Guide to the Human Genome
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Name: SH3PXD2A Sequence: fasta or formatted (1105aa) NCBI GI: 55749544
Description:

SH3 multiple domains 1

Referenced in:

Superoxide Pathway
Non-Receptor Tyrosine Kinase Pathways

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.1         79           3
 C cysteine            1.1         12           2
 D aspartate           4.7         52           2
 E glutamate           8.6         95           3
 F phenylalanine       2.4         27           2
 G glycine             6.7         74           2
 H histidine           0.7          8           1
 I isoleucine          4.2         46           2
 K lysine              7.7         85           2
 L leucine             6.2         68           2
 M methionine          0.8          9           1
 N asparagine          3.7         41           2
 P proline             8.7         96           3
 Q glutamine           4.1         45           1
 R arginine            6.4         71           2
 S serine             11.9        132           9
 T threonine           4.5         50           2
 V valine              5.9         65           3
 W tryptophan          1.7         19           2
 Y tyrosine            2.8         31           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   SH3 multiple domains 1 
SH3PXD2B              0.229   SH3 and PX domains 2B 
NCF1                  0.083   neutrophil cytosolic factor 1 
NOXO1                 0.032   NADPH oxidase organizer 1 isoform b 
NOXO1                 0.031   NADPH oxidase organizer 1 isoform c 
NOXO1                 0.030   NADPH oxidase organizer 1 isoform a 
SH3KBP1               0.027   SH3-domain kinase binding protein 1 isoform a 
ITSN2                 0.019   intersectin 2 isoform 3 
ITSN2                 0.019   intersectin 2 isoform 1 
ITSN2                 0.019   intersectin 2 isoform 2 
CD2AP                 0.018   CD2-associated protein 
SH3KBP1               0.018   SH3-domain kinase binding protein 1 isoform b 
NCF4                  0.018   neutrophil cytosolic factor 4 isoform 1 
NCF4                  0.018   neutrophil cytosolic factor 4 isoform 2 
NCK1                  0.018   NCK adaptor protein 1 
ITSN1                 0.017   intersectin 1 isoform ITSN-s 
ITSN1                 0.017   intersectin 1 isoform ITSN-l 
PIK3C2A               0.017   phosphoinositide-3-kinase, class 2 alpha polypeptid...
NCK2                  0.017   NCK adaptor protein 2 isoform A 
NCK2                  0.017   NCK adaptor protein 2 isoform A 
TNRC18                0.015   trinucleotide repeat containing 18 
PIK3C2B               0.014   phosphoinositide-3-kinase, class 2 beta polypeptide...
SRRM2                 0.014   splicing coactivator subunit SRm300 
SCAF1                 0.013   SR-related CTD-associated factor 1 
SETD1A                0.012   SET domain containing 1A 
PSTPIP1               0.012   proline-serine-threonine phosphatase interacting pro...
NPHP1                 0.012   nephrocystin 1 isoform 4 
NPHP1                 0.012   nephrocystin 1 isoform 3 
NPHP1                 0.012   nephrocystin 1 isoform 2 
NPHP1                 0.012   nephrocystin 1 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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