KSDKARYDREMKNYVPPKGDKKGKKKDPNAPK 96
>gi|194688133 high-mobility group box 2 [Homo sapiens]
Length = 209
Score = 64.7 bits (156), Expect = 1e-10
Identities = 47/180 (26%), Positives = 91/180 (50%), Gaps = 16/180 (8%)
Query: 44 SSTNNPEFVEDLSQ-----GQLLQSESSNAAEGNEQRHEDEQRS--KRGGWSKGRKRKKP 96
SS N EF + S+ +S+ + A+ ++ R++ E ++ G KG+K+
Sbjct: 34 SSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKARYDREMKNYVPPKGDKKGKKK--- 90
Query: 97 LRDSNAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKQRYLDEA 156
D NAPK P + + F +E R +++++ P + + + LG WS+ ++KQ Y +A
Sbjct: 91 --DPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKA 148
Query: 157 DRDKERYMKELEQYQ---KTEAYKVF-SRKTQDRQKGKSHRQDAARQATHDHEKETEVKE 212
+ KE+Y K++ Y+ K+EA K R T ++K + ++ + + E+E + E
Sbjct: 149 AKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTGSKKKNEPEDEEEEEEEEDEDEEEEDEDE 208
Score = 50.8 bits (120), Expect = 2e-06
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Query: 99 DSNAPKSPLTGYVRFMNERREQLRAKRPE--VPFPEITRMLGNEWSKLPPEEKQRYLDEA 156
D N P+ ++ Y F+ RE+ + K P+ V F E ++ W + +EK ++ D A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 157 DRDKERYMKELEQYQKTEAYKVFSRKTQDRQK 188
DK RY +E++ Y + K +K + K
Sbjct: 65 KSDKARYDREMKNYVPPKGDKKGKKKDPNAPK 96
>gi|11321591 high-mobility group box 2 [Homo sapiens]
Length = 209
Score = 64.7 bits (156), Expect = 1e-10
Identities = 47/180 (26%), Positives = 91/180 (50%), Gaps = 16/180 (8%)
Query: 44 SSTNNPEFVEDLSQ-----GQLLQSESSNAAEGNEQRHEDEQRS--KRGGWSKGRKRKKP 96
SS N EF + S+ +S+ + A+ ++ R++ E ++ G KG+K+
Sbjct: 34 SSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKARYDREMKNYVPPKGDKKGKKK--- 90
Query: 97 LRDSNAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKQRYLDEA 156
D NAPK P + + F +E R +++++ P + + + LG WS+ ++KQ Y +A
Sbjct: 91 --DPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYEQKA 148
Query: 157 DRDKERYMKELEQYQ---KTEAYKVF-SRKTQDRQKGKSHRQDAARQATHDHEKETEVKE 212
+ KE+Y K++ Y+ K+EA K R T ++K + ++ + + E+E + E
Sbjct: 149 AKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTGSKKKNEPEDEEEEEEEEDEDEEEEDEDE 208
Score = 50.8 bits (120), Expect = 2e-06
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Query: 99 DSNAPKSPLTGYVRFMNERREQLRAKRPE--VPFPEITRMLGNEWSKLPPEEKQRYLDEA 156
D N P+ ++ Y F+ RE+ + K P+ V F E ++ W + +EK ++ D A
Sbjct: 5 DPNKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA 64
Query: 157 DRDKERYMKELEQYQKTEAYKVFSRKTQDRQK 188
DK RY +E++ Y + K +K + K
Sbjct: 65 KSDKARYDREMKNYVPPKGDKKGKKKDPNAPK 96
>gi|7657671 upstream binding transcription factor, RNA polymerase I
isoform a [Homo sapiens]
Length = 764
Score = 63.5 bits (153), Expect = 3e-10
Identities = 44/182 (24%), Positives = 93/182 (51%), Gaps = 20/182 (10%)
Query: 89 KGRKRKKPLRDSNAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEE 148
KG+K KK + PK PLT Y RF E+R + PE+ ++T++L ++ +LP ++
Sbjct: 101 KGKKLKK---HPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKK 157
Query: 149 KQRYLDEADRDKERYMKELEQYQKTEAYKVFSRKTQDRQKGKSHRQDAARQATHDHEKET 208
K +Y+ + R+K+ + + L ++++ + + K D + + +Q + HEK+
Sbjct: 158 KMKYIQDFQREKQEFERNLARFREDHPDLIQNAKKSDIPE----KPKTPQQLWYTHEKKV 213
Query: 209 EVKERSVFDIPIFTEEFLNHSKARE----AELRQLRKSNMEFEERNAALQKHVESMRTAV 264
+K R P T + + S ++ ++ ++L+ + E+R +++ E MR +
Sbjct: 214 YLKVR-----PDATTKEVKDSLGKQWSQLSDKKRLKWIHKALEQR----KEYEEIMRDYI 264
Query: 265 EK 266
+K
Sbjct: 265 QK 266
Score = 47.0 bits (110), Expect = 3e-05
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 94 KKPLRD-----SNAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEE 148
KKP ++ S PK P++ F E+R QL+ +RPE+ E+TR+L W+ L ++
Sbjct: 393 KKPAQEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWNDLSEKK 452
Query: 149 KQRY 152
K +Y
Sbjct: 453 KAKY 456
Score = 41.2 bits (95), Expect = 0.001
Identities = 33/154 (21%), Positives = 65/154 (42%), Gaps = 12/154 (7%)
Query: 69 AEGNEQRHEDEQRSKRGGWSKGRKRKKPLRDSNAPKSPLTGYVRFMNERREQLRAKRPEV 128
A +++R+E E R + KK K P+ GY +F E + +
Sbjct: 534 AAEDQKRYERELSEMRAPPAATNSSKKMKFQGEPKKPPMNGYQKFSQELLS--NGELNHL 591
Query: 129 PFPEITRMLGNEWSKLPPEEKQRYLDEADRDKERYMKELEQYQKT------EAYKVF--- 179
P E +G+ W ++ +K+ Y A+ +++Y L+ + K+ AYK +
Sbjct: 592 PLKERMVEIGSRWQRISQSQKEHYKKLAEEQQKQYKVHLDLWVKSLSPQDRAAYKEYISN 651
Query: 180 SRKTQDRQKGKSHRQD-AARQATHDHEKETEVKE 212
RK+ + +G + + Q+ + E++ E E
Sbjct: 652 KRKSMTKLRGPNPKSSRTTLQSKSESEEDDEEDE 685
Score = 39.7 bits (91), Expect = 0.004
Identities = 48/208 (23%), Positives = 82/208 (39%), Gaps = 27/208 (12%)
Query: 74 QRHEDEQRSKRG----GWSKGRKRKKPLRDSNAPKSPLTGYVRFMNERREQLRAKRPEVP 129
Q+H + S+ G +K ++ K D K P Y + E L A +VP
Sbjct: 265 QKHPELNISEEGITKSTLTKAERQLKDKFDGRPTKPPPNSYSLYCAE----LMANMKDVP 320
Query: 130 FPEITRMLGNEWSKLPPEEKQRYLDEADRDKERY----MKELEQYQKTEAYKVFSRKTQD 185
E + +W L +EK Y + D+ K+ Y ++ LE + E +V +
Sbjct: 321 STERMVLCSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRFLESLPEEEQQRVLGEEKML 380
Query: 186 RQKGKSHRQDAARQATHDHEK-ETEVKERSVFDIPIFTEEFL-----NHSKAREAELRQL 239
K A+++ + K +E +R V + IF+EE + E+EL +L
Sbjct: 381 NINKKQATSPASKKPAQEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRL 440
Query: 240 ---------RKSNMEFEERNAALQKHVE 258
K +++ R AAL+ E
Sbjct: 441 LARMWNDLSEKKKAKYKAREAALKAQSE 468
Score = 35.8 bits (81), Expect = 0.058
Identities = 32/130 (24%), Positives = 61/130 (46%), Gaps = 17/130 (13%)
Query: 54 DLSQGQLLQSESSNAA-EGNEQRHEDEQRSKRGGWSKGRKRKKPLRDSNAPKSPLTGYVR 112
DLS+ + + ++ AA + +R +R +RG + KR + + + L R
Sbjct: 447 DLSEKKKAKYKAREAALKAQSERKPGGEREERGKLPESPKRAEEIWQQSVIGDYLA---R 503
Query: 113 FMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKQRYLDEADRDKERYMKELEQYQK 172
F N+R + L+A E+T W+ + +EK ++ +A D++RY +EL + +
Sbjct: 504 FKNDRVKALKAM-------EMT------WNNMEKKEKLMWIKKAAEDQKRYERELSEMRA 550
Query: 173 TEAYKVFSRK 182
A S+K
Sbjct: 551 PPAATNSSKK 560
>gi|7662322 thymus high mobility group box protein TOX [Homo
sapiens]
Length = 526
Score = 63.2 bits (152), Expect = 3e-10
Identities = 37/149 (24%), Positives = 71/149 (47%), Gaps = 13/149 (8%)
Query: 32 NHPEVPYSSGATSSTNNPEFVEDLSQGQLLQSESSNAAEGNEQRHEDEQRSKRGGWSKGR 91
N P P S AT S ++ ++ + ++ G E+R + K K
Sbjct: 203 NSPSPPGSKSATPSPSSSVHEDE--------GDDTSKINGGEKRPASDMGKK----PKTP 250
Query: 92 KRKKPLRDSNAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKQR 151
K+KK +D N P+ P++ Y F + + ++ + P F E+++++ + W L E+KQ
Sbjct: 251 KKKKK-KDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDGLGEEQKQV 309
Query: 152 YLDEADRDKERYMKELEQYQKTEAYKVFS 180
Y + + K+ Y+K+L Y+ + K +S
Sbjct: 310 YKKKTEAAKKEYLKQLAAYRASLVSKSYS 338
>gi|149408144 TOX high mobility group box family member 2 isoform a
[Homo sapiens]
Length = 506
Score = 62.8 bits (151), Expect = 4e-10
Identities = 34/133 (25%), Positives = 65/133 (48%), Gaps = 8/133 (6%)
Query: 63 SESSNAAEGNEQRHEDEQRSKRGGWSKGRKRKKPLR----DSNAPKSPLTGYVRFMNERR 118
S SS+ E + H KR G+K K P + D N P+ P++ Y F + +
Sbjct: 202 SPSSSTQEEESEVHFKISGEKRPSADPGKKAKNPKKKKKKDPNEPQKPVSAYALFFRDTQ 261
Query: 119 EQLRAKRPEVPFPEITRMLGNEWSKLPPEEKQRYLDEADRDKERYMKELEQYQKTEAYKV 178
++ + P F ++++++ + W L E+KQ Y + + K+ Y+K L Y+ + +
Sbjct: 262 AAIKGQNPSATFGDVSKIVASMWDSLGEEQKQAYKRKTEAAKKEYLKALAAYRAS----L 317
Query: 179 FSRKTQDRQKGKS 191
S+ + D+ + KS
Sbjct: 318 VSKSSPDQGETKS 330
>gi|149408141 TOX high mobility group box family member 2 isoform c
[Homo sapiens]
Length = 464
Score = 62.8 bits (151), Expect = 4e-10
Identities = 34/133 (25%), Positives = 65/133 (48%), Gaps = 8/133 (6%)
Query: 63 SESSNAAEGNEQRHEDEQRSKRGGWSKGRKRKKPLR----DSNAPKSPLTGYVRFMNERR 118
S SS+ E + H KR G+K K P + D N P+ P++ Y F + +
Sbjct: 160 SPSSSTQEEESEVHFKISGEKRPSADPGKKAKNPKKKKKKDPNEPQKPVSAYALFFRDTQ 219
Query: 119 EQLRAKRPEVPFPEITRMLGNEWSKLPPEEKQRYLDEADRDKERYMKELEQYQKTEAYKV 178
++ + P F ++++++ + W L E+KQ Y + + K+ Y+K L Y+ + +
Sbjct: 220 AAIKGQNPSATFGDVSKIVASMWDSLGEEQKQAYKRKTEAAKKEYLKALAAYRAS----L 275
Query: 179 FSRKTQDRQKGKS 191
S+ + D+ + KS
Sbjct: 276 VSKSSPDQGETKS 288
>gi|14249636 TOX high mobility group box family member 2 isoform c
[Homo sapiens]
Length = 464
Score = 62.8 bits (151), Expect = 4e-10
Identities = 34/133 (25%), Positives = 65/133 (48%), Gaps = 8/133 (6%)
Query: 63 SESSNAAEGNEQRHEDEQRSKRGGWSKGRKRKKPLR----DSNAPKSPLTGYVRFMNERR 118
S SS+ E + H KR G+K K P + D N P+ P++ Y F + +
Sbjct: 160 SPSSSTQEEESEVHFKISGEKRPSADPGKKAKNPKKKKKKDPNEPQKPVSAYALFFRDTQ 219
Query: 119 EQLRAKRPEVPFPEITRMLGNEWSKLPPEEKQRYLDEADRDKERYMKELEQYQKTEAYKV 178
++ + P F ++++++ + W L E+KQ Y + + K+ Y+K L Y+ + +
Sbjct: 220 AAIKGQNPSATFGDVSKIVASMWDSLGEEQKQAYKRKTEAAKKEYLKALAAYRAS----L 275
Query: 179 FSRKTQDRQKGKS 191
S+ + D+ + KS
Sbjct: 276 VSKSSPDQGETKS 288
>gi|115529449 upstream binding transcription factor, RNA polymerase
I isoform b [Homo sapiens]
Length = 727
Score = 62.8 bits (151), Expect = 4e-10
Identities = 34/125 (27%), Positives = 67/125 (53%), Gaps = 7/125 (5%)
Query: 89 KGRKRKKPLRDSNAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEE 148
KG+K KK + PK PLT Y RF E+R + PE+ ++T++L ++ +LP ++
Sbjct: 101 KGKKLKK---HPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKK 157
Query: 149 KQRYLDEADRDKERYMKELEQYQKTEAYKVFSRKTQDRQKGKSHRQDAARQATHDHEKET 208
K +Y+ + R+K+ + + L ++++ + + K D + + +Q + HEK+
Sbjct: 158 KMKYIQDFQREKQEFERNLARFREDHPDLIQNAKKSDIPE----KPKTPQQLWYTHEKKV 213
Query: 209 EVKER 213
+K R
Sbjct: 214 YLKVR 218
Score = 47.0 bits (110), Expect = 3e-05
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 94 KKPLRD-----SNAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEE 148
KKP ++ S PK P++ F E+R QL+ +RPE+ E+TR+L W+ L ++
Sbjct: 356 KKPAQEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWNDLSEKK 415
Query: 149 KQRY 152
K +Y
Sbjct: 416 KAKY 419
Score = 41.2 bits (95), Expect = 0.001
Identities = 33/154 (21%), Positives = 65/154 (42%), Gaps = 12/154 (7%)
Query: 69 AEGNEQRHEDEQRSKRGGWSKGRKRKKPLRDSNAPKSPLTGYVRFMNERREQLRAKRPEV 128
A +++R+E E R + KK K P+ GY +F E + +
Sbjct: 497 AAEDQKRYERELSEMRAPPAATNSSKKMKFQGEPKKPPMNGYQKFSQELLS--NGELNHL 554
Query: 129 PFPEITRMLGNEWSKLPPEEKQRYLDEADRDKERYMKELEQYQKT------EAYKVF--- 179
P E +G+ W ++ +K+ Y A+ +++Y L+ + K+ AYK +
Sbjct: 555 PLKERMVEIGSRWQRISQSQKEHYKKLAEEQQKQYKVHLDLWVKSLSPQDRAAYKEYISN 614
Query: 180 SRKTQDRQKGKSHRQD-AARQATHDHEKETEVKE 212
RK+ + +G + + Q+ + E++ E E
Sbjct: 615 KRKSMTKLRGPNPKSSRTTLQSKSESEEDDEEDE 648
Score = 39.7 bits (91), Expect = 0.004
Identities = 48/208 (23%), Positives = 82/208 (39%), Gaps = 27/208 (12%)
Query: 74 QRHEDEQRSKRG----GWSKGRKRKKPLRDSNAPKSPLTGYVRFMNERREQLRAKRPEVP 129
Q+H + S+ G +K ++ K D K P Y + E L A +VP
Sbjct: 228 QKHPELNISEEGITKSTLTKAERQLKDKFDGRPTKPPPNSYSLYCAE----LMANMKDVP 283
Query: 130 FPEITRMLGNEWSKLPPEEKQRYLDEADRDKERY----MKELEQYQKTEAYKVFSRKTQD 185
E + +W L +EK Y + D+ K+ Y ++ LE + E +V +
Sbjct: 284 STERMVLCSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRFLESLPEEEQQRVLGEEKML 343
Query: 186 RQKGKSHRQDAARQATHDHEK-ETEVKERSVFDIPIFTEEFL-----NHSKAREAELRQL 239
K A+++ + K +E +R V + IF+EE + E+EL +L
Sbjct: 344 NINKKQATSPASKKPAQEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRL 403
Query: 240 ---------RKSNMEFEERNAALQKHVE 258
K +++ R AAL+ E
Sbjct: 404 LARMWNDLSEKKKAKYKAREAALKAQSE 431
Score = 35.8 bits (81), Expect = 0.058
Identities = 32/130 (24%), Positives = 61/130 (46%), Gaps = 17/130 (13%)
Query: 54 DLSQGQLLQSESSNAA-EGNEQRHEDEQRSKRGGWSKGRKRKKPLRDSNAPKSPLTGYVR 112
DLS+ + + ++ AA + +R +R +RG + KR + + + L R
Sbjct: 410 DLSEKKKAKYKAREAALKAQSERKPGGEREERGKLPESPKRAEEIWQQSVIGDYLA---R 466
Query: 113 FMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKQRYLDEADRDKERYMKELEQYQK 172
F N+R + L+A E+T W+ + +EK ++ +A D++RY +EL + +
Sbjct: 467 FKNDRVKALKAM-------EMT------WNNMEKKEKLMWIKKAAEDQKRYERELSEMRA 513
Query: 173 TEAYKVFSRK 182
A S+K
Sbjct: 514 PPAATNSSKK 523
>gi|115529451 upstream binding transcription factor, RNA polymerase
I isoform b [Homo sapiens]
Length = 727
Score = 62.8 bits (151), Expect = 4e-10
Identities = 34/125 (27%), Positives = 67/125 (53%), Gaps = 7/125 (5%)
Query: 89 KGRKRKKPLRDSNAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEE 148
KG+K KK + PK PLT Y RF E+R + PE+ ++T++L ++ +LP ++
Sbjct: 101 KGKKLKK---HPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKK 157
Query: 149 KQRYLDEADRDKERYMKELEQYQKTEAYKVFSRKTQDRQKGKSHRQDAARQATHDHEKET 208
K +Y+ + R+K+ + + L ++++ + + K D + + +Q + HEK+
Sbjct: 158 KMKYIQDFQREKQEFERNLARFREDHPDLIQNAKKSDIPE----KPKTPQQLWYTHEKKV 213
Query: 209 EVKER 213
+K R
Sbjct: 214 YLKVR 218
Score = 47.0 bits (110), Expect = 3e-05
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 94 KKPLRD-----SNAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEE 148
KKP ++ S PK P++ F E+R QL+ +RPE+ E+TR+L W+ L ++
Sbjct: 356 KKPAQEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWNDLSEKK 415
Query: 149 KQRY 152
K +Y
Sbjct: 416 KAKY 419
Score = 41.2 bits (95), Expect = 0.001
Identities = 33/154 (21%), Positives = 65/154 (42%), Gaps = 12/154 (7%)
Query: 69 AEGNEQRHEDEQRSKRGGWSKGRKRKKPLRDSNAPKSPLTGYVRFMNERREQLRAKRPEV 128
A +++R+E E R + KK K P+ GY +F E + +
Sbjct: 497 AAEDQKRYERELSEMRAPPAATNSSKKMKFQGEPKKPPMNGYQKFSQELLS--NGELNHL 554
Query: 129 PFPEITRMLGNEWSKLPPEEKQRYLDEADRDKERYMKELEQYQKT------EAYKVF--- 179
P E +G+ W ++ +K+ Y A+ +++Y L+ + K+ AYK +
Sbjct: 555 PLKERMVEIGSRWQRISQSQKEHYKKLAEEQQKQYKVHLDLWVKSLSPQDRAAYKEYISN 614
Query: 180 SRKTQDRQKGKSHRQD-AARQATHDHEKETEVKE 212
RK+ + +G + + Q+ + E++ E E
Sbjct: 615 KRKSMTKLRGPNPKSSRTTLQSKSESEEDDEEDE 648
Score = 39.7 bits (91), Expect = 0.004
Identities = 48/208 (23%), Positives = 82/208 (39%), Gaps = 27/208 (12%)
Query: 74 QRHEDEQRSKRG----GWSKGRKRKKPLRDSNAPKSPLTGYVRFMNERREQLRAKRPEVP 129
Q+H + S+ G +K ++ K D K P Y + E L A +VP
Sbjct: 228 QKHPELNISEEGITKSTLTKAERQLKDKFDGRPTKPPPNSYSLYCAE----LMANMKDVP 283
Query: 130 FPEITRMLGNEWSKLPPEEKQRYLDEADRDKERY----MKELEQYQKTEAYKVFSRKTQD 185
E + +W L +EK Y + D+ K+ Y ++ LE + E +V +
Sbjct: 284 STERMVLCSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRFLESLPEEEQQRVLGEEKML 343
Query: 186 RQKGKSHRQDAARQATHDHEK-ETEVKERSVFDIPIFTEEFL-----NHSKAREAELRQL 239
K A+++ + K +E +R V + IF+EE + E+EL +L
Sbjct: 344 NINKKQATSPASKKPAQEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRL 403
Query: 240 ---------RKSNMEFEERNAALQKHVE 258
K +++ R AAL+ E
Sbjct: 404 LARMWNDLSEKKKAKYKAREAALKAQSE 431
Score = 35.8 bits (81), Expect = 0.058
Identities = 32/130 (24%), Positives = 61/130 (46%), Gaps = 17/130 (13%)
Query: 54 DLSQGQLLQSESSNAA-EGNEQRHEDEQRSKRGGWSKGRKRKKPLRDSNAPKSPLTGYVR 112
DLS+ + + ++ AA + +R +R +RG + KR + + + L R
Sbjct: 410 DLSEKKKAKYKAREAALKAQSERKPGGEREERGKLPESPKRAEEIWQQSVIGDYLA---R 466
Query: 113 FMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKQRYLDEADRDKERYMKELEQYQK 172
F N+R + L+A E+T W+ + +EK ++ +A D++RY +EL + +
Sbjct: 467 FKNDRVKALKAM-------EMT------WNNMEKKEKLMWIKKAAEDQKRYERELSEMRA 513
Query: 173 TEAYKVFSRK 182
A S+K
Sbjct: 514 PPAATNSSKK 523
>gi|169202818 PREDICTED: similar to hCG1991922 [Homo sapiens]
Length = 488
Score = 62.4 bits (150), Expect = 6e-10
Identities = 30/124 (24%), Positives = 63/124 (50%), Gaps = 1/124 (0%)
Query: 89 KGRKRKKPLRDSNAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEE 148
KG +KK +D NAPK P + + + +E +++ +RP + F ++ + LG W+ ++
Sbjct: 218 KGETKKK-FKDPNAPKRPPSAFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADD 276
Query: 149 KQRYLDEADRDKERYMKELEQYQKTEAYKVFSRKTQDRQKGKSHRQDAARQATHDHEKET 208
KQ Y + + KE+Y K++ Y+ + + K K +++ + + E+E
Sbjct: 277 KQPYEKRSAKLKEKYEKDIAAYRAKGKHDAANNGVVKAAKSKKKKEEEENEEDEEDEEEE 336
Query: 209 EVKE 212
+ +E
Sbjct: 337 KDEE 340
>gi|239749996 PREDICTED: similar to hCG1991922 [Homo sapiens]
Length = 487
Score = 62.4 bits (150), Expect = 6e-10
Identities = 30/124 (24%), Positives = 63/124 (50%), Gaps = 1/124 (0%)
Query: 89 KGRKRKKPLRDSNAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEE 148
KG +KK +D NAPK P + + + +E +++ +RP + F ++ + LG W+ ++
Sbjct: 218 KGETKKK-FKDPNAPKRPPSAFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADD 276
Query: 149 KQRYLDEADRDKERYMKELEQYQKTEAYKVFSRKTQDRQKGKSHRQDAARQATHDHEKET 208
KQ Y + + KE+Y K++ Y+ + + K K +++ + + E+E
Sbjct: 277 KQPYEKRSAKLKEKYEKDIAAYRAKGKHDAANNGVVKAAKSKKKKEEEENEEDEEDEEEE 336
Query: 209 EVKE 212
+ +E
Sbjct: 337 KDEE 340
>gi|239742753 PREDICTED: similar to high mobility group box 3
isoform 2 [Homo sapiens]
Length = 183
Score = 62.4 bits (150), Expect = 6e-10
Identities = 39/131 (29%), Positives = 67/131 (51%), Gaps = 6/131 (4%)
Query: 39 SSGATSSTNNPEFVEDLSQGQLLQSESSNAAEGNEQRHEDEQRSKRG--GWSKGRKRKKP 96
S GA +PEF + S+ S ++ +E D+ R G +KG K+KK
Sbjct: 8 SQGALLGDKSPEFSKKCSERWKTMS-GKEKSKFDEMAKTDKVHCDREMKGPAKGGKKKK- 65
Query: 97 LRDSNAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKQRYLDEA 156
D +APK P +G+ F +E R ++++ P + ++ + LG W+ L EKQ Y+ +
Sbjct: 66 --DPSAPKRPPSGFFLFSSEIRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEKQPYITKT 123
Query: 157 DRDKERYMKEL 167
+ KE+Y K++
Sbjct: 124 AKLKEKYEKDV 134
>gi|21264355 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin e1 [Homo sapiens]
Length = 411
Score = 62.4 bits (150), Expect = 6e-10
Identities = 49/211 (23%), Positives = 93/211 (44%), Gaps = 31/211 (14%)
Query: 103 PKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKQRYLDEADRDKER 162
P PL Y+R+ + +Q++A P++ EI +++G W L EEKQ YL+E + +K
Sbjct: 66 PDKPLMPYMRYSRKVWDQVKASNPDLKLWEIGKIIGGMWRDLTDEEKQEYLNEYEAEKIE 125
Query: 163 YMKELEQYQKTEAYKVF--------------SRKTQDR-QKGKSHRQDAARQATHDHEKE 207
Y + ++ Y + AY + SR+ Q R +KG+ + + D++
Sbjct: 126 YNESMKAYHNSPAYLAYINAKSRAEAALEEESRQRQSRMEKGEPYMSIQPAEDPDDYDDG 185
Query: 208 TEVKERSVFDIP---IFTEEFLNHSKAREAELRQLRKSNMEFEERNAALQKHVESMRTAV 264
+K + E L+ S + ++ R L++ V+S+
Sbjct: 186 FSMKHTATARFQRNHRLISEILSESVVPDVR-------SVVTTARMQVLKRQVQSLMVHQ 238
Query: 265 EKLEVDVIQERSRNTVLQQHLETLRQVLTSS 295
KLE +++Q + ++H E R+ L S+
Sbjct: 239 RKLEAELLQ------IEERHQEKKRKFLEST 263
>gi|226246533 TOX high mobility group box family member 3 isoform 2
[Homo sapiens]
Length = 571
Score = 62.0 bits (149), Expect = 8e-10
Identities = 45/193 (23%), Positives = 82/193 (42%), Gaps = 25/193 (12%)
Query: 1 MENLMTSSTLPPLFADEDGSKESNDLATTGLN---------HPEVPYSSGATSSTNNPEF 51
M + S +PP A +S A GLN P P S AT S ++
Sbjct: 155 MTDAARSGVMPP--AQLTTINQSQLSAQLGLNLGGASMPHTSPSPPASKSATPSPSSSIN 212
Query: 52 VEDLSQGQLLQSESSNAAEGNEQRHEDEQRSKRGGWSKGRKRKKPLRDSNAPKSPLTGYV 111
ED ++ +N A G ++ D + + +KK +D N P+ P++ Y
Sbjct: 213 EED--------ADEANRAIGEKRAAPDSGKKPK------TPKKKKKKDPNEPQKPVSAYA 258
Query: 112 RFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKQRYLDEADRDKERYMKELEQYQ 171
F + + ++ + P F E+++++ + W L E+KQ Y + + K+ Y+K L Y+
Sbjct: 259 LFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTEAAKKEYLKALAAYR 318
Query: 172 KTEAYKVFSRKTQ 184
+ K + +
Sbjct: 319 ASLVSKAAAESAE 331
>gi|226054295 TOX high mobility group box family member 3 isoform 1
[Homo sapiens]
Length = 576
Score = 62.0 bits (149), Expect = 8e-10
Identities = 45/193 (23%), Positives = 82/193 (42%), Gaps = 25/193 (12%)
Query: 1 MENLMTSSTLPPLFADEDGSKESNDLATTGLN---------HPEVPYSSGATSSTNNPEF 51
M + S +PP A +S A GLN P P S AT S ++
Sbjct: 160 MTDAARSGVMPP--AQLTTINQSQLSAQLGLNLGGASMPHTSPSPPASKSATPSPSSSIN 217
Query: 52 VEDLSQGQLLQSESSNAAEGNEQRHEDEQRSKRGGWSKGRKRKKPLRDSNAPKSPLTGYV 111
ED ++ +N A G ++ D + + +KK +D N P+ P++ Y
Sbjct: 218 EED--------ADEANRAIGEKRAAPDSGKKPK------TPKKKKKKDPNEPQKPVSAYA 263
Query: 112 RFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKQRYLDEADRDKERYMKELEQYQ 171
F + + ++ + P F E+++++ + W L E+KQ Y + + K+ Y+K L Y+
Sbjct: 264 LFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTEAAKKEYLKALAAYR 323
Query: 172 KTEAYKVFSRKTQ 184
+ K + +
Sbjct: 324 ASLVSKAAAESAE 336
>gi|169212060 PREDICTED: high mobility group protein B3-like
protein-like [Homo sapiens]
Length = 207
Score = 62.0 bits (149), Expect = 8e-10
Identities = 32/93 (34%), Positives = 52/93 (55%), Gaps = 4/93 (4%)
Query: 79 EQRSKRGGWSKGRKRKKPLRDSNAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLG 138
+Q K G +KG K+K P NAPK P +G+ F +E + ++ P +P ++ + LG
Sbjct: 72 DQEIKDYGPAKGGKKKDP----NAPKRPPSGFFLFCSEFCPKSKSTNPGIPIGDVAKKLG 127
Query: 139 NEWSKLPPEEKQRYLDEADRDKERYMKELEQYQ 171
W L EKQ Y+ +A + KE+Y K++ Y+
Sbjct: 128 EMWKNLNDSEKQPYITQAAKLKEKYEKDVAVYK 160
Score = 47.0 bits (110), Expect = 3e-05
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 99 DSNAPKSPLTGYVRFMNERREQLRAKRPEVP--FPEITRMLGNEWSKLPPEEKQRYLDEA 156
D PK ++ Y F+ RE+ + K P+VP F E ++ W + +EK ++ + A
Sbjct: 5 DPKKPKGKMSAYAFFVQTCREEHKKKNPKVPINFAEFSKKCSERWKTMSKKEKSKFNELA 64
Query: 157 DRDKERYMKELEQY 170
DK Y +E++ Y
Sbjct: 65 KADKVHYDQEIKDY 78
>gi|239745831 PREDICTED: high mobility group protein B3-like
protein-like [Homo sapiens]
Length = 207
Score = 62.0 bits (149), Expect = 8e-10
Identities = 32/93 (34%), Positives = 52/93 (55%), Gaps = 4/93 (4%)
Query: 79 EQRSKRGGWSKGRKRKKPLRDSNAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLG 138
+Q K G +KG K+K P NAPK P +G+ F +E + ++ P +P ++ + LG
Sbjct: 72 DQEIKDYGPAKGGKKKDP----NAPKRPPSGFFLFCSEFCPKSKSTNPGIPIGDVAKKLG 127
Query: 139 NEWSKLPPEEKQRYLDEADRDKERYMKELEQYQ 171
W L EKQ Y+ +A + KE+Y K++ Y+
Sbjct: 128 EMWKNLNDSEKQPYITQAAKLKEKYEKDVAVYK 160
Score = 47.0 bits (110), Expect = 3e-05
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 99 DSNAPKSPLTGYVRFMNERREQLRAKRPEVP--FPEITRMLGNEWSKLPPEEKQRYLDEA 156
D PK ++ Y F+ RE+ + K P+VP F E ++ W + +EK ++ + A
Sbjct: 5 DPKKPKGKMSAYAFFVQTCREEHKKKNPKVPINFAEFSKKCSERWKTMSKKEKSKFNELA 64
Query: 157 DRDKERYMKELEQY 170
DK Y +E++ Y
Sbjct: 65 KADKVHYDQEIKDY 78
>gi|239744307 PREDICTED: similar to hCG1991922 [Homo sapiens]
Length = 486
Score = 61.6 bits (148), Expect = 1e-09
Identities = 32/124 (25%), Positives = 62/124 (50%), Gaps = 3/124 (2%)
Query: 89 KGRKRKKPLRDSNAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEE 148
KG +KK +D NAPK P + + + +E +++ +RP + F ++ + LG W+ ++
Sbjct: 218 KGETKKK-FKDPNAPKRPPSAFFLYFSEYGPKIKGERPGLSFGDVAKKLGEMWNNTAADD 276
Query: 149 KQRYLDEADRDKERYMKELEQYQKTEAYKVFSRKTQDRQKGKSHRQDAARQATHDHEKET 208
KQ Y + + KE+Y K++ Y+ + + K K +++ + D E E
Sbjct: 277 KQPYEKRSAKLKEKYEKDIAAYRAKGKHDAANNGVVKAAKSKKKKEEEENE--EDEEDEE 334
Query: 209 EVKE 212
E K+
Sbjct: 335 EEKD 338
>gi|56806673 high-mobility group box 1-like 1 [Homo sapiens]
Length = 211
Score = 61.6 bits (148), Expect = 1e-09
Identities = 38/127 (29%), Positives = 64/127 (50%), Gaps = 6/127 (4%)
Query: 89 KGRKRKKPLRDSNAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEE 148
KG +KK +D NAPK P + + F +E +++ + P + ++ + LG W+ ++
Sbjct: 82 KGETKKK-FKDPNAPKRPPSAFFLFCSEYHPKIKGEHPGLSIGDVAKKLGEMWNNTAADD 140
Query: 149 KQRYLDEADRDKERYMKELEQYQ---KTEAYKVFSRKTQDRQKGKSHRQDAARQATHDHE 205
KQ +A + KE+Y K++ YQ K EA K K + +K K +D + D E
Sbjct: 141 KQPGEKKAAKLKEKYEKDIAAYQAKGKPEAAKKGVVKAEKSKKKKEEEED--EEDEEDEE 198
Query: 206 KETEVKE 212
+E E E
Sbjct: 199 EEDEEDE 205
Score = 40.0 bits (92), Expect = 0.003
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 99 DSNAPKSPLTGYVRFMNERREQLRAKRPE--VPFPEITRMLGNEWSKLPPEEKQRYLDEA 156
D P+ ++ Y F+ RE+ + K + V F E + W + +EK ++ D A
Sbjct: 5 DPKKPRGKMSSYAFFVQTCREEHKKKHSDASVNFSEFSNKCSERWKTMSAKEKGKFEDMA 64
Query: 157 DRDKERYMKELEQY--QKTEAYKVF 179
DK Y ++++ Y K E K F
Sbjct: 65 KADKTHYERQMKTYIPPKGETKKKF 89
>gi|19923236 nuclear antigen Sp100 isoform 2 [Homo sapiens]
Length = 879
Score = 60.8 bits (146), Expect = 2e-09
Identities = 33/124 (26%), Positives = 63/124 (50%), Gaps = 4/124 (3%)
Query: 89 KGRKRKKPLRDSNAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEE 148
KG K+KK +D NAPK P + F +E R +++ + P + ++ + L W+ +
Sbjct: 756 KGEKKKK-FKDPNAPKRPPLAFFLFCSEYRPKIKGEHPGLSIDDVVKKLAGMWNNTAAAD 814
Query: 149 KQRYLDEADRDKERYMKELEQYQ---KTEAYKVFSRKTQDRQKGKSHRQDAARQATHDHE 205
KQ Y +A + KE+Y K++ Y+ K + K K + +K K +D + ++E
Sbjct: 815 KQFYEKKAAKLKEKYKKDIAAYRAKGKPNSAKKRVVKAEKSKKKKEEEEDEEDEQEEENE 874
Query: 206 KETE 209
++ +
Sbjct: 875 EDDD 878
>gi|169217198 PREDICTED: similar to hCG1644442 [Homo sapiens]
Length = 201
Score = 59.7 bits (143), Expect = 4e-09
Identities = 45/175 (25%), Positives = 74/175 (42%), Gaps = 17/175 (9%)
Query: 48 NPEFVEDLSQGQLLQSESSNAAEGNEQRHEDE----------QRSKRGGWSKGRKRKKPL 97
NPE + + SE G E+ DE Q K G +G K+K P
Sbjct: 31 NPEVPVNFVEFSKKCSEKRKTMSGKEKTKFDEMAKVDKVHYDQEMKDNGPVEGGKKKDP- 89
Query: 98 RDSNAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKQRYLDEAD 157
NA K PL+G+ F +E ++++ P + ++ + LG W EKQ Y+ +A
Sbjct: 90 ---NALKRPLSGFFLFCSEFHPKIKSTNPGISIGDMAKKLGEMWINYSDREKQPYITKAA 146
Query: 158 RDKERYMKELEQYQKTEAYKVFSRKTQDRQKGKSHRQDAARQATHDHEKETEVKE 212
KE+Y K++ Y+ + T+ K + ++ + E+E E KE
Sbjct: 147 DLKEKYEKDVADYKSKGKFDSAKGPTKIAWKKVKEKD---KEDEEEEEEEEEKKE 198
Score = 38.9 bits (89), Expect = 0.007
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 99 DSNAPKSPLTGYVRFMNERREQLRAKRPEVP--FPEITRMLGNEWSKLPPEEKQRYLDEA 156
D PK ++ Y F RE+ + K PEVP F E ++ + + +EK ++ + A
Sbjct: 5 DHKKPKGKMSAYAFFAQTCREEHKKKNPEVPVNFVEFSKKCSEKRKTMSGKEKTKFDEMA 64
Query: 157 DRDKERYMKELEQYQKTEAYK 177
DK Y +E++ E K
Sbjct: 65 KVDKVHYDQEMKDNGPVEGGK 85
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.310 0.126 0.345
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,937,819
Number of Sequences: 37866
Number of extensions: 596305
Number of successful extensions: 4618
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 244
Number of HSP's successfully gapped in prelim test: 443
Number of HSP's that attempted gapping in prelim test: 3266
Number of HSP's gapped (non-prelim): 1467
length of query: 347
length of database: 18,247,518
effective HSP length: 103
effective length of query: 244
effective length of database: 14,347,320
effective search space: 3500746080
effective search space used: 3500746080
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.