SCAF1 15412

Name: SCAF1	Sequence: fasta or formatted (1312aa)		NCBI GI: 226509740
Description: SR-related CTD-associated factor 1		Referenced in: Capping and Splicing
Composition: Amino acid Percentage Count Longest homopolymer A alanine 9.3 122 4 C cysteine 0.8 11 1 D aspartate 5.7 75 2 E glutamate 8.5 111 18 F phenylalanine 1.1 15 1 G glycine 8.7 114 3 H histidine 1.1 14 1 I isoleucine 1.8 23 1 K lysine 6.3 83 5 L leucine 5.7 75 2 M methionine 0.6 8 1 N asparagine 0.7 9 1 P proline 13.3 174 8 Q glutamine 2.5 33 2 R arginine 9.8 128 6 S serine 13.6 178 7 T threonine 5.5 72 3 V valine 3.5 46 2 W tryptophan 0.5 7 1 Y tyrosine 1.1 14 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 SR-related CTD-associated factor 1 PHRF1 0.058 PHD and ring finger domains 1 SRRM2 0.039 splicing coactivator subunit SRm300 SRRM1 0.039 serine/arginine repetitive matrix 1 SFRS2IP 0.038 splicing factor, arginine/serine-rich 2, interactin... NACA 0.030 nascent polypeptide-associated complex alpha subuni... TCOF1 0.028 Treacher Collins-Franceschetti syndrome 1 isoform e... TCOF1 0.028 Treacher Collins-Franceschetti syndrome 1 isoform a ... TCOF1 0.028 Treacher Collins-Franceschetti syndrome 1 isoform f... TCOF1 0.028 Treacher Collins-Franceschetti syndrome 1 isoform b ... TCOF1 0.027 Treacher Collins-Franceschetti syndrome 1 isoform d... ZC3H18 0.027 zinc finger CCCH-type containing 18 FLJ37078 0.026 hypothetical protein LOC222183 PELP1 0.025 proline, glutamic acid and leucine rich protein 1 [... SFRS4 0.025 splicing factor, arginine/serine-rich 4 TCOF1 0.024 Treacher Collins-Franceschetti syndrome 1 isoform c ... KDM6B 0.023 lysine (K)-specific demethylase 6B LOC100292370 0.023 PREDICTED: hypothetical protein BAT2 0.022 HLA-B associated transcript-2 LOC100170229 0.022 hypothetical protein LOC100170229 GPATCH8 0.022 G patch domain containing 8 CDC2L5 0.022 cell division cycle 2-like 5 isoform 1 CDC2L5 0.022 cell division cycle 2-like 5 isoform 2 SFRS16 0.021 splicing factor, arginine/serine-rich 16 DDX46 0.021 DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 PNN 0.021 pinin, desmosome associated protein ZRANB2 0.021 zinc finger protein 265 isoform 1 NOLC1 0.021 nucleolar and coiled-body phosphoprotein 1 C9orf86 0.020 Rab-like GTP-binding protein 1 isoform 1 MAP7D1 0.020 MAP7 domain containing 1 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.