Name: HMGB1L1 | Sequence: fasta or formatted (211aa) | NCBI GI: 56806673 | |
Description: high-mobility group box 1-like 1
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Referenced in: Nonhistone Chromosomal Proteins
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Composition:
Amino acid Percentage Count Longest homopolymer A alanine 8.5 18 2 C cysteine 1.4 3 1 D aspartate 8.5 18 4 E glutamate 15.6 33 4 F phenylalanine 4.3 9 2 G glycine 5.7 12 1 H histidine 2.4 5 1 I isoleucine 1.9 4 1 K lysine 19.9 42 4 L leucine 1.9 4 1 M methionine 2.8 6 1 N asparagine 2.4 5 2 P proline 5.7 12 2 Q glutamine 1.9 4 1 R arginine 2.4 5 1 S serine 5.7 12 2 T threonine 2.8 6 1 V valine 2.4 5 2 W tryptophan 0.9 2 1 Y tyrosine 2.8 6 1 |
Comparative genomics:
Search single species RefSeq proteins at NCBI
Search summary
Figure data | ||
Related human proteins:Protein Relative score Description Self-match 1.000 high-mobility group box 1-like 1 HMGB1 0.933 high-mobility group box 1 HMGB2 0.761 high-mobility group box 2 HMGB2 0.761 high-mobility group box 2 HMGB2 0.761 high-mobility group box 2 LOC645490 0.687 PREDICTED: similar to hCG1991922 LOC645490 0.684 PREDICTED: similar to hCG1991922 LOC645490 0.684 PREDICTED: similar to hCG1991922 SP100 0.682 nuclear antigen Sp100 isoform 2 HMGB3 0.648 high-mobility group box 3 LOC646993 0.586 PREDICTED: similar to high mobility group box 3 [Ho... LOC646993 0.586 PREDICTED: similar to high mobility group box 3 [Ho... LOC646993 0.586 PREDICTED: similar to high mobility group box 3 [Ho... LOC441795 0.564 PREDICTED: high mobility group protein B3-like prot... LOC441795 0.564 PREDICTED: high mobility group protein B3-like prot... LOC203510 0.552 PREDICTED: similar to hCG1644442 LOC203510 0.552 PREDICTED: similar to hCG1644442 LOC203510 0.552 PREDICTED: hypothetical protein LOC203510 LOC729595 0.520 PREDICTED: similar to high mobility group box 3 [Ho... LOC729595 0.520 PREDICTED: similar to high mobility group box 3 [Ho... LOC729595 0.520 PREDICTED: similar to high mobility group box 3 iso... LOC644129 0.400 PREDICTED: similar to hCG1647425 LOC644129 0.400 PREDICTED: similar to hCG1647425 LOC729595 0.388 PREDICTED: similar to high mobility group box 3 iso... LOC644129 0.330 PREDICTED: similar to hCG1647425 HMGB4 0.275 HMG2 like isoform 1 SSRP1 0.157 structure specific recognition protein 1 TOX 0.118 thymus high mobility group box protein TOX TOX3 0.118 TOX high mobility group box family member 3 isoform... TOX3 0.118 TOX high mobility group box family member 3 isoform...Human BLASTP results (used to prepare the table) |
Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.
See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.