Guide to the Human Genome
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Name: RNF19B Sequence: fasta or formatted (587aa) NCBI GI: 188219579
Description:

ring finger protein 19B isoform b

Referenced in:

Ring Finger Proteins

Other entries for this name:
alt prot [732aa] ring finger protein 19B isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.9         64           6
 C cysteine            4.9         29           1
 D aspartate           4.1         24           2
 E glutamate           6.1         36           2
 F phenylalanine       1.7         10           1
 G glycine             8.9         52           3
 H histidine           2.4         14           1
 I isoleucine          5.8         34           2
 K lysine              4.4         26           3
 L leucine             7.2         42           3
 M methionine          2.0         12           1
 N asparagine          1.5          9           1
 P proline             8.9         52           4
 Q glutamine           2.6         15           2
 R arginine            6.6         39           4
 S serine              9.5         56           2
 T threonine           3.9         23           1
 V valine              4.6         27           2
 W tryptophan          1.2          7           1
 Y tyrosine            2.7         16           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ring finger protein 19B isoform b 
RNF19B                0.986   ring finger protein 19B isoform a 
RNF19A                0.586   ring finger protein 19 
RNF19A                0.586   ring finger protein 19 
RNF144A               0.074   ring finger protein 144 
RNF144B               0.066   IBR domain containing 2 
ARIH1                 0.062   ariadne ubiquitin-conjugating enzyme E2 binding pro...
ANKIB1                0.057   ankyrin repeat and IBR domain containing 1 
ARIH2                 0.055   ariadne homolog 2 
CUL9                  0.054   p53-associated parkin-like cytoplasmic protein [Homo...
RNF14                 0.045   ring finger protein 14 isoform 1 
RNF14                 0.045   ring finger protein 14 isoform 1 
RNF14                 0.045   ring finger protein 14 isoform 1 
RNF14                 0.045   ring finger protein 14 isoform 2 
RNF14                 0.045   ring finger protein 14 isoform 1 
RNF31                 0.039   ring finger protein 31 
RBCK1                 0.037   RanBP-type and C3HC4-type zinc finger containing 1 is...
RBCK1                 0.037   RanBP-type and C3HC4-type zinc finger containing 1 ...
RNF216                0.031   ring finger protein 216 isoform b 
RNF216                0.031   ring finger protein 216 isoform a 
TRIM28                0.028   tripartite motif-containing 28 protein 
PARK2                 0.026   parkin isoform 3 
PARK2                 0.026   parkin isoform 2 
PARK2                 0.026   parkin isoform 1 
RNF217                0.025   ring finger protein 217 
FSCB                  0.021   fibrous sheath CABYR binding protein 
ZFPM1                 0.021   zinc finger protein, multitype 1 
LOC100291544          0.020   PREDICTED: hypothetical protein XP_002347761 
TRIM16                0.020   tripartite motif-containing 16 
LOC100293980          0.018   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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