TRIM42 24654

Name: TRIM42	Sequence: fasta or formatted (723aa)		NCBI GI: 28195390
Description: tripartite motif-containing 42		Referenced in: Tripartite Motif Family
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.1 37 2 C cysteine 7.2 52 3 D aspartate 4.6 33 1 E glutamate 5.8 42 2 F phenylalanine 4.1 30 2 G glycine 3.5 25 1 H histidine 3.7 27 2 I isoleucine 5.7 41 2 K lysine 6.5 47 2 L leucine 7.5 54 2 M methionine 2.4 17 1 N asparagine 5.8 42 2 P proline 4.6 33 2 Q glutamine 4.4 32 2 R arginine 5.4 39 2 S serine 8.9 64 3 T threonine 5.3 38 2 V valine 4.8 35 2 W tryptophan 1.2 9 1 Y tyrosine 3.6 26 3			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 tripartite motif-containing 42 TRIM36 0.055 tripartite motif-containing 36 isoform 1 MID2 0.052 midline 2 isoform 2 MID2 0.052 midline 2 isoform 1 MID1 0.052 midline 1 MID1 0.052 midline 1 MID1 0.052 midline 1 TRIM46 0.041 tripartite motif-containing 46 TRIM45 0.036 tripartite motif-containing 45 isoform 2 TRIM45 0.036 tripartite motif-containing 45 isoform 1 TRIM28 0.034 tripartite motif-containing 28 protein TRIM33 0.033 tripartite motif-containing 33 protein isoform beta ... TRIM33 0.033 tripartite motif-containing 33 protein isoform alpha... TRIM29 0.026 tripartite motif protein TRIM29 TRIM25 0.026 tripartite motif-containing 25 TRIM8 0.026 tripartite motif-containing 8 TRIM56 0.025 tripartite motif-containing 56 TRIM71 0.023 tripartite motif-containing 71 TRIM34 0.023 tripartite motif protein 34 isoform 3 TRIM34 0.023 tripartite motif protein 34 isoform 1 TRIM34 0.023 tripartite motif protein 34 isoform 1 TRIM6-TRIM34 0.023 tripartite motif-containing 6 and tripartite motif-c... TRIM24 0.023 transcriptional intermediary factor 1 alpha isoform ... TRIM24 0.023 transcriptional intermediary factor 1 alpha isoform ... TRIM38 0.022 tripartite motif-containing 38 TRIM63 0.021 muscle specific ring finger protein 1 KRTAP5-9 0.019 keratin associated protein 5-9 TRIM22 0.018 tripartite motif-containing 22 TRIM16 0.018 tripartite motif-containing 16 TRIM60 0.017 ring finger protein 129 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.