Guide to the Human Genome
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Name: SLC25A18 Sequence: fasta or formatted (315aa) NCBI GI: 13899342
Description:

solute carrier

Referenced in:

Glutamate
Mitochondria
Solute Carrier Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.4         36           2
 C cysteine            2.9          9           1
 D aspartate           3.5         11           1
 E glutamate           3.2         10           1
 F phenylalanine       4.8         15           2
 G glycine            10.8         34           2
 H histidine           1.9          6           2
 I isoleucine          6.0         19           2
 K lysine              5.1         16           2
 L leucine            11.4         36           2
 M methionine          4.4         14           1
 N asparagine          2.9          9           2
 P proline             3.2         10           1
 Q glutamine           3.8         12           1
 R arginine            5.4         17           2
 S serine              5.1         16           1
 T threonine           6.0         19           2
 V valine              5.4         17           3
 W tryptophan          0.6          2           1
 Y tyrosine            2.2          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier 
SLC25A22              0.625   mitochondrial glutamate carrier 1 
SLC25A13              0.299   solute carrier family 25, member 13 isoform 2 
SLC25A13              0.299   solute carrier family 25, member 13 isoform 1 [Homo...
SLC25A12              0.294   solute carrier family 25, member 12 
SLC25A1               0.144   solute carrier family 25 (mitochondrial carrier; cit...
SLC25A21              0.136   solute carrier family 25 (mitochondrial oxodicarboxy...
SLC25A31              0.128   solute carrier family 25 (mitochondrial carrier; ade...
SLC25A44              0.124   solute carrier family 25, member 44 isoform 1 
SLC25A45              0.121   solute carrier family 25, member 45 isoform a [Homo...
SLC25A4               0.119   solute carrier family 25 (mitochondrial carrier; ade...
SLC25A29              0.119   solute carrier family 25, member 29 
SLC25A6               0.118   solute carrier family 25, member A6 
SLC25A14              0.116   solute carrier family 25, member 14 isoform UCP5L [Ho...
SLC25A14              0.116   solute carrier family 25, member 14 isoform UCP5S [H...
C14orf68              0.111   chromosome 14 open reading frame 68 
SLC25A26              0.109   solute carrier family 25, member 26 
SLC25A5               0.109   solute carrier family 25, member 5 
SLC25A20              0.106   carnitine/acylcarnitine translocase 
SLC25A34              0.104   solute carrier family 25, member 34 
UCP3                  0.103   uncoupling protein 3 isoform UCP3S 
UCP3                  0.103   uncoupling protein 3 isoform UCP3L 
SLC25A28              0.101   solute carrier family 25, member 28 
SLC25A30              0.101   solute carrier family 25, member 30 
SLC25A43              0.101   mitochondrial solute carrier protein 
SLC25A37              0.101   solute carrier family 25, member 37 
SLC25A16              0.100   solute carrier family 25, member 16 
UCP2                  0.095   uncoupling protein 2 
UCP1                  0.095   uncoupling protein 1 
LOC100292202          0.090   PREDICTED: similar to solute carrier family 25, mem...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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