Guide to the Human Genome
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Name: SLC25A20 Sequence: fasta or formatted (301aa) NCBI GI: 4557403
Description:

carnitine/acylcarnitine translocase

Referenced in:

Mitochondria
Solute Carrier Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.6         23           2
 C cysteine            2.0          6           1
 D aspartate           3.0          9           1
 E glutamate           3.7         11           1
 F phenylalanine       7.3         22           2
 G glycine            11.0         33           2
 H histidine           0.7          2           1
 I isoleucine          5.3         16           2
 K lysine              6.0         18           2
 L leucine            10.0         30           2
 M methionine          3.7         11           1
 N asparagine          2.7          8           1
 P proline             8.0         24           2
 Q glutamine           3.7         11           2
 R arginine            4.7         14           1
 S serine              4.3         13           2
 T threonine           6.0         18           2
 V valine              6.3         19           1
 W tryptophan          1.0          3           1
 Y tyrosine            3.3         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   carnitine/acylcarnitine translocase 
SLC25A29              0.245   solute carrier family 25, member 29 
SLC25A45              0.230   solute carrier family 25, member 45 isoform a [Homo...
SLC25A2               0.216   solute carrier family 25 member 2 
C14orf68              0.215   chromosome 14 open reading frame 68 
SLC25A15              0.209   mitochondrial ornithine transporter 1 
SLC25A45              0.172   solute carrier family 25, member 45 isoform b [Homo...
SLC25A13              0.159   solute carrier family 25, member 13 isoform 2 
SLC25A13              0.159   solute carrier family 25, member 13 isoform 1 [Homo...
SLC25A12              0.155   solute carrier family 25, member 12 
SLC25A21              0.135   solute carrier family 25 (mitochondrial oxodicarboxy...
SLC25A32              0.133   solute carrier family 25, member 32 
SLC25A1               0.130   solute carrier family 25 (mitochondrial carrier; cit...
SLC25A16              0.130   solute carrier family 25, member 16 
SLC25A39              0.122   solute carrier family 25, member 39 isoform b 
UCP1                  0.120   uncoupling protein 1 
UCP3                  0.120   uncoupling protein 3 isoform UCP3L 
SLC25A39              0.117   solute carrier family 25, member 39 isoform a [Homo...
SLC25A24              0.117   solute carrier family 25 member 24 isoform 1 
SLC25A24              0.117   solute carrier family 25 member 24 isoform 2 
SLC25A22              0.115   mitochondrial glutamate carrier 1 
SLC25A33              0.113   mitochondrial carrier protein MGC4399 
SLC25A36              0.111   solute carrier family 25, member 36 isoform a [Homo...
SLC25A38              0.110   solute carrier family 25, member 38 
SLC25A42              0.108   solute carrier family 25, member 42 
UCP3                  0.108   uncoupling protein 3 isoform UCP3S 
SLC25A18              0.108   solute carrier 
UCP2                  0.105   uncoupling protein 2 
SLC25A37              0.105   solute carrier family 25, member 37 
SLC25A36              0.103   solute carrier family 25, member 36 isoform b [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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