Guide to the Human Genome
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Name: PLXNA3 Sequence: fasta or formatted (1871aa) NCBI GI: 59710104
Description:

plexin A3

Referenced in:

Semaphorins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8        128           3
 C cysteine            3.3         61           2
 D aspartate           5.3        100           2
 E glutamate           5.1         95           2
 F phenylalanine       3.8         71           2
 G glycine             6.2        116           3
 H histidine           2.8         52           2
 I isoleucine          4.2         78           2
 K lysine              4.1         76           2
 L leucine            11.5        215           5
 M methionine          1.6         30           2
 N asparagine          2.9         54           2
 P proline             5.8        109           3
 Q glutamine           4.8         90           2
 R arginine            6.2        116           3
 S serine              8.3        155           3
 T threonine           6.0        113           2
 V valine              7.4        138           2
 W tryptophan          1.0         18           1
 Y tyrosine            3.0         56           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   plexin A3 
PLXNA1                0.671   plexin A1 
PLXNA4                0.606   plexin A4 isoform 1 
PLXNA2                0.596   plexin A2 
PLXNB3                0.236   plexin B3 isoform 2 
PLXNB3                0.236   plexin B3 isoform 1 
PLXNB2                0.231   plexin B2 
PLXND1                0.222   plexin D1 
PLXNB1                0.193   plexin B1 
PLXNB1                0.193   plexin B1 
PLXNA4                0.116   plexin A4 isoform 3 
PLXNA4                0.116   plexin A4 isoform 2 
PLXNC1                0.101   plexin C1 
MET                   0.028   met proto-oncogene isoform b precursor 
MET                   0.028   met proto-oncogene isoform a precursor 
MST1R                 0.024   macrophage stimulating 1 receptor precursor 
SEMA4A                0.013   semaphorin B 
SEMA4C                0.012   semaphorin 4C 
PKHD1L1               0.012   fibrocystin L 
SEMA4B                0.010   semaphorin 4B precursor 
SEMA4B                0.010   semaphorin 4B precursor 
SEMA4G                0.009   semaphorin 4G 
SEMA6D                0.007   semaphorin 6D isoform 1 precursor 
SEMA6D                0.007   semaphorin 6D isoform 5 precursor 
SEMA6D                0.007   semaphorin 6D isoform 4 precursor 
SEMA6D                0.007   semaphorin 6D isoform 3 precursor 
SEMA6D                0.007   semaphorin 6D isoform 2 precursor 
SEMA5B                0.007   semaphorin 5B isoform 1 
SEMA7A                0.007   semaphorin 7A isoform 1 preproprotein 
SEMA7A                0.007   semaphorin 7A isoform 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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