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Search of human proteins with 6912366
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|6912366 F-box only protein 5 isoform a [Homo sapiens]
(447 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|6912366 F-box only protein 5 isoform a [Homo sapiens] 907 0.0
gi|215982802 F-box only protein 5 isoform b [Homo sapiens] 813 0.0
gi|117606347 F-box protein 43 isoform a [Homo sapiens] 149 7e-36
gi|117606351 F-box protein 43 isoform b [Homo sapiens] 149 7e-36
gi|28195390 tripartite motif-containing 42 [Homo sapiens] 33 0.40
gi|117935038 cylicin, basic protein of sperm head cytoskeleton 1... 33 0.69
gi|35493801 ring finger protein 19 [Homo sapiens] 33 0.69
gi|35493782 ring finger protein 19 [Homo sapiens] 33 0.69
gi|153791497 ciliary rootlet coiled-coil [Homo sapiens] 32 1.2
gi|18379366 zinc metallopeptidase STE24 [Homo sapiens] 32 1.5
gi|62243658 PI-3-kinase-related kinase SMG-1 [Homo sapiens] 32 1.5
gi|169790973 parkin isoform 3 [Homo sapiens] 31 2.0
gi|169790971 parkin isoform 2 [Homo sapiens] 31 2.0
gi|169790969 parkin isoform 1 [Homo sapiens] 31 2.0
gi|6715600 golgi autoantigen, golgin subfamily a, 4 [Homo sapiens] 31 2.0
gi|48928046 F-box and WD repeat domain containing 11 isoform B [... 31 2.0
gi|188219577 ring finger protein 19B isoform a [Homo sapiens] 31 2.6
gi|188219579 ring finger protein 19B isoform b [Homo sapiens] 31 2.6
gi|4502477 beta-transducin repeat containing protein isoform 2 [... 30 4.4
gi|73747889 a disintegrin and metalloprotease domain 17 prepropr... 30 4.4
gi|16117783 beta-transducin repeat containing protein isoform 1 ... 30 4.4
gi|21327680 agouti signaling protein precursor [Homo sapiens] 30 4.4
gi|166063995 transcription factor IIIA [Homo sapiens] 30 4.4
gi|213021160 hypothetical protein LOC163882 isoform 1 [Homo sapi... 30 4.4
gi|163644316 hypothetical protein LOC23255 [Homo sapiens] 30 4.4
gi|24308171 zinc finger protein 280C [Homo sapiens] 30 5.8
gi|59710104 plexin A3 [Homo sapiens] 30 5.8
gi|4505221 matrix metalloproteinase 8 preproprotein [Homo sapiens] 29 7.6
gi|4826980 nuclear receptor subfamily 1, group H, member 4 [Homo... 29 7.6
gi|54633315 deoxynucleotidyltransferase, terminal, interacting p... 29 7.6
>gi|6912366 F-box only protein 5 isoform a [Homo sapiens]
Length = 447
Score = 907 bits (2345), Expect = 0.0
Identities = 447/447 (100%), Positives = 447/447 (100%)
Query: 1 MSRRPCSCALRPPRCSCSASPSAVTAAGRPRPSDSCKEESSTLSVKMKCDFNCNHVHSGL 60
MSRRPCSCALRPPRCSCSASPSAVTAAGRPRPSDSCKEESSTLSVKMKCDFNCNHVHSGL
Sbjct: 1 MSRRPCSCALRPPRCSCSASPSAVTAAGRPRPSDSCKEESSTLSVKMKCDFNCNHVHSGL 60
Query: 61 KLVKPDDIGRLVSYTPAYLEGSCKDCIKDYERLSCIGSPIVSPRIVQLETESKRLHNKEN 120
KLVKPDDIGRLVSYTPAYLEGSCKDCIKDYERLSCIGSPIVSPRIVQLETESKRLHNKEN
Sbjct: 61 KLVKPDDIGRLVSYTPAYLEGSCKDCIKDYERLSCIGSPIVSPRIVQLETESKRLHNKEN 120
Query: 121 QHVQQTLNSTNEIEALETSRLYEDSGYSSFSLQSGLSEHEEGSLLEENFGDSLQSCLLQI 180
QHVQQTLNSTNEIEALETSRLYEDSGYSSFSLQSGLSEHEEGSLLEENFGDSLQSCLLQI
Sbjct: 121 QHVQQTLNSTNEIEALETSRLYEDSGYSSFSLQSGLSEHEEGSLLEENFGDSLQSCLLQI 180
Query: 181 QSPDQYPNKNLLPVLHFEKVVCSTLKKNAKRNPKVDREMLKEIIARGNFRLQNIIGRKMG 240
QSPDQYPNKNLLPVLHFEKVVCSTLKKNAKRNPKVDREMLKEIIARGNFRLQNIIGRKMG
Sbjct: 181 QSPDQYPNKNLLPVLHFEKVVCSTLKKNAKRNPKVDREMLKEIIARGNFRLQNIIGRKMG 240
Query: 241 LECVDILSELFRRGLRHVLATILAQLSDMDLINVSKVSTTWKKILEDDKGAFQLYSKAIQ 300
LECVDILSELFRRGLRHVLATILAQLSDMDLINVSKVSTTWKKILEDDKGAFQLYSKAIQ
Sbjct: 241 LECVDILSELFRRGLRHVLATILAQLSDMDLINVSKVSTTWKKILEDDKGAFQLYSKAIQ 300
Query: 301 RVTENNNKFSPHASTREYVMFRTPLASVQKSAAQTSLKKDAQTKLSNQGDQKGSTYSRHN 360
RVTENNNKFSPHASTREYVMFRTPLASVQKSAAQTSLKKDAQTKLSNQGDQKGSTYSRHN
Sbjct: 301 RVTENNNKFSPHASTREYVMFRTPLASVQKSAAQTSLKKDAQTKLSNQGDQKGSTYSRHN 360
Query: 361 EFSEVAKTLKKNESLKACIRCNSPAKYDCYLQRATCKREGCGFDYCTKCLCNYHTTKDCS 420
EFSEVAKTLKKNESLKACIRCNSPAKYDCYLQRATCKREGCGFDYCTKCLCNYHTTKDCS
Sbjct: 361 EFSEVAKTLKKNESLKACIRCNSPAKYDCYLQRATCKREGCGFDYCTKCLCNYHTTKDCS 420
Query: 421 DGKLLKASCKIGPLPGTKKSKKNLRRL 447
DGKLLKASCKIGPLPGTKKSKKNLRRL
Sbjct: 421 DGKLLKASCKIGPLPGTKKSKKNLRRL 447
>gi|215982802 F-box only protein 5 isoform b [Homo sapiens]
Length = 401
Score = 813 bits (2101), Expect = 0.0
Identities = 401/401 (100%), Positives = 401/401 (100%)
Query: 47 MKCDFNCNHVHSGLKLVKPDDIGRLVSYTPAYLEGSCKDCIKDYERLSCIGSPIVSPRIV 106
MKCDFNCNHVHSGLKLVKPDDIGRLVSYTPAYLEGSCKDCIKDYERLSCIGSPIVSPRIV
Sbjct: 1 MKCDFNCNHVHSGLKLVKPDDIGRLVSYTPAYLEGSCKDCIKDYERLSCIGSPIVSPRIV 60
Query: 107 QLETESKRLHNKENQHVQQTLNSTNEIEALETSRLYEDSGYSSFSLQSGLSEHEEGSLLE 166
QLETESKRLHNKENQHVQQTLNSTNEIEALETSRLYEDSGYSSFSLQSGLSEHEEGSLLE
Sbjct: 61 QLETESKRLHNKENQHVQQTLNSTNEIEALETSRLYEDSGYSSFSLQSGLSEHEEGSLLE 120
Query: 167 ENFGDSLQSCLLQIQSPDQYPNKNLLPVLHFEKVVCSTLKKNAKRNPKVDREMLKEIIAR 226
ENFGDSLQSCLLQIQSPDQYPNKNLLPVLHFEKVVCSTLKKNAKRNPKVDREMLKEIIAR
Sbjct: 121 ENFGDSLQSCLLQIQSPDQYPNKNLLPVLHFEKVVCSTLKKNAKRNPKVDREMLKEIIAR 180
Query: 227 GNFRLQNIIGRKMGLECVDILSELFRRGLRHVLATILAQLSDMDLINVSKVSTTWKKILE 286
GNFRLQNIIGRKMGLECVDILSELFRRGLRHVLATILAQLSDMDLINVSKVSTTWKKILE
Sbjct: 181 GNFRLQNIIGRKMGLECVDILSELFRRGLRHVLATILAQLSDMDLINVSKVSTTWKKILE 240
Query: 287 DDKGAFQLYSKAIQRVTENNNKFSPHASTREYVMFRTPLASVQKSAAQTSLKKDAQTKLS 346
DDKGAFQLYSKAIQRVTENNNKFSPHASTREYVMFRTPLASVQKSAAQTSLKKDAQTKLS
Sbjct: 241 DDKGAFQLYSKAIQRVTENNNKFSPHASTREYVMFRTPLASVQKSAAQTSLKKDAQTKLS 300
Query: 347 NQGDQKGSTYSRHNEFSEVAKTLKKNESLKACIRCNSPAKYDCYLQRATCKREGCGFDYC 406
NQGDQKGSTYSRHNEFSEVAKTLKKNESLKACIRCNSPAKYDCYLQRATCKREGCGFDYC
Sbjct: 301 NQGDQKGSTYSRHNEFSEVAKTLKKNESLKACIRCNSPAKYDCYLQRATCKREGCGFDYC 360
Query: 407 TKCLCNYHTTKDCSDGKLLKASCKIGPLPGTKKSKKNLRRL 447
TKCLCNYHTTKDCSDGKLLKASCKIGPLPGTKKSKKNLRRL
Sbjct: 361 TKCLCNYHTTKDCSDGKLLKASCKIGPLPGTKKSKKNLRRL 401
>gi|117606347 F-box protein 43 isoform a [Homo sapiens]
Length = 674
Score = 149 bits (375), Expect = 7e-36
Identities = 118/383 (30%), Positives = 189/383 (49%), Gaps = 41/383 (10%)
Query: 80 EGSCKDCIKDYERLSCIGSPIVSPRIVQLETESKRLHNKENQHVQQTLNSTNEIEALETS 139
EGS ++ ++ ++ G+P V +T K H ++ + +++ E E
Sbjct: 318 EGSFQELLQKHK-----GTPKVG------DTIRKTRHLGRSRRLSTLREQSSQSETEEEK 366
Query: 140 RLYEDSGYSSFSLQSGLSEHEEGSLLEENFGDSLQSCLLQIQSPDQYPNKNLLPVLHFEK 199
++ + S +SE G L + GD S ++P L ++H +
Sbjct: 367 QIVHPDSEKRAAAASAISE---GQLSSDESGDLTFSLKNLSKTP-------ALQLVH--E 414
Query: 200 VVCSTLKKNAKRNPKVDREMLK----EIIARGNFRLQNIIGRKMGLECVDILSELFRRGL 255
+ + +K + N E L+ E IA L +IG+KMG+E +DIL+EL R L
Sbjct: 415 LFMKSKRKRLQENS--GHEFLEQGDGEKIAVLQCILAGLIGKKMGIEKLDILTELKYRNL 472
Query: 256 RHVLATILAQLSDMDLINVSKVSTTWKKILEDDKGAFQ---LYSKAIQRVTENNNKFSPH 312
+H+LA +L L+ L +V KVS W++I+ DK A + Y ++ +E
Sbjct: 473 KHILAMVLESLTAESLCSVWKVSRNWREIVVQDKNANRRRKFYITQLKTDSEGAVLNVED 532
Query: 313 ASTREYVMFRTPLASVQKSAAQTSLKKDAQTKLSNQGD------QKGSTY--SRHNEFSE 364
A+TR ++ R+ L SVQ A +++ + LS G+ T+ S+ E+ +
Sbjct: 533 AATRLQLLNRSALRSVQAQARIPGSQREQGSTLSPWGEVLTPLASSSVTHLSSKQEEYVK 592
Query: 365 VAKTLKKNESLKACIRCNSPAKYDCYLQRATCKREGCGFDYCTKCLCNYHTTKDCSDGKL 424
VAKTL +E+LK C RC SPAKY Y +R C R CGFD+C CLC YH +++CS G
Sbjct: 593 VAKTLFTDEALKPCPRCQSPAKYQPYKKRGLCSRTACGFDFCVLCLCAYHGSEECSRG-A 651
Query: 425 LKASCKIGPLPGTKKSKKNLRRL 447
K + LPG+ +SK+NL+RL
Sbjct: 652 AKPRNRKDALPGSAQSKRNLKRL 674
>gi|117606351 F-box protein 43 isoform b [Homo sapiens]
Length = 708
Score = 149 bits (375), Expect = 7e-36
Identities = 118/383 (30%), Positives = 189/383 (49%), Gaps = 41/383 (10%)
Query: 80 EGSCKDCIKDYERLSCIGSPIVSPRIVQLETESKRLHNKENQHVQQTLNSTNEIEALETS 139
EGS ++ ++ ++ G+P V +T K H ++ + +++ E E
Sbjct: 352 EGSFQELLQKHK-----GTPKVG------DTIRKTRHLGRSRRLSTLREQSSQSETEEEK 400
Query: 140 RLYEDSGYSSFSLQSGLSEHEEGSLLEENFGDSLQSCLLQIQSPDQYPNKNLLPVLHFEK 199
++ + S +SE G L + GD S ++P L ++H +
Sbjct: 401 QIVHPDSEKRAAAASAISE---GQLSSDESGDLTFSLKNLSKTP-------ALQLVH--E 448
Query: 200 VVCSTLKKNAKRNPKVDREMLK----EIIARGNFRLQNIIGRKMGLECVDILSELFRRGL 255
+ + +K + N E L+ E IA L +IG+KMG+E +DIL+EL R L
Sbjct: 449 LFMKSKRKRLQENS--GHEFLEQGDGEKIAVLQCILAGLIGKKMGIEKLDILTELKYRNL 506
Query: 256 RHVLATILAQLSDMDLINVSKVSTTWKKILEDDKGAFQ---LYSKAIQRVTENNNKFSPH 312
+H+LA +L L+ L +V KVS W++I+ DK A + Y ++ +E
Sbjct: 507 KHILAMVLESLTAESLCSVWKVSRNWREIVVQDKNANRRRKFYITQLKTDSEGAVLNVED 566
Query: 313 ASTREYVMFRTPLASVQKSAAQTSLKKDAQTKLSNQGD------QKGSTY--SRHNEFSE 364
A+TR ++ R+ L SVQ A +++ + LS G+ T+ S+ E+ +
Sbjct: 567 AATRLQLLNRSALRSVQAQARIPGSQREQGSTLSPWGEVLTPLASSSVTHLSSKQEEYVK 626
Query: 365 VAKTLKKNESLKACIRCNSPAKYDCYLQRATCKREGCGFDYCTKCLCNYHTTKDCSDGKL 424
VAKTL +E+LK C RC SPAKY Y +R C R CGFD+C CLC YH +++CS G
Sbjct: 627 VAKTLFTDEALKPCPRCQSPAKYQPYKKRGLCSRTACGFDFCVLCLCAYHGSEECSRG-A 685
Query: 425 LKASCKIGPLPGTKKSKKNLRRL 447
K + LPG+ +SK+NL+RL
Sbjct: 686 AKPRNRKDALPGSAQSKRNLKRL 708
>gi|28195390 tripartite motif-containing 42 [Homo sapiens]
Length = 723
Score = 33.5 bits (75), Expect = 0.40
Identities = 40/171 (23%), Positives = 74/171 (43%), Gaps = 10/171 (5%)
Query: 210 KRNPKVDREMLKEIIARGNFRLQNIIGRK--MGLECVDILSELFRRGLRHVLATILAQLS 267
K + K D+E ++ I G +L++I+ K + +E ++ L ++ + + +++
Sbjct: 362 KNSFKADKEAKRKEIRNGFLKLRSILQEKEKIIMEQIENLEVSRQKEIEKYVYVTTMKVN 421
Query: 268 DMD-LINVSKVSTTWKKILEDDKGAFQLYSKAIQRVTENN--NKFSPHASTREYVMFRTP 324
+MD LI SK + + E + AF +K + E+ + P R + + P
Sbjct: 422 EMDGLIAYSK-----EALKETGQVAFLQSAKILVDQIEDGIQTTYRPDPQLRLHSINYVP 476
Query: 325 LASVQKSAAQTSLKKDAQTKLSNQGDQKGSTYSRHNEFSEVAKTLKKNESL 375
L V+ S+A L K+ + GD S Y H+E K SL
Sbjct: 477 LDFVELSSAIHELFPTGPKKVRSSGDSLPSPYPVHSETMIARKVTFSTHSL 527
>gi|117935038 cylicin, basic protein of sperm head cytoskeleton 1
[Homo sapiens]
Length = 651
Score = 32.7 bits (73), Expect = 0.69
Identities = 38/196 (19%), Positives = 74/196 (37%), Gaps = 5/196 (2%)
Query: 181 QSPDQYPNKNLLPVLHFEKVVCSTLKKNAKRNPKVDREMLKEIIARGNFRLQNIIGRKMG 240
QS + P K V + K++ K ++ E + N +++ K
Sbjct: 171 QSKKSKSSSETNPESQNSKTVSKNCSQKDKKDSKNSKKTNTEFLHTKNNPKKDL---KRS 227
Query: 241 LECVDILSELFRRGLRHVLATILAQLSDMDLINVSKVSTTWKKILEDDKGAFQLYSKAIQ 300
D +SE+ +V +L SD + IN + + + K Y+K +
Sbjct: 228 KTSNDPISEICSENSLNVDFLMLVGQSDDESINFDAWLRNYSQ--NNSKNYSLKYTKYTK 285
Query: 301 RVTENNNKFSPHASTREYVMFRTPLASVQKSAAQTSLKKDAQTKLSNQGDQKGSTYSRHN 360
+ T+ N K S A + + + V+K+ + KKD + + + G +
Sbjct: 286 KDTKKNAKKSSDAESEDSKDAKKDSKKVKKNVKKDDKKKDVKKDTESTDAESGDSKDERK 345
Query: 361 EFSEVAKTLKKNESLK 376
+ + K LKK++ K
Sbjct: 346 DTKKDKKKLKKDDKKK 361
>gi|35493801 ring finger protein 19 [Homo sapiens]
Length = 838
Score = 32.7 bits (73), Expect = 0.69
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 393 RATCKREGCGFDYCTKCLCNYHTTKDCSDGKLLKA 427
+ TC REGCG ++C C +H + C + +A
Sbjct: 238 KLTCGREGCGTEFCYHCKQIWHPNQTCDAARQERA 272
>gi|35493782 ring finger protein 19 [Homo sapiens]
Length = 838
Score = 32.7 bits (73), Expect = 0.69
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 393 RATCKREGCGFDYCTKCLCNYHTTKDCSDGKLLKA 427
+ TC REGCG ++C C +H + C + +A
Sbjct: 238 KLTCGREGCGTEFCYHCKQIWHPNQTCDAARQERA 272
>gi|153791497 ciliary rootlet coiled-coil [Homo sapiens]
Length = 2017
Score = 32.0 bits (71), Expect = 1.2
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 10/82 (12%)
Query: 101 VSPRIVQLETESKRLHNKENQHVQQTLNSTNEIEALETSRLYEDSGYSSFSLQSGLSEHE 160
+S R+ +L KRL + + Q + T ++EALE+ RL E + E E
Sbjct: 395 LSARVTELGLAVKRLEKQNLEKDQVNKDLTEKLEALESLRLQEQAAL----------ETE 444
Query: 161 EGSLLEENFGDSLQSCLLQIQS 182
+G L++ D Q+ L +S
Sbjct: 445 DGEGLQQTLRDLAQAVLSDSES 466
>gi|18379366 zinc metallopeptidase STE24 [Homo sapiens]
Length = 475
Score = 31.6 bits (70), Expect = 1.5
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 108 LETESKRLHNKENQHVQQTLNSTNEIEALETSRLYEDSGYSSFSLQSGLSEHEEGSLL 165
L +R++ K HV L + E E SRLY+ S+FS SGL EG+L+
Sbjct: 37 LAQRQRRIY-KTTTHVPPELGQIMDSETFEKSRLYQ-LDKSTFSFWSGLYSETEGTLI 92
>gi|62243658 PI-3-kinase-related kinase SMG-1 [Homo sapiens]
Length = 3661
Score = 31.6 bits (70), Expect = 1.5
Identities = 26/111 (23%), Positives = 54/111 (48%), Gaps = 8/111 (7%)
Query: 104 RIVQLETESKRLHNKENQHVQQTLNSTNEIE-ALETSRLYEDSGYSSFSLQSGLSEHEEG 162
RI QLE E KR+ N ++ + E AL ++ S + + HE+
Sbjct: 1980 RIQQLEDEVKRVQNNNTLRKEEKIAIMREKHTALMKPIVFALEHVRSITAAPAETPHEKW 2039
Query: 163 SLLEENFGDSLQSCLLQIQSP--DQYPNKNLLPVLHFEKVVCSTLKKNAKR 211
++N+GD++++ L ++++P P + +P F++++ S ++ KR
Sbjct: 2040 --FQDNYGDAIENALEKLKTPLNPAKPGSSWIP---FKEIMLSLQQRAQKR 2085
>gi|169790973 parkin isoform 3 [Homo sapiens]
Length = 316
Score = 31.2 bits (69), Expect = 2.0
Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 350 DQKGSTYSRHNEFSEVAKTLKKNESLKACIRCNSPAKYDCYLQRATCKREGCGFDYCTKC 409
D++ + +R S+ +T+KK + K C RC+ P + + C + C ++C C
Sbjct: 245 DERAAEQARWEAASK--ETIKK--TTKPCPRCHVPVEKNGGCMHMKCPQPQCRLEWCWNC 300
Query: 410 LCNYH 414
C ++
Sbjct: 301 GCEWN 305
>gi|169790971 parkin isoform 2 [Homo sapiens]
Length = 437
Score = 31.2 bits (69), Expect = 2.0
Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 350 DQKGSTYSRHNEFSEVAKTLKKNESLKACIRCNSPAKYDCYLQRATCKREGCGFDYCTKC 409
D++ + +R S+ +T+KK + K C RC+ P + + C + C ++C C
Sbjct: 366 DERAAEQARWEAASK--ETIKK--TTKPCPRCHVPVEKNGGCMHMKCPQPQCRLEWCWNC 421
Query: 410 LCNYH 414
C ++
Sbjct: 422 GCEWN 426
>gi|169790969 parkin isoform 1 [Homo sapiens]
Length = 465
Score = 31.2 bits (69), Expect = 2.0
Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 350 DQKGSTYSRHNEFSEVAKTLKKNESLKACIRCNSPAKYDCYLQRATCKREGCGFDYCTKC 409
D++ + +R S+ +T+KK + K C RC+ P + + C + C ++C C
Sbjct: 394 DERAAEQARWEAASK--ETIKK--TTKPCPRCHVPVEKNGGCMHMKCPQPQCRLEWCWNC 449
Query: 410 LCNYH 414
C ++
Sbjct: 450 GCEWN 454
>gi|6715600 golgi autoantigen, golgin subfamily a, 4 [Homo sapiens]
Length = 2230
Score = 31.2 bits (69), Expect = 2.0
Identities = 51/272 (18%), Positives = 107/272 (39%), Gaps = 30/272 (11%)
Query: 105 IVQLETESKRLHNKENQHVQQTLNSTNEIEALETSRLYEDSGYSSFSLQSGLSEHEEGSL 164
+ +LE + ++L ++N +T+++E E + S + + E G+
Sbjct: 1271 VSELEAQLRQLTEEQNTLNISFQQATHQLEEKENQIKSMKADIESLVTEKEALQKEGGN- 1329
Query: 165 LEENFGDSLQSCLLQIQSPDQYPNKNLLPVLHFEKVVCSTLKKNAKRNPKVDREMLKEII 224
++ +SC+ Q++ K L E + TL K + KV+ L + +
Sbjct: 1330 -QQQAASEKESCITQLK-------KELS-----ENINAVTLMKEELKEKKVEISSLSKQL 1376
Query: 225 ARGNFRLQNIIGRKMGLECVDILSELFRRGLRHVLATILAQLSDMDLINVSKVSTTWKKI 284
N +LQN I + L + + +L + +D ++ K+S +
Sbjct: 1377 TDLNVQLQNSISLSEKEAAISSLRKQYDEEKCELLDQVQDLSFKVDTLSKEKISAL--EQ 1434
Query: 285 LEDDKGAFQLYSKAIQRVTENNNKFSPHASTREYVMFRTPLASVQKSAAQTSLKKDAQTK 344
++D F + K Q ++F+ H +T + + + L S + + +KD Q
Sbjct: 1435 VDDWSNKFSEWKKKAQ------SRFTQHQNTVKELQIQLELKS------KEAYEKDEQIN 1482
Query: 345 -LSNQGDQKGSTYS-RHNEFSEVAKTLKKNES 374
L + DQ+ + E + ++K ES
Sbjct: 1483 LLKEELDQQNKRFDCLKGEMEDDKSKMEKKES 1514
>gi|48928046 F-box and WD repeat domain containing 11 isoform B
[Homo sapiens]
Length = 529
Score = 31.2 bits (69), Expect = 2.0
Identities = 31/165 (18%), Positives = 74/165 (44%), Gaps = 22/165 (13%)
Query: 160 EEGSLLEENFGDSLQSCLLQIQSPDQYPNKNLL-PVLHFEKVVCSTLKKNAKRNPKVDR- 217
E S++E+ + + + +++ Q+ D+ P KN L + + V + K+ ++ N + ++
Sbjct: 2 EPDSVIEDKTIELMNTSVMEDQNEDESPKKNTLWQISNGTSSVIVSRKRPSEGNYQKEKD 61
Query: 218 ---------------EMLKEIIARG-NFRLQNIIGRKMGLECVDILSELFRRGLRHVLAT 261
E ++ +I+R +++ +I + D ++ L +GL H+
Sbjct: 62 LCIKYFDQWSESDQVEFVEHLISRMCHYQHGHINSYLKPMLQRDFITALPEQGLDHIAEN 121
Query: 262 ILAQLSDMDLINVSKVSTTWKKILEDDKGAFQLYSKAIQRVTENN 306
IL+ L L V W++++ + L+ K I+R+ +
Sbjct: 122 ILSYLDARSLCAAELVCKEWQRVISEG----MLWKKLIERMVRTD 162
>gi|188219577 ring finger protein 19B isoform a [Homo sapiens]
Length = 732
Score = 30.8 bits (68), Expect = 2.6
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 393 RATCKREGCGFDYCTKCLCNYHTTKDCSDGKLLKA 427
+ TC+REGC ++C C +H + C + +A
Sbjct: 225 KLTCEREGCQTEFCYHCKQIWHPNQTCDMARQQRA 259
>gi|188219579 ring finger protein 19B isoform b [Homo sapiens]
Length = 587
Score = 30.8 bits (68), Expect = 2.6
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 393 RATCKREGCGFDYCTKCLCNYHTTKDCSDGKLLKA 427
+ TC+REGC ++C C +H + C + +A
Sbjct: 225 KLTCEREGCQTEFCYHCKQIWHPNQTCDMARQQRA 259
>gi|4502477 beta-transducin repeat containing protein isoform 2
[Homo sapiens]
Length = 569
Score = 30.0 bits (66), Expect = 4.4
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Query: 245 DILSELFRRGLRHVLATILAQLSDMDLINVSKVSTTWKKILEDDKGAFQLYSKAIQRVTE 304
D ++ L RGL H+ IL+ L L V W ++ D L+ K I+R+
Sbjct: 143 DFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDG----MLWKKLIERMVR 198
Query: 305 NNNKFSPHASTR 316
++ + A R
Sbjct: 199 TDSLWRGLAERR 210
>gi|73747889 a disintegrin and metalloprotease domain 17
preproprotein [Homo sapiens]
Length = 824
Score = 30.0 bits (66), Expect = 4.4
Identities = 33/134 (24%), Positives = 56/134 (41%), Gaps = 23/134 (17%)
Query: 286 EDDKGAFQLYSKAIQRVTENNNKFSPHASTREYVMFRTPLASVQKSAAQTSLKKDAQTKL 345
ED G + +Y A+ ENN FS + + +++T + Q+ + S K +++
Sbjct: 427 EDQGGKYVMYPIAVSGDHENNKMFS---NCSKQSIYKTIESKAQECFQERSNKVCGNSRV 483
Query: 346 SNQGDQ--KGSTYSRHNEFSEVAKTLKKNESLKACIRCNSPAKYDCYLQ----------R 393
++G++ G Y ++ TLK+ C NSP +C +
Sbjct: 484 -DEGEECDPGIMYLNNDTCCNSDCTLKEGVQ---CSDRNSPCCKNCQFETAQKKCQEAIN 539
Query: 394 ATCKREGCGFDYCT 407
ATCK G YCT
Sbjct: 540 ATCK----GVSYCT 549
>gi|16117783 beta-transducin repeat containing protein isoform 1
[Homo sapiens]
Length = 605
Score = 30.0 bits (66), Expect = 4.4
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Query: 245 DILSELFRRGLRHVLATILAQLSDMDLINVSKVSTTWKKILEDDKGAFQLYSKAIQRVTE 304
D ++ L RGL H+ IL+ L L V W ++ D L+ K I+R+
Sbjct: 179 DFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDG----MLWKKLIERMVR 234
Query: 305 NNNKFSPHASTR 316
++ + A R
Sbjct: 235 TDSLWRGLAERR 246
>gi|21327680 agouti signaling protein precursor [Homo sapiens]
Length = 132
Score = 30.0 bits (66), Expect = 4.4
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 363 SEVAKTLKKNESLKACIRCNSPAKYDCYLQRATCKREG-CGFDYCTKCLCNY 413
+E ++ KK S+K +R +P C R +CK D C C C +
Sbjct: 67 AEKKRSSKKEASMKKVVRPRTPLSAPCVATRNSCKPPAPACCDPCASCQCRF 118
>gi|166063995 transcription factor IIIA [Homo sapiens]
Length = 365
Score = 30.0 bits (66), Expect = 4.4
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
Query: 367 KTLKKNESLKACIRCNSPAKYDCYLQRATCKREGCGFDYCT 407
KT K+ + LK ++ ++P + C C REGCG Y T
Sbjct: 224 KTFKRKDYLKQHMKTHAPERDVC-----RCPREGCGRTYTT 259
>gi|213021160 hypothetical protein LOC163882 isoform 1 [Homo
sapiens]
Length = 725
Score = 30.0 bits (66), Expect = 4.4
Identities = 32/132 (24%), Positives = 51/132 (38%), Gaps = 9/132 (6%)
Query: 100 IVSPRIVQLETESKRLHNKENQHVQQTLNSTNE--IEALETSRLYEDSGYSSFSLQSGLS 157
I+ P + E ++ N+ + LNS E ++ E S YED+ L LS
Sbjct: 521 ILLPEVCMAPEEKGDKDDQLNKETEDYLNSLLEGCLKDTEDSLSYEDNQDDDSDLLQDLS 580
Query: 158 EHEEGSLLEENFGDSLQSCL------LQIQSPDQYPNKNLLPVLHFEKVVCSTLKKNAKR 211
E L+EN S +SCL +I+ + P + L+ +L +
Sbjct: 581 PEEASYSLQENL-PSDESCLSLDDLAKRIEIAEVVPTEGLVSILKKRNDTVGDHPAQMQH 639
Query: 212 NPKVDREMLKEI 223
P R +EI
Sbjct: 640 KPSKRRVRFQEI 651
>gi|163644316 hypothetical protein LOC23255 [Homo sapiens]
Length = 1586
Score = 30.0 bits (66), Expect = 4.4
Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
Query: 97 GSPIVSPRIVQLETESKRLHNKENQHVQQTLNSTNEIEALETSRLY----EDSGYSSFSL 152
G P++ + V +E +L H ++T TN+I +E LY ++ S +L
Sbjct: 632 GPPVLPEQSVSIEELQGQLVQAARLHQEETETFTNKIHKMEEEHLYALRWKELEMHSLAL 691
Query: 153 QSGLSEH---EEGSLLEENFGDSLQSCLL 178
Q+ L E +E +L+++ Q+ L
Sbjct: 692 QNTLHERTWSDEKNLMQQELRSLKQNIFL 720
>gi|24308171 zinc finger protein 280C [Homo sapiens]
Length = 737
Score = 29.6 bits (65), Expect = 5.8
Identities = 26/112 (23%), Positives = 40/112 (35%), Gaps = 22/112 (19%)
Query: 307 NKFSPHASTREYVMFRTPLASVQKSAAQTSLKKDAQTKLSNQGDQKGSTYSRHNEFSEVA 366
+K ST V P + KS A+ S K+ Q +R N+ S
Sbjct: 563 SKLHATTSTASKVNTSKPRGRIAKSKAKPSYKQKRQR-------------NRKNKMSLAL 609
Query: 367 KTLKKNESLKACIRCNSPAK-----YDCYLQRATCKREGCGFDYCTKCLCNY 413
K ++ + CI C+S K + Y+ + CK C K N+
Sbjct: 610 KNIRCRRGIHKCIECHSKIKDFASHFSIYIHCSFCKYN----TNCNKAFVNH 657
>gi|59710104 plexin A3 [Homo sapiens]
Length = 1871
Score = 29.6 bits (65), Expect = 5.8
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 16 SCSASPSAVTAAGRPRPSDSCKEESSTLSVKMKCDFNCNHVHS 58
+CS S ++ G P P CK + S +C F VHS
Sbjct: 637 NCSVLQSCMSCVGSPYPCHWCKYRHTCTSRPHECSFQEGRVHS 679
>gi|4505221 matrix metalloproteinase 8 preproprotein [Homo sapiens]
Length = 467
Score = 29.3 bits (64), Expect = 7.6
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 70 RLVSYTPAYLEGSCKDCIKDYERLSCIGSPIVSPRIVQLETE 111
R+ +YTP E + IKD L + SP++ RI Q E +
Sbjct: 116 RIRNYTPQLSEAEVERAIKDAFELWSVASPLIFTRISQGEAD 157
>gi|4826980 nuclear receptor subfamily 1, group H, member 4 [Homo
sapiens]
Length = 472
Score = 29.3 bits (64), Expect = 7.6
Identities = 13/56 (23%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Query: 78 YLEGSCKDC-IKDYERLSCIGSPIVSPRIVQLETESKRLHNKENQHVQQTLNSTNE 132
Y+ C++C ++ + + + +++ +++ +SKRL QH QT+N +E
Sbjct: 174 YMRRKCQECRLRKCKEMGMLAECLLT----EIQCKSKRLRKNVKQHADQTVNEDSE 225
>gi|54633315 deoxynucleotidyltransferase, terminal, interacting
protein 2 [Homo sapiens]
Length = 756
Score = 29.3 bits (64), Expect = 7.6
Identities = 17/65 (26%), Positives = 27/65 (41%)
Query: 322 RTPLASVQKSAAQTSLKKDAQTKLSNQGDQKGSTYSRHNEFSEVAKTLKKNESLKACIRC 381
RTP A +KS SL K + + + S YS + + ++ + L AC
Sbjct: 60 RTPKARKRKSRTTGSLPKGTEPSTDGETSEAESNYSVSEHHDTILRVTRRRQILIACSPV 119
Query: 382 NSPAK 386
+S K
Sbjct: 120 SSVRK 124
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.130 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,488,028
Number of Sequences: 37866
Number of extensions: 787367
Number of successful extensions: 2788
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 2748
Number of HSP's gapped (non-prelim): 57
length of query: 447
length of database: 18,247,518
effective HSP length: 105
effective length of query: 342
effective length of database: 14,271,588
effective search space: 4880883096
effective search space used: 4880883096
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.