Guide to the Human Genome
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Name: ASIP Sequence: fasta or formatted (132aa) NCBI GI: 21327680
Description:

agouti signaling protein precursor

Referenced in:

Peptide and Protein G-coupled Signals

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.1         12           2
 C cysteine            8.3         11           2
 D aspartate           3.8          5           2
 E glutamate           3.0          4           2
 F phenylalanine       3.8          5           2
 G glycine             0.8          1           1
 H histidine           0.8          1           1
 I isoleucine          1.5          2           1
 K lysine              9.1         12           2
 L leucine            11.4         15           3
 M methionine          1.5          2           1
 N asparagine          4.5          6           1
 P proline             7.6         10           2
 Q glutamine           1.5          2           1
 R arginine            9.1         12           1
 S serine             12.9         17           2
 T threonine           3.8          5           1
 V valine              7.6         10           2
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   agouti signaling protein precursor 
AGRP                  0.107   agouti related protein homolog isoform 1 
AGRP                  0.107   agouti related protein homolog isoform 2 
KRTAP10-7             0.037   keratin associated protein 10-7 
KRTAP10-3             0.033   keratin associated protein 10-3 
KRTAP10-8             0.029   keratin associated protein 10-8 
KRTAP10-4             0.029   keratin associated protein 10-4 
KRTAP10-11            0.029   keratin associated protein 10-11 
KRTAP10-1             0.025   keratin associated protein 10-1 
LOC100130599          0.025   PREDICTED: hypothetical protein 
LOC100130599          0.025   PREDICTED: similar to Keratin-associated protein 10...
RAB40B                0.025   RAB40B, member RAS oncogene family 
FBXO5                 0.020   F-box only protein 5 isoform b 
FBXO5                 0.020   F-box only protein 5 isoform a 
AP3D1                 0.020   adaptor-related protein complex 3, delta 1 subunit ...
MT4                   0.020   metallothionein 4 
E2F7                  0.020   E2F transcription factor 7 
KRTAP10-12            0.020   keratin associated protein 10-12 
VEGFA                 0.020   vascular endothelial growth factor A isoform c precu...
WASF2                 0.016   WAS protein family, member 2 
KRT31                 0.016   keratin 31 
MT1F                  0.016   metallothionein 1F 
ZNF831                0.016   zinc finger protein 831 
MLL3                  0.012   myeloid/lymphoid or mixed-lineage leukemia 3 
MBD1                  0.012   methyl-CpG binding domain protein 1 isoform 2 
MBD1                  0.012   methyl-CpG binding domain protein 1 isoform 4 
MBD1                  0.012   methyl-CpG binding domain protein 1 isoform PCM1 [Ho...
MBD1                  0.012   methyl-CpG binding domain protein 1 isoform 1 
MBD1                  0.012   methyl-CpG binding domain protein 1 isoform 3 [Homo...
MT1E                  0.012   metallothionein 1E 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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