HMGB1 28838

Name: HMGB1	Sequence: fasta or formatted (215aa)		NCBI GI: 4504425
Description: high-mobility group box 1		Referenced in: Nonhistone Chromosomal Proteins
Composition: Amino acid Percentage Count Longest homopolymer A alanine 8.8 19 2 C cysteine 1.4 3 1 D aspartate 9.3 20 4 E glutamate 16.7 36 5 F phenylalanine 4.2 9 2 G glycine 5.1 11 1 H histidine 1.4 3 1 I isoleucine 1.9 4 1 K lysine 20.0 43 4 L leucine 1.9 4 1 M methionine 2.8 6 1 N asparagine 1.9 4 2 P proline 6.0 13 2 Q glutamine 0.9 2 1 R arginine 3.7 8 1 S serine 5.1 11 2 T threonine 2.3 5 1 V valine 2.3 5 2 W tryptophan 0.9 2 1 Y tyrosine 3.3 7 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 high-mobility group box 1 HMGB1L1 0.917 high-mobility group box 1-like 1 HMGB2 0.799 high-mobility group box 2 HMGB2 0.799 high-mobility group box 2 HMGB2 0.799 high-mobility group box 2 LOC645490 0.720 PREDICTED: similar to hCG1991922 LOC645490 0.720 PREDICTED: similar to hCG1991922 LOC645490 0.704 PREDICTED: similar to hCG1991922 SP100 0.701 nuclear antigen Sp100 isoform 2 HMGB3 0.678 high-mobility group box 3 LOC646993 0.611 PREDICTED: similar to high mobility group box 3 [Ho... LOC646993 0.611 PREDICTED: similar to high mobility group box 3 [Ho... LOC646993 0.611 PREDICTED: similar to high mobility group box 3 [Ho... LOC441795 0.576 PREDICTED: high mobility group protein B3-like prot... LOC441795 0.576 PREDICTED: high mobility group protein B3-like prot... LOC203510 0.555 PREDICTED: similar to hCG1644442 LOC203510 0.555 PREDICTED: similar to hCG1644442 LOC203510 0.555 PREDICTED: hypothetical protein LOC203510 LOC729595 0.536 PREDICTED: similar to high mobility group box 3 [Ho... LOC729595 0.536 PREDICTED: similar to high mobility group box 3 [Ho... LOC729595 0.536 PREDICTED: similar to high mobility group box 3 iso... LOC644129 0.405 PREDICTED: similar to hCG1647425 LOC644129 0.405 PREDICTED: similar to hCG1647425 LOC729595 0.400 PREDICTED: similar to high mobility group box 3 iso... LOC644129 0.339 PREDICTED: similar to hCG1647425 HMGB4 0.299 HMG2 like isoform 1 SSRP1 0.161 structure specific recognition protein 1 UBTF 0.133 upstream binding transcription factor, RNA polymera... UBTF 0.133 upstream binding transcription factor, RNA polymera... UBTF 0.133 upstream binding transcription factor, RNA polymerase... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.