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Search of human proteins with 52632383
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|52632383 heterogeneous nuclear ribonucleoprotein L isoform a
[Homo sapiens]
(589 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|52632383 heterogeneous nuclear ribonucleoprotein L isoform a ... 1233 0.0
gi|52632385 heterogeneous nuclear ribonucleoprotein L isoform b ... 962 0.0
gi|217416379 heterogeneous nuclear ribonucleoprotein L-like isof... 557 e-158
gi|20149709 heterogeneous nuclear ribonucleoprotein L-like isofo... 557 e-158
gi|4506243 polypyrimidine tract-binding protein 1 isoform a [Hom... 162 6e-40
gi|14165464 polypyrimidine tract-binding protein 1 isoform b [Ho... 160 4e-39
gi|14165466 polypyrimidine tract-binding protein 1 isoform c [Ho... 156 4e-38
gi|38569466 ROD1 regulator of differentiation 1 [Homo sapiens] 153 4e-37
gi|10863997 polypyrimidine tract binding protein 2 [Homo sapiens] 105 1e-22
gi|28558998 polypyrimidine tract-binding protein 1 isoform d [Ho... 70 7e-12
gi|109452587 family with sequence similarity 98, member B isofor... 60 4e-09
gi|4502565 calpain, small subunit 1 [Homo sapiens] 55 1e-07
gi|51599151 calpain, small subunit 1 [Homo sapiens] 55 1e-07
gi|4885597 sine oculis homeobox homolog 3 [Homo sapiens] 55 2e-07
gi|195972866 keratin 10 [Homo sapiens] 54 3e-07
gi|55956899 keratin 9 [Homo sapiens] 54 5e-07
gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo sap... 53 7e-07
gi|197209826 chromosome 2 open reading frame 21 isoform 1 [Homo ... 53 9e-07
gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo sapi... 53 9e-07
gi|109255251 loricrin [Homo sapiens] 52 1e-06
gi|49574532 glycogen synthase kinase 3 alpha [Homo sapiens] 52 2e-06
gi|56699482 hypothetical protein LOC25940 [Homo sapiens] 51 3e-06
gi|4507741 twist [Homo sapiens] 50 4e-06
gi|154091020 leucine-rich repeats and calponin homology (CH) dom... 50 4e-06
gi|31542255 hypothetical protein LOC140706 [Homo sapiens] 50 4e-06
gi|89145413 short stature homeobox 2 isoform a [Homo sapiens] 50 6e-06
gi|110347449 POU domain, class 4, transcription factor 1 [Homo s... 50 6e-06
gi|73427806 v-maf musculoaponeurotic fibrosarcoma oncogene homol... 50 8e-06
gi|5453736 v-maf musculoaponeurotic fibrosarcoma oncogene homolo... 50 8e-06
gi|42544153 leukocyte receptor tyrosine kinase isoform 1 precurs... 50 8e-06
>gi|52632383 heterogeneous nuclear ribonucleoprotein L isoform a
[Homo sapiens]
Length = 589
Score = 1233 bits (3190), Expect = 0.0
Identities = 589/589 (100%), Positives = 589/589 (100%)
Query: 1 MSRRLLPRAEKRRRRLEQRQQPDEQRRRSGAMVKMAAAGGGGGGGRYYGGGSEGGRAPKR 60
MSRRLLPRAEKRRRRLEQRQQPDEQRRRSGAMVKMAAAGGGGGGGRYYGGGSEGGRAPKR
Sbjct: 1 MSRRLLPRAEKRRRRLEQRQQPDEQRRRSGAMVKMAAAGGGGGGGRYYGGGSEGGRAPKR 60
Query: 61 LKTDNAGDQHGGGGGGGGGAGAAGGGGGGENYDDPHKTPASPVVHIRGLIDGVVEADLVE 120
LKTDNAGDQHGGGGGGGGGAGAAGGGGGGENYDDPHKTPASPVVHIRGLIDGVVEADLVE
Sbjct: 61 LKTDNAGDQHGGGGGGGGGAGAAGGGGGGENYDDPHKTPASPVVHIRGLIDGVVEADLVE 120
Query: 121 ALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQKIS 180
ALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQKIS
Sbjct: 121 ALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQKIS 180
Query: 181 RPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQRIVIFRKNGVQAMVEFDS 240
RPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQRIVIFRKNGVQAMVEFDS
Sbjct: 181 RPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQRIVIFRKNGVQAMVEFDS 240
Query: 241 VQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLNVFKNDQDTWDYTNPNLSGQGDPGSNP 300
VQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLNVFKNDQDTWDYTNPNLSGQGDPGSNP
Sbjct: 241 VQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLNVFKNDQDTWDYTNPNLSGQGDPGSNP 300
Query: 301 NKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPPHYEGRRMGPPVGGHRRGPSRYG 360
NKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPPHYEGRRMGPPVGGHRRGPSRYG
Sbjct: 301 NKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPPHYEGRRMGPPVGGHRRGPSRYG 360
Query: 361 PQYGHPPPPPPPPEYGPHADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPG 420
PQYGHPPPPPPPPEYGPHADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPG
Sbjct: 361 PQYGHPPPPPPPPEYGPHADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPG 420
Query: 421 AAMVEMADGYAVDRAITHLNNNFMFGQKLNVCVSKQPAIMPGQSYGLEDGSCSYKDFSES 480
AAMVEMADGYAVDRAITHLNNNFMFGQKLNVCVSKQPAIMPGQSYGLEDGSCSYKDFSES
Sbjct: 421 AAMVEMADGYAVDRAITHLNNNFMFGQKLNVCVSKQPAIMPGQSYGLEDGSCSYKDFSES 480
Query: 481 RNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPSSVKVFSGKSE 540
RNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPSSVKVFSGKSE
Sbjct: 481 RNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPSSVKVFSGKSE 540
Query: 541 RSSSGLLEWESKSDALETLGFLNHYQMKNPNGPYPYTLKLCFSTAQHAS 589
RSSSGLLEWESKSDALETLGFLNHYQMKNPNGPYPYTLKLCFSTAQHAS
Sbjct: 541 RSSSGLLEWESKSDALETLGFLNHYQMKNPNGPYPYTLKLCFSTAQHAS 589
>gi|52632385 heterogeneous nuclear ribonucleoprotein L isoform b
[Homo sapiens]
Length = 456
Score = 962 bits (2488), Expect = 0.0
Identities = 456/456 (100%), Positives = 456/456 (100%)
Query: 134 MPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQKISRPGDSDDSRSVNS 193
MPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQKISRPGDSDDSRSVNS
Sbjct: 1 MPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQKISRPGDSDDSRSVNS 60
Query: 194 VLLFTILNPIYSITTDVLYTICNPCGPVQRIVIFRKNGVQAMVEFDSVQSAQRAKASLNG 253
VLLFTILNPIYSITTDVLYTICNPCGPVQRIVIFRKNGVQAMVEFDSVQSAQRAKASLNG
Sbjct: 61 VLLFTILNPIYSITTDVLYTICNPCGPVQRIVIFRKNGVQAMVEFDSVQSAQRAKASLNG 120
Query: 254 ADIYSGCCTLKIEYAKPTRLNVFKNDQDTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDH 313
ADIYSGCCTLKIEYAKPTRLNVFKNDQDTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDH
Sbjct: 121 ADIYSGCCTLKIEYAKPTRLNVFKNDQDTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDH 180
Query: 314 PAEYGGPHGGYHSHYHDEGYGPPPPHYEGRRMGPPVGGHRRGPSRYGPQYGHPPPPPPPP 373
PAEYGGPHGGYHSHYHDEGYGPPPPHYEGRRMGPPVGGHRRGPSRYGPQYGHPPPPPPPP
Sbjct: 181 PAEYGGPHGGYHSHYHDEGYGPPPPHYEGRRMGPPVGGHRRGPSRYGPQYGHPPPPPPPP 240
Query: 374 EYGPHADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVD 433
EYGPHADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVD
Sbjct: 241 EYGPHADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVD 300
Query: 434 RAITHLNNNFMFGQKLNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAK 493
RAITHLNNNFMFGQKLNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAK
Sbjct: 301 RAITHLNNNFMFGQKLNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAK 360
Query: 494 NRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPSSVKVFSGKSERSSSGLLEWESKS 553
NRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPSSVKVFSGKSERSSSGLLEWESKS
Sbjct: 361 NRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPSSVKVFSGKSERSSSGLLEWESKS 420
Query: 554 DALETLGFLNHYQMKNPNGPYPYTLKLCFSTAQHAS 589
DALETLGFLNHYQMKNPNGPYPYTLKLCFSTAQHAS
Sbjct: 421 DALETLGFLNHYQMKNPNGPYPYTLKLCFSTAQHAS 456
>gi|217416379 heterogeneous nuclear ribonucleoprotein L-like isoform
2 [Homo sapiens]
Length = 537
Score = 557 bits (1435), Expect = e-158
Identities = 297/520 (57%), Positives = 367/520 (70%), Gaps = 30/520 (5%)
Query: 71 GGGGGGGGGAGAAGGGGGGENYDDPHKTPASPVVHIRGLIDGVVEADLVEALQEFGPISY 130
GGG GGGGG + GG + HK SPVVH+RGL + VVEADLVEAL++FG I Y
Sbjct: 44 GGGDGGGGGRSFSQPEAGGSH----HKVSVSPVVHVRGLCESVVEADLVEALEKFGTICY 99
Query: 131 VVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQKISRPGDSDDSRS 190
V++MP KRQALVEFE++ A V +AAD +YIAG AF NYSTS++I+RPG++DD
Sbjct: 100 VMMMPFKRQALVEFENIDSAKECVTFAADEPVYIAGQQAFFNYSTSKRITRPGNTDDPSG 159
Query: 191 VNSVLLFTILNPIYSITTDVLYTICNPCGPVQRIVIFRKNGVQAMVEFDSVQSAQRAKAS 250
N VLL +I NP+Y IT DVLYT+CNP G VQRIVIF++NG+QAMVEF+SV AQ+AKA+
Sbjct: 160 GNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAA 219
Query: 251 LNGADIYSGCCTLKIEYAKPTRLNVFKNDQDTWDYTNPNLSGQGDPGSNPNKRQRQPPLL 310
LNGADIY+GCCTLKIEYA+PTRLNV +ND D+WDYT P L G+ D G RQRQ +L
Sbjct: 220 LNGADIYAGCCTLKIEYARPTRLNVIRNDNDSWDYTKPYL-GRRDRGKG---RQRQ-AIL 274
Query: 311 GDHPAEYGGPHGGYHSHYHDEGYGPPPPHYEGRRMGPPVGGHRRGPSRYGPQYGHPPPPP 370
G+HP+ + H GY SH GP P RMG SR P+ P P
Sbjct: 275 GEHPSSF--RHDGYGSH------GPLLPLPSRYRMG----------SRDTPELVAYPLPQ 316
Query: 371 PPPEY--GPHADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMAD 428
Y G + V+MV GL Q KMNC RVFN+FCLYGN+EKVKFMK+ PG A+VEM D
Sbjct: 317 ASSSYMHGGNPSGSVVMVSGLHQLKMNCSRVFNLFCLYGNIEKVKFMKTIPGTALVEMGD 376
Query: 429 GYAVDRAITHLNNNFMFGQKLNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTP 488
YAV+RA+THLNN +FG++LNVCVSKQ +++P Q + LEDG+ SYKDF+ S+NNRF++
Sbjct: 377 EYAVERAVTHLNNVKLFGKRLNVCVSKQHSVVPSQIFELEDGTSSYKDFAMSKNNRFTSA 436
Query: 489 EQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPSSVKVFSGK-SERSSSGLL 547
QA+KN IQ PS VLH++N PL VTEE F ++C++ V KVF K S ++ SGLL
Sbjct: 437 GQASKNIIQPPSCVLHYYNVPLCVTEETFTKLCNDHEVLTFIKYKVFDAKPSAKTLSGLL 496
Query: 548 EWESKSDALETLGFLNHYQMKNPNGPYPYTLKLCFSTAQH 587
EWE K+DA+E L LNHYQ++ PNG PYTLKLCFST+ H
Sbjct: 497 EWECKTDAVEALTALNHYQIRVPNGSNPYTLKLCFSTSSH 536
>gi|20149709 heterogeneous nuclear ribonucleoprotein L-like isoform
1 [Homo sapiens]
Length = 542
Score = 557 bits (1435), Expect = e-158
Identities = 297/520 (57%), Positives = 367/520 (70%), Gaps = 30/520 (5%)
Query: 71 GGGGGGGGGAGAAGGGGGGENYDDPHKTPASPVVHIRGLIDGVVEADLVEALQEFGPISY 130
GGG GGGGG + GG + HK SPVVH+RGL + VVEADLVEAL++FG I Y
Sbjct: 49 GGGDGGGGGRSFSQPEAGGSH----HKVSVSPVVHVRGLCESVVEADLVEALEKFGTICY 104
Query: 131 VVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQKISRPGDSDDSRS 190
V++MP KRQALVEFE++ A V +AAD +YIAG AF NYSTS++I+RPG++DD
Sbjct: 105 VMMMPFKRQALVEFENIDSAKECVTFAADEPVYIAGQQAFFNYSTSKRITRPGNTDDPSG 164
Query: 191 VNSVLLFTILNPIYSITTDVLYTICNPCGPVQRIVIFRKNGVQAMVEFDSVQSAQRAKAS 250
N VLL +I NP+Y IT DVLYT+CNP G VQRIVIF++NG+QAMVEF+SV AQ+AKA+
Sbjct: 165 GNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAA 224
Query: 251 LNGADIYSGCCTLKIEYAKPTRLNVFKNDQDTWDYTNPNLSGQGDPGSNPNKRQRQPPLL 310
LNGADIY+GCCTLKIEYA+PTRLNV +ND D+WDYT P L G+ D G RQRQ +L
Sbjct: 225 LNGADIYAGCCTLKIEYARPTRLNVIRNDNDSWDYTKPYL-GRRDRGKG---RQRQ-AIL 279
Query: 311 GDHPAEYGGPHGGYHSHYHDEGYGPPPPHYEGRRMGPPVGGHRRGPSRYGPQYGHPPPPP 370
G+HP+ + H GY SH GP P RMG SR P+ P P
Sbjct: 280 GEHPSSF--RHDGYGSH------GPLLPLPSRYRMG----------SRDTPELVAYPLPQ 321
Query: 371 PPPEY--GPHADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMAD 428
Y G + V+MV GL Q KMNC RVFN+FCLYGN+EKVKFMK+ PG A+VEM D
Sbjct: 322 ASSSYMHGGNPSGSVVMVSGLHQLKMNCSRVFNLFCLYGNIEKVKFMKTIPGTALVEMGD 381
Query: 429 GYAVDRAITHLNNNFMFGQKLNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTP 488
YAV+RA+THLNN +FG++LNVCVSKQ +++P Q + LEDG+ SYKDF+ S+NNRF++
Sbjct: 382 EYAVERAVTHLNNVKLFGKRLNVCVSKQHSVVPSQIFELEDGTSSYKDFAMSKNNRFTSA 441
Query: 489 EQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPSSVKVFSGK-SERSSSGLL 547
QA+KN IQ PS VLH++N PL VTEE F ++C++ V KVF K S ++ SGLL
Sbjct: 442 GQASKNIIQPPSCVLHYYNVPLCVTEETFTKLCNDHEVLTFIKYKVFDAKPSAKTLSGLL 501
Query: 548 EWESKSDALETLGFLNHYQMKNPNGPYPYTLKLCFSTAQH 587
EWE K+DA+E L LNHYQ++ PNG PYTLKLCFST+ H
Sbjct: 502 EWECKTDAVEALTALNHYQIRVPNGSNPYTLKLCFSTSSH 541
>gi|4506243 polypyrimidine tract-binding protein 1 isoform a [Homo
sapiens]
Length = 557
Score = 162 bits (411), Expect = 6e-40
Identities = 146/533 (27%), Positives = 238/533 (44%), Gaps = 70/533 (13%)
Query: 80 AGAAGGGGGGENYDDPHKTPASP--VVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKK 137
+ +A G + + ++ P V+HIR L V E +++ FG ++ ++++ K
Sbjct: 35 SASAANGNDSKKFKGDSRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGK 94
Query: 138 RQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQKISRPGDSDDSR------SV 191
QA +E A VNY + G P ++ +S +++ + +R +V
Sbjct: 95 NQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAV 154
Query: 192 NS--------------------------VLLFTILNPIYSITTDVLYTICNPCGPVQRIV 225
NS VL + N Y +T DVL+ I + G V +I+
Sbjct: 155 NSVQSGNLALAASAAAVDAGMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKII 214
Query: 226 IFRKNG-VQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLNVFKNDQDTWD 284
F KN QA++++ SAQ AK SL+G +IY+ CCTL+I+++K T LNV N+ + D
Sbjct: 215 TFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRD 274
Query: 285 YTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPPHYEGRR 344
YT P+L GD QP L A +G P G S G G PP +
Sbjct: 275 YTRPDLP-SGD---------SQPSLDQTMAAAFGAP--GIISASPYAGAGFPPTFAIPQA 322
Query: 345 MGPPVGGHRRGPSRYG--PQYGHPPPPPPPPEYG-------PHADSPVLMVYGLDQSKMN 395
G V P+ +G P G A + VL+V L+ ++
Sbjct: 323 AGLSV------PNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGNSVLLVSNLNPERVT 376
Query: 396 CDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKLNVCVSK 455
+F +F +YG+V++VK + +K A+V+MADG A++HLN + + G+ + + +SK
Sbjct: 377 PQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 436
Query: 456 -QPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTE 514
Q +P + G ED + KD+ S +RF P I PS LH N P V+E
Sbjct: 437 HQNVQLPRE--GQEDQGLT-KDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSE 493
Query: 515 ENFFEICDELGVKRPSSVKVFSGKSERSSSGLLEWESKSDALETLGFLNHYQM 567
E+ + G VK F + L++ S +A++ L L+++ +
Sbjct: 494 EDLKVLFSSNG----GVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDL 542
Score = 30.8 bits (68), Expect = 3.6
Identities = 36/158 (22%), Positives = 65/158 (41%), Gaps = 29/158 (18%)
Query: 428 DGYAVDRAI-THLNNNFMFGQKLNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFS 486
DG D A+ T ++ +F + CV+ P IM S +G+ S K +SR+
Sbjct: 2 DGIVPDIAVGTKRGSDELF----STCVTNGPFIMSSNSASAANGNDSKKFKGDSRSAGV- 56
Query: 487 TPEQAAKNRIQHPSNVLHFFNAPLEVTEEN-------FFEICDELGVKRPSSVKVFSGKS 539
PS V+H P++VTE F ++ + L +K + +
Sbjct: 57 ------------PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTE 104
Query: 540 ERSSSGLLEWESKSDALE----TLGFLNHYQMKNPNGP 573
E +++ + + S + L + F NH ++K + P
Sbjct: 105 EAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDSSP 142
>gi|14165464 polypyrimidine tract-binding protein 1 isoform b [Homo
sapiens]
Length = 550
Score = 160 bits (404), Expect = 4e-39
Identities = 143/533 (26%), Positives = 236/533 (44%), Gaps = 77/533 (14%)
Query: 80 AGAAGGGGGGENYDDPHKTPASP--VVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKK 137
+ +A G + + ++ P V+HIR L V E +++ FG ++ ++++ K
Sbjct: 35 SASAANGNDSKKFKGDSRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGK 94
Query: 138 RQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQKISRPGDSDDSR------SV 191
QA +E A VNY + G P ++ +S +++ + +R +V
Sbjct: 95 NQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAV 154
Query: 192 NS--------------------------VLLFTILNPIYSITTDVLYTICNPCGPVQRIV 225
NS VL + N Y +T DVL+ I + G V +I+
Sbjct: 155 NSVQSGNLALAASAAAVDAGMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKII 214
Query: 226 IFRKNG-VQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLNVFKNDQDTWD 284
F KN QA++++ SAQ AK SL+G +IY+ CCTL+I+++K T LNV N+ + D
Sbjct: 215 TFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRD 274
Query: 285 YTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPPHYEGRR 344
YT P+L GD QP L A + P+ G G PP +
Sbjct: 275 YTRPDLP-SGD---------SQPSLDQTMAAAFASPYA---------GAGFPPTFAIPQA 315
Query: 345 MGPPVGGHRRGPSRYG--PQYGHPPPPPPPPEYG-------PHADSPVLMVYGLDQSKMN 395
G V P+ +G P G A + VL+V L+ ++
Sbjct: 316 AGLSV------PNVHGALAPLAIPSAAAAAAAAGRIAIPGLAGAGNSVLLVSNLNPERVT 369
Query: 396 CDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKLNVCVSK 455
+F +F +YG+V++VK + +K A+V+MADG A++HLN + + G+ + + +SK
Sbjct: 370 PQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 429
Query: 456 -QPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTE 514
Q +P + G ED + KD+ S +RF P I PS LH N P V+E
Sbjct: 430 HQNVQLPRE--GQEDQGLT-KDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSE 486
Query: 515 ENFFEICDELGVKRPSSVKVFSGKSERSSSGLLEWESKSDALETLGFLNHYQM 567
E+ + G VK F + L++ S +A++ L L+++ +
Sbjct: 487 EDLKVLFSSNG----GVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDL 535
Score = 30.8 bits (68), Expect = 3.6
Identities = 36/158 (22%), Positives = 65/158 (41%), Gaps = 29/158 (18%)
Query: 428 DGYAVDRAI-THLNNNFMFGQKLNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFS 486
DG D A+ T ++ +F + CV+ P IM S +G+ S K +SR+
Sbjct: 2 DGIVPDIAVGTKRGSDELF----STCVTNGPFIMSSNSASAANGNDSKKFKGDSRSAGV- 56
Query: 487 TPEQAAKNRIQHPSNVLHFFNAPLEVTEEN-------FFEICDELGVKRPSSVKVFSGKS 539
PS V+H P++VTE F ++ + L +K + +
Sbjct: 57 ------------PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTE 104
Query: 540 ERSSSGLLEWESKSDALE----TLGFLNHYQMKNPNGP 573
E +++ + + S + L + F NH ++K + P
Sbjct: 105 EAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDSSP 142
>gi|14165466 polypyrimidine tract-binding protein 1 isoform c [Homo
sapiens]
Length = 531
Score = 156 bits (395), Expect = 4e-38
Identities = 138/524 (26%), Positives = 227/524 (43%), Gaps = 78/524 (14%)
Query: 80 AGAAGGGGGGENYDDPHKTPASP--VVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKK 137
+ +A G + + ++ P V+HIR L V E +++ FG ++ ++++ K
Sbjct: 35 SASAANGNDSKKFKGDSRSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGK 94
Query: 138 RQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQKISRPGDSDDSR------SV 191
QA +E A VNY + G P ++ +S +++ + +R +V
Sbjct: 95 NQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDSSPNQARAQAALQAV 154
Query: 192 NS--------------------------VLLFTILNPIYSITTDVLYTICNPCGPVQRIV 225
NS VL + N Y +T DVL+ I + G V +I+
Sbjct: 155 NSVQSGNLALAASAAAVDAGMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKII 214
Query: 226 IFRKNG-VQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLNVFKNDQDTWD 284
F KN QA++++ SAQ AK SL+G +IY+ CCTL+I+++K T LNV N+ + D
Sbjct: 215 TFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRD 274
Query: 285 YTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPPHYEGRR 344
YT P+L GD S P+ Q G HG P
Sbjct: 275 YTRPDLP-SGD--SQPSLDQTMAAAFG---LSVPNVHGAL-----------APLAIPSAA 317
Query: 345 MGPPVGGHRRGPSRYGPQYGHPPPPPPPPEYGPHADSPVLMVYGLDQSKMNCDRVFNVFC 404
G P G A + VL+V L+ ++ +F +F
Sbjct: 318 AAAAAAGRIAIPGLAG------------------AGNSVLLVSNLNPERVTPQSLFILFG 359
Query: 405 LYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKLNVCVSK-QPAIMPGQ 463
+YG+V++VK + +K A+V+MADG A++HLN + + G+ + + +SK Q +P +
Sbjct: 360 VYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPRE 419
Query: 464 SYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDE 523
G ED + KD+ S +RF P I PS LH N P V+EE+ +
Sbjct: 420 --GQEDQGLT-KDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSS 476
Query: 524 LGVKRPSSVKVFSGKSERSSSGLLEWESKSDALETLGFLNHYQM 567
G VK F + L++ S +A++ L L+++ +
Sbjct: 477 NG----GVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDL 516
Score = 30.8 bits (68), Expect = 3.6
Identities = 36/158 (22%), Positives = 65/158 (41%), Gaps = 29/158 (18%)
Query: 428 DGYAVDRAI-THLNNNFMFGQKLNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFS 486
DG D A+ T ++ +F + CV+ P IM S +G+ S K +SR+
Sbjct: 2 DGIVPDIAVGTKRGSDELF----STCVTNGPFIMSSNSASAANGNDSKKFKGDSRSAGV- 56
Query: 487 TPEQAAKNRIQHPSNVLHFFNAPLEVTEEN-------FFEICDELGVKRPSSVKVFSGKS 539
PS V+H P++VTE F ++ + L +K + +
Sbjct: 57 ------------PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTE 104
Query: 540 ERSSSGLLEWESKSDALE----TLGFLNHYQMKNPNGP 573
E +++ + + S + L + F NH ++K + P
Sbjct: 105 EAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKTDSSP 142
>gi|38569466 ROD1 regulator of differentiation 1 [Homo sapiens]
Length = 552
Score = 153 bits (387), Expect = 4e-37
Identities = 134/506 (26%), Positives = 226/506 (44%), Gaps = 55/506 (10%)
Query: 97 KTPASP--VVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAV 154
+ P SP V+H+R + V EA+++ FG ++ ++++ K QA +E A V
Sbjct: 52 RPPCSPSRVLHLRKIPCDVTEAEIISLGLPFGKVTNLLMLKGKSQAFLEMASEEAAVTMV 111
Query: 155 NYAADNQIYIAGHPAFVNYSTSQKISRPGDSDDSRSV----------------------- 191
NY ++ P ++ YS +++ + +R+
Sbjct: 112 NYYTPITPHLRSQPVYIQYSNHRELKTDNLPNQARAQAALQAVSAVQSGSLALSGGPSNE 171
Query: 192 -------NSVLLFTILNPIYSITTDVLYTICNPCGPVQRIVIFRKNG-VQAMVEFDSVQS 243
+ VL I N Y +T +VL+ I + G V +I+ F KN QA++++ +
Sbjct: 172 GTVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVN 231
Query: 244 AQRAKASLNGADIYSGCCTLKIEYAKPTRLNVFKNDQDTWDYTNPNL-SGQGDPGSNPNK 302
A AK +L+G +IY+ CCTL+I+++K T LNV N+ + D+T +L +G G P
Sbjct: 232 AHYAKMALDGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSL---- 287
Query: 303 RQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPPHYEGRRMGPPVGGHRRGPSRYGPQ 362
+PP+ A +G P + G+ P + + P GP
Sbjct: 288 ---EPPMA----AAFGAPGIISSPYAGAAGFAPAIGFPQATGLSVPAVPGALGPLTITSS 340
Query: 363 YGHPPPPPPPPEYGPHADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAA 422
P P + VL+V L+ + +F +F +YG+V +VK M +K A
Sbjct: 341 AVTGRMAIPGASGIP--GNSVLLVTNLNPDLITPHGLFILFGVYGDVHRVKIMFNKKENA 398
Query: 423 MVEMADGYAVDRAITHLNNNFMFGQKLNVCVSKQPAI-MPGQSYGLEDGSCSYKDFSESR 481
+V+MAD A+ HL+ ++G+ L +SK A+ +P + G ED + KDFS S
Sbjct: 399 LVQMADANQAQLAMNHLSGQRLYGKVLRATLSKHQAVQLPRE--GQEDQGLT-KDFSNSP 455
Query: 482 NNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPSSVKVFSGKSER 541
+RF P I PS LH N P VT ++ + E G SVK F +
Sbjct: 456 LHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTVDDLKNLFIEAG----CSVKAFKFFQKD 511
Query: 542 SSSGLLEWESKSDALETLGFLNHYQM 567
L++ S +A++ L L+++ +
Sbjct: 512 RKMALIQLGSVEEAIQALIELHNHDL 537
Score = 30.4 bits (67), Expect = 4.8
Identities = 37/171 (21%), Positives = 69/171 (40%), Gaps = 25/171 (14%)
Query: 125 FGPISYVVVM-PKKRQALVEFEDVLGACNAVNYAADNQIY-------IAGHPAF------ 170
+G + V +M KK ALV+ D A A+N+ + ++Y ++ H A
Sbjct: 382 YGDVHRVKIMFNKKENALVQMADANQAQLAMNHLSGQRLYGKVLRATLSKHQAVQLPREG 441
Query: 171 ---------VNYSTSQKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCG-P 220
+ S + +PG + + N S+T D L + G
Sbjct: 442 QEDQGLTKDFSNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVTVDDLKNLFIEAGCS 501
Query: 221 VQRIVIFRKNGVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPT 271
V+ F+K+ A+++ SV+ A +A L+ D+ L++ ++K T
Sbjct: 502 VKAFKFFQKDRKMALIQLGSVEEAIQALIELHNHDLGEN-HHLRVSFSKST 551
>gi|10863997 polypyrimidine tract binding protein 2 [Homo sapiens]
Length = 531
Score = 105 bits (262), Expect = 1e-22
Identities = 70/248 (28%), Positives = 120/248 (48%), Gaps = 33/248 (13%)
Query: 86 GGGGENYDDPHKTPASP--VVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVE 143
G + + K +P V+HIR L V E +++ FG ++ ++++ K QA +E
Sbjct: 41 GNDSKKFKGEDKMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLE 100
Query: 144 FEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQKI------------------------ 179
A VNY + ++ P ++ YS +++
Sbjct: 101 LATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTAN 160
Query: 180 -----SRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQRIVIFRKNG-VQ 233
+ +S + + + VL I N Y +T DVL+ I + G V +I+ F KN Q
Sbjct: 161 TPLSGTTVSESAVTPAQSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQ 220
Query: 234 AMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLNVFKNDQDTWDYTNPNL-SG 292
A++++ +AQ+AK +L+G +IY+ CCTL+I+++K LNV N+ + DYT P+L SG
Sbjct: 221 ALLQYGDPVNAQQAKLALDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSG 280
Query: 293 QGDPGSNP 300
G P +P
Sbjct: 281 DGQPALDP 288
Score = 84.0 bits (206), Expect = 4e-16
Identities = 57/186 (30%), Positives = 97/186 (52%), Gaps = 9/186 (4%)
Query: 383 VLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNN 442
VL+V L++ + +F +F +YG+V++VK + +K +A+++MADG A+ HLN
Sbjct: 339 VLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQ 398
Query: 443 FMFGQKLNVCVSKQPAI-MPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSN 501
M+G+ + V +SK + +P + GL+D + KDF S +RF P I PS
Sbjct: 399 KMYGKIIRVTLSKHQTVQLPRE--GLDDQGLT-KDFGNSPLHRFKKPGSKNFQNIFPPSA 455
Query: 502 VLHFFNAPLEVTEENFFEICDELGVKRPSSVKVFSGKSERSSSGLLEWESKSDALETLGF 561
LH N P V EE+ + G +VK F + + LL+ + +A++ L
Sbjct: 456 TLHLSNIPPSVAEEDLRTLFANTG----GTVKAFKFFQDHKMA-LLQMATVEEAIQALID 510
Query: 562 LNHYQM 567
L++Y +
Sbjct: 511 LHNYNL 516
Score = 33.9 bits (76), Expect = 0.43
Identities = 33/122 (27%), Positives = 52/122 (42%), Gaps = 7/122 (5%)
Query: 181 RPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQRIVIFRKNGVQAMVEFDS 240
R G S N+VLL + LN +T L+T+ G VQR+ I A+++
Sbjct: 326 RVGMPGVSAGGNTVLLVSNLNE-EMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMAD 384
Query: 241 VQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLNVFKNDQD----TWDYTNPNLSGQGDP 296
+Q A LNG +Y +++ +K + + + D T D+ N L P
Sbjct: 385 GNQSQLAMNHLNGQKMYGK--IIRVTLSKHQTVQLPREGLDDQGLTKDFGNSPLHRFKKP 442
Query: 297 GS 298
GS
Sbjct: 443 GS 444
>gi|28558998 polypyrimidine tract-binding protein 1 isoform d [Homo
sapiens]
Length = 197
Score = 69.7 bits (169), Expect = 7e-12
Identities = 51/170 (30%), Positives = 87/170 (51%), Gaps = 8/170 (4%)
Query: 399 VFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKLNVCVSK-QP 457
+F +F +YG+V++VK + +K A+V+MADG A++HLN + + G+ + + +SK Q
Sbjct: 20 LFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQN 79
Query: 458 AIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENF 517
+P + G ED + KD+ S +RF P I PS LH N P V+EE+
Sbjct: 80 VQLPRE--GQEDQGLT-KDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDL 136
Query: 518 FEICDELGVKRPSSVKVFSGKSERSSSGLLEWESKSDALETLGFLNHYQM 567
+ G VK F + L++ S +A++ L L+++ +
Sbjct: 137 KVLFSSNG----GVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDL 182
Score = 31.6 bits (70), Expect = 2.1
Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 6/97 (6%)
Query: 206 ITTDVLYTICNPCGPVQRIVIFRKNGVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKI 265
+T L+ + G VQR+ I A+V+ AQ A + LNG ++ ++I
Sbjct: 15 VTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGK--PIRI 72
Query: 266 EYAKPTRLNVFKNDQD----TWDYTNPNLSGQGDPGS 298
+K + + + Q+ T DY N L PGS
Sbjct: 73 TLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGS 109
>gi|109452587 family with sequence similarity 98, member B isoform 1
[Homo sapiens]
Length = 433
Score = 60.5 bits (145), Expect = 4e-09
Identities = 34/70 (48%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 20 QQPDEQRRRSGAMVKMAAAGGGGGGGRYYGGGSEGGRAPKRLKTDNAGDQHGGGGGGGGG 79
+ P Q+R+ G + GGGGGGGR GGG GGR G GGGGGGGGG
Sbjct: 321 EMPPWQKRQEGGGGRGGWGGGGGGGGRG-GGGGGGGRGG----WGGGGGGWGGGGGGGGG 375
Query: 80 AGAAGGGGGG 89
G GGGG G
Sbjct: 376 WGGGGGGGRG 385
Score = 54.3 bits (129), Expect = 3e-07
Identities = 30/67 (44%), Positives = 33/67 (49%), Gaps = 13/67 (19%)
Query: 39 GGGGGGGRYYGGGSEGGRAPKRLKTDNAGDQHGGG-------------GGGGGGAGAAGG 85
GGGGGGG +GGG GGR + + D G GG GGGGGG G GG
Sbjct: 367 GGGGGGGGGWGGGGGGGRGGFQGRGDYGGRGGYGGRGGYGGRGYGDPYGGGGGGGGGGGG 426
Query: 86 GGGGENY 92
GGG Y
Sbjct: 427 GGGYRRY 433
>gi|4502565 calpain, small subunit 1 [Homo sapiens]
Length = 268
Score = 55.5 bits (132), Expect = 1e-07
Identities = 30/57 (52%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 32 MVKMAAAGGGGGGGRYYGGGSEGGRAPKRLKTDNAGDQHGGGGGGGGGAGAAGGGGG 88
+V GGGGGGG GGG GG L +G GGGGGGGGG G GGGGG
Sbjct: 3 LVNSFLKGGGGGGG---GGGGLGGGLGNVLGGLISGAGGGGGGGGGGGGGGGGGGGG 56
Score = 42.4 bits (98), Expect = 0.001
Identities = 23/53 (43%), Positives = 26/53 (49%)
Query: 31 AMVKMAAAGGGGGGGRYYGGGSEGGRAPKRLKTDNAGDQHGGGGGGGGGAGAA 83
+ +K GGGGGGG G G+ G G GGGGGGGGG G A
Sbjct: 6 SFLKGGGGGGGGGGGLGGGLGNVLGGLISGAGGGGGGGGGGGGGGGGGGGGTA 58
Score = 39.7 bits (91), Expect = 0.008
Identities = 25/57 (43%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 35 MAAAGGGGGGGRYYGGGSE---GGRAPKRLKTDNAGDQHGGGGGGGGGAGAAGGGGG 88
+ GGGGGGG GGG GG G GGGGGGGGG A GG
Sbjct: 8 LKGGGGGGGGGGGLGGGLGNVLGGLISGAGGGGGGGGGGGGGGGGGGGGTAMRILGG 64
Score = 30.4 bits (67), Expect = 4.8
Identities = 15/32 (46%), Positives = 17/32 (53%)
Query: 30 GAMVKMAAAGGGGGGGRYYGGGSEGGRAPKRL 61
G + GGGGGGG GGG GG A + L
Sbjct: 31 GLISGAGGGGGGGGGGGGGGGGGGGGTAMRIL 62
>gi|51599151 calpain, small subunit 1 [Homo sapiens]
Length = 268
Score = 55.5 bits (132), Expect = 1e-07
Identities = 30/57 (52%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 32 MVKMAAAGGGGGGGRYYGGGSEGGRAPKRLKTDNAGDQHGGGGGGGGGAGAAGGGGG 88
+V GGGGGGG GGG GG L +G GGGGGGGGG G GGGGG
Sbjct: 3 LVNSFLKGGGGGGG---GGGGLGGGLGNVLGGLISGAGGGGGGGGGGGGGGGGGGGG 56
Score = 42.4 bits (98), Expect = 0.001
Identities = 23/53 (43%), Positives = 26/53 (49%)
Query: 31 AMVKMAAAGGGGGGGRYYGGGSEGGRAPKRLKTDNAGDQHGGGGGGGGGAGAA 83
+ +K GGGGGGG G G+ G G GGGGGGGGG G A
Sbjct: 6 SFLKGGGGGGGGGGGLGGGLGNVLGGLISGAGGGGGGGGGGGGGGGGGGGGTA 58
Score = 39.7 bits (91), Expect = 0.008
Identities = 25/57 (43%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 35 MAAAGGGGGGGRYYGGGSE---GGRAPKRLKTDNAGDQHGGGGGGGGGAGAAGGGGG 88
+ GGGGGGG GGG GG G GGGGGGGGG A GG
Sbjct: 8 LKGGGGGGGGGGGLGGGLGNVLGGLISGAGGGGGGGGGGGGGGGGGGGGTAMRILGG 64
Score = 30.4 bits (67), Expect = 4.8
Identities = 15/32 (46%), Positives = 17/32 (53%)
Query: 30 GAMVKMAAAGGGGGGGRYYGGGSEGGRAPKRL 61
G + GGGGGGG GGG GG A + L
Sbjct: 31 GLISGAGGGGGGGGGGGGGGGGGGGGTAMRIL 62
>gi|4885597 sine oculis homeobox homolog 3 [Homo sapiens]
Length = 332
Score = 55.1 bits (131), Expect = 2e-07
Identities = 41/123 (33%), Positives = 56/123 (45%), Gaps = 23/123 (18%)
Query: 33 VKMAAAGGGGGGGRYYGGGSEGGRAPKRLKTDNAGDQHGGGGGGGGGAGAAGGGGGGENY 92
+ +A++GGG G G GGG+ GG GG G GGGGAG AGGGGGG +
Sbjct: 27 ILLASSGGGNGAGG--GGGAGGGSG-------------GGNGAGGGGAGGAGGGGGGGSR 71
Query: 93 DDPHKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACN 152
P + + + + V A + E L+E G I + + L GAC
Sbjct: 72 APPEELSMFQLPTLNFSPEQV--ASVCETLEETGDIE------RLGRFLWSLPVAPGACE 123
Query: 153 AVN 155
A+N
Sbjct: 124 AIN 126
>gi|195972866 keratin 10 [Homo sapiens]
Length = 584
Score = 54.3 bits (129), Expect = 3e-07
Identities = 25/56 (44%), Positives = 31/56 (55%)
Query: 37 AAGGGGGGGRYYGGGSEGGRAPKRLKTDNAGDQHGGGGGGGGGAGAAGGGGGGENY 92
++GGGG GG +GGG GG + G HGG GGG G G++GGG G Y
Sbjct: 458 SSGGGGRGGGSFGGGYGGGSSGGGSSGGGHGGGHGGSSGGGYGGGSSGGGSSGGGY 513
Score = 53.5 bits (127), Expect = 5e-07
Identities = 30/77 (38%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 29 SGAMVKMAAAGGGGGGGRYYGGGSEGGRAPKRLKTDNAGDQHGGGGGGGGGA----GAAG 84
SG ++GGG GG Y GG S GG G GGGGG GGG+ ++G
Sbjct: 495 SGGGYGGGSSGGGSSGGGYGGGSSSGGHGGSSSGGYGGGSSGGGGGGYGGGSSGGGSSSG 554
Query: 85 GGGGGENYDDPHKTPAS 101
GG GG + HK+ +S
Sbjct: 555 GGYGGGSSSGGHKSSSS 571
Score = 51.2 bits (121), Expect = 3e-06
Identities = 32/82 (39%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 19 RQQPDEQRRRSGAMVKMAAAGGGGGGGRY---YGGGSEGGRAPKRLKTDNAGDQHGGG-G 74
R + + Q RS + ++ GGG GGG + YGGGS GG + G GGG G
Sbjct: 441 RLENEIQTYRSLLEGEGSSGGGGRGGGSFGGGYGGGSSGGGSSGGGHGGGHGGSSGGGYG 500
Query: 75 GGGGGAGAAGGGGGGENYDDPH 96
GG G G++GGG GG + H
Sbjct: 501 GGSSGGGSSGGGYGGGSSSGGH 522
Score = 50.1 bits (118), Expect = 6e-06
Identities = 23/50 (46%), Positives = 28/50 (56%)
Query: 40 GGGGGGRYYGGGSEGGRAPKRLKTDNAGDQHGGGGGGGGGAGAAGGGGGG 89
GG GG Y GG S GG + ++ HGG GG G G++GGGGGG
Sbjct: 492 GGSSGGGYGGGSSGGGSSGGGYGGGSSSGGHGGSSSGGYGGGSSGGGGGG 541
Score = 46.6 bits (109), Expect = 6e-05
Identities = 23/52 (44%), Positives = 26/52 (50%)
Query: 37 AAGGGGGGGRYYGGGSEGGRAPKRLKTDNAGDQHGGGGGGGGGAGAAGGGGG 88
++GGG GGG GG S GG + G GG GGG G G G GGG
Sbjct: 494 SSGGGYGGGSSGGGSSGGGYGGGSSSGGHGGSSSGGYGGGSSGGGGGGYGGG 545
Score = 45.8 bits (107), Expect = 1e-04
Identities = 23/54 (42%), Positives = 26/54 (48%)
Query: 38 AGGGGGGGRYYGGGSEGGRAPKRLKTDNAGDQHGGGGGGGGGAGAAGGGGGGEN 91
+ GGG GG GGGS GG + G GG GGG G GG GGG +
Sbjct: 494 SSGGGYGGGSSGGGSSGGGYGGGSSSGGHGGSSSGGYGGGSSGGGGGGYGGGSS 547
Score = 45.1 bits (105), Expect = 2e-04
Identities = 22/53 (41%), Positives = 25/53 (47%)
Query: 39 GGGGGGGRYYGGGSEGGRAPKRLKTDNAGDQHGGGGGGGGGAGAAGGGGGGEN 91
GGG GG GGG GG G GG GGG G G++ GG GG +
Sbjct: 474 GGGSSGGGSSGGGHGGGHGGSSGGGYGGGSSGGGSSGGGYGGGSSSGGHGGSS 526
Score = 41.2 bits (95), Expect = 0.003
Identities = 32/85 (37%), Positives = 39/85 (45%), Gaps = 11/85 (12%)
Query: 41 GGGGGRYYGGGSEGGRAPKRLKTDNAGDQHGGGGGGGGGAGAAGGGGGGENYDDPHKTPA 100
GG G +GGGS GG + G GGGG GGGG G GGG G D
Sbjct: 95 GGSYGGSFGGGSFGGGS-------FGGGSFGGGGFGGGGFGGGFGGGFG---GDGGLLSG 144
Query: 101 SPVVHIRGLIDGVVE-ADLVEALQE 124
+ V ++ L D + D V AL+E
Sbjct: 145 NEKVTMQNLNDRLASYLDKVRALEE 169
Score = 41.2 bits (95), Expect = 0.003
Identities = 23/61 (37%), Positives = 25/61 (40%), Gaps = 11/61 (18%)
Query: 39 GGGGGGGRYYGGGSEGGRAPKRLKTDNAGDQHGGGGGGGGGAGAAGGGGGGENYDDPHKT 98
G GGGG YGGGS GG G GGG GGG +G G + K
Sbjct: 533 GSSGGGGGGYGGGSSGG-----------GSSSGGGYGGGSSSGGHKSSSSGSVGESSSKG 581
Query: 99 P 99
P
Sbjct: 582 P 582
Score = 38.1 bits (87), Expect = 0.023
Identities = 25/69 (36%), Positives = 29/69 (42%), Gaps = 8/69 (11%)
Query: 29 SGAMVKMAAAGGG---GGGGRY-----YGGGSEGGRAPKRLKTDNAGDQHGGGGGGGGGA 80
SG ++GGG G G Y +GGGS G + G GGG GGG
Sbjct: 53 SGGSFSRGSSGGGCFGGSSGGYGGLGGFGGGSFRGSYGSSSFGGSYGGSFGGGSFGGGSF 112
Query: 81 GAAGGGGGG 89
G GGGG
Sbjct: 113 GGGSFGGGG 121
Score = 37.7 bits (86), Expect = 0.030
Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 8/67 (11%)
Query: 26 RRRSGAMVKMAAAGGGGGGGRYYGGGSEGGRAPKRLKTDNAGDQHGGG---GGGGGGAGA 82
R S + +GGGGG GGG GG L+ ++ GGG GG GG+ +
Sbjct: 4 RYSSSKHYSSSRSGGGGG-----GGGCGGGGGVSSLRISSSKGSLGGGFSSGGFSGGSFS 58
Query: 83 AGGGGGG 89
G GGG
Sbjct: 59 RGSSGGG 65
Score = 37.4 bits (85), Expect = 0.039
Identities = 24/65 (36%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Query: 26 RRRSGAMVKMAAAGGGGGGGRYYGGGSEGGRAPKRLKTDNAGDQHGGGGGGGG-GAGAAG 84
R SG ++GG GG G + GG G G GG GGG G G+ G
Sbjct: 59 RGSSGGGCFGGSSGGYGGLGGFGGGSFRGSYGSSSFGGSYGGSFGGGSFGGGSFGGGSFG 118
Query: 85 GGGGG 89
GGG G
Sbjct: 119 GGGFG 123
Score = 36.6 bits (83), Expect = 0.066
Identities = 22/53 (41%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 40 GGGGGGRY---YGGGSEGGRAPKRLKTDNAGDQHGGGGGGGGGAGAAGGGGGG 89
GG GGG + YG S GG + G GGG GGG GG GGG
Sbjct: 78 GGFGGGSFRGSYGSSSFGGSYGGSFGGGSFGGGSFGGGSFGGGGFGGGGFGGG 130
Score = 36.2 bits (82), Expect = 0.087
Identities = 26/78 (33%), Positives = 30/78 (38%), Gaps = 16/78 (20%)
Query: 28 RSGAMVKMAAAGGGGG-------------GGRYYGGGSEGGRAPKRLKTDNAGDQHGGGG 74
RSG GGGGG GG + GG GG + + G GG
Sbjct: 15 RSGGGGGGGGCGGGGGVSSLRISSSKGSLGGGFSSGGFSGGSFSRG---SSGGGCFGGSS 71
Query: 75 GGGGGAGAAGGGGGGENY 92
GG GG G GGG +Y
Sbjct: 72 GGYGGLGGFGGGSFRGSY 89
Score = 34.7 bits (78), Expect = 0.25
Identities = 20/50 (40%), Positives = 21/50 (42%), Gaps = 17/50 (34%)
Query: 39 GGGGGGGRYYGGGSEGGRAPKRLKTDNAGDQHGGGGGGGGGAGAAGGGGG 88
GGG GG +GGG GGGG GGG G GG GG
Sbjct: 108 GGGSFGGGSFGGGG-----------------FGGGGFGGGFGGGFGGDGG 140
>gi|55956899 keratin 9 [Homo sapiens]
Length = 623
Score = 53.5 bits (127), Expect = 5e-07
Identities = 27/54 (50%), Positives = 32/54 (59%), Gaps = 8/54 (14%)
Query: 38 AGGGGGGGRYYGGGSEGGRAPKRLKTDNAGDQHGGGGGG--GGGAGAAGGGGGG 89
+G GGG G YGGGS GG + +G H GG GG GGG+G+ GG GGG
Sbjct: 524 SGSGGGSGGGYGGGSGGGHS------GGSGGGHSGGSGGNYGGGSGSGGGSGGG 571
Score = 53.1 bits (126), Expect = 7e-07
Identities = 26/62 (41%), Positives = 30/62 (48%)
Query: 28 RSGAMVKMAAAGGGGGGGRYYGGGSEGGRAPKRLKTDNAGDQHGGGGGGGGGAGAAGGGG 87
R G+ GG GG Y GGGS GG +G +GGG G GGG+G GGG
Sbjct: 478 RGGSGGSYGRGSRGGSGGSYGGGGSGGGYGGGSGSRGGSGGSYGGGSGSGGGSGGGYGGG 537
Query: 88 GG 89
G
Sbjct: 538 SG 539
Score = 52.8 bits (125), Expect = 9e-07
Identities = 27/54 (50%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 39 GGGGGGGRYYGG-GSEGGRAPKRLKTDNAGDQHGGGGGGGGGAGAAGGGGGGEN 91
GGGG GG Y GG GS GG +G GGG GGG G G +GG GGG +
Sbjct: 498 GGGGSGGGYGGGSGSRGGSGGSYGGGSGSGGGSGGGYGGGSGGGHSGGSGGGHS 551
Score = 52.4 bits (124), Expect = 1e-06
Identities = 26/60 (43%), Positives = 31/60 (51%)
Query: 30 GAMVKMAAAGGGGGGGRYYGGGSEGGRAPKRLKTDNAGDQHGGGGGGGGGAGAAGGGGGG 89
G ++ GGGG G YGGGS GG + L G G GG GGG ++GG GGG
Sbjct: 55 GGSSRVCGRGGGGSFGYSYGGGSGGGFSASSLGGGFGGGSRGFGGASGGGYSSSGGFGGG 114
Score = 50.4 bits (119), Expect = 4e-06
Identities = 28/61 (45%), Positives = 36/61 (59%), Gaps = 7/61 (11%)
Query: 34 KMAAAGGGGGGGRY-----YGGGSEGGRAPKRLKTDNAGDQHGGGGGGGGGAGAAGGGGG 88
+ +++GGGGGGGR+ YGGGS R R + G +GGG GGG A + GGG G
Sbjct: 34 RFSSSGGGGGGGRFSSSSGYGGGS--SRVCGRGGGGSFGYSYGGGSGGGFSASSLGGGFG 91
Query: 89 G 89
G
Sbjct: 92 G 92
Score = 47.4 bits (111), Expect = 4e-05
Identities = 28/69 (40%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 26 RRRSGAMVKMAAAGGGGGGGRYYGGGSEGGRAPKRLKTDNAGDQHGGGGGGG--GGAGAA 83
R SG +GGG GGG GGS G +G +GGG GGG GG+G
Sbjct: 490 RGGSGGSYGGGGSGGGYGGGSGSRGGSGGSYGGGSGSGGGSGGGYGGGSGGGHSGGSGGG 549
Query: 84 GGGGGGENY 92
GG G NY
Sbjct: 550 HSGGSGGNY 558
Score = 46.6 bits (109), Expect = 6e-05
Identities = 25/53 (47%), Positives = 29/53 (54%), Gaps = 13/53 (24%)
Query: 39 GGGGGGGRYYGGGSEGGRAPKRLKTDNAGDQHGGGGGG---GGGAGAAGGGGG 88
GG GG G YG GS GG +G +GGGG G GGG+G+ GG GG
Sbjct: 476 GGRGGSGGSYGRGSRGG----------SGGSYGGGGSGGGYGGGSGSRGGSGG 518
Score = 46.6 bits (109), Expect = 6e-05
Identities = 23/50 (46%), Positives = 27/50 (54%)
Query: 38 AGGGGGGGRYYGGGSEGGRAPKRLKTDNAGDQHGGGGGGGGGAGAAGGGG 87
+GG GGG GGGS GG +G HGGG G GG +G + GGG
Sbjct: 554 SGGNYGGGSGSGGGSGGGYGGGSGSRGGSGGSHGGGSGFGGESGGSYGGG 603
Score = 46.2 bits (108), Expect = 8e-05
Identities = 29/67 (43%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 29 SGAMVKMAAAGGG-GGGGRYYGGGSEGGRAPKRLKTDNAGDQHGGGGGGG-----GGAGA 82
SG ++ GGG GGG R +GG S GG + G GGG GGG GG G
Sbjct: 77 SGGGFSASSLGGGFGGGSRGFGGASGGGYSSSGGFGGGFGGGSGGGFGGGYGSGFGGFGG 136
Query: 83 AGGGGGG 89
GGG GG
Sbjct: 137 FGGGAGG 143
Score = 46.2 bits (108), Expect = 8e-05
Identities = 24/61 (39%), Positives = 29/61 (47%)
Query: 36 AAAGGGGGGGRYYGGGSEGGRAPKRLKTDNAGDQHGGGGGGGGGAGAAGGGGGGENYDDP 95
+ +GGG GGG G GS GG G + GG GGG A +GGG GG +
Sbjct: 562 SGSGGGSGGGYGGGSGSRGGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGKSS 621
Query: 96 H 96
H
Sbjct: 622 H 622
Score = 45.8 bits (107), Expect = 1e-04
Identities = 25/52 (48%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 39 GGGGGGGRYYGGGSEGGRAPKRLKTDNAGDQHGGGGGG--GGGAGAAGGGGG 88
GGG GGG + GGS GG + G GGG GG GGG+G+ GG GG
Sbjct: 535 GGGSGGG--HSGGSGGGHSGGSGGNYGGGSGSGGGSGGGYGGGSGSRGGSGG 584
Score = 44.3 bits (103), Expect = 3e-04
Identities = 24/54 (44%), Positives = 29/54 (53%), Gaps = 10/54 (18%)
Query: 38 AGGG--GGGGRYYGGGSEGGRAPKRLKTDNAGDQHGGGGGGGGGAGAAGGGGGG 89
+GGG GG G YGGGS G +G +GGG G GG+G + GGG G
Sbjct: 546 SGGGHSGGSGGNYGGGSGSG--------GGSGGGYGGGSGSRGGSGGSHGGGSG 591
Score = 39.3 bits (90), Expect = 0.010
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 9/57 (15%)
Query: 35 MAAAGGGGGGGRYYGGGSEGGRAPKRLKTDNAGDQHGGGGGGGGGAGAAGGGGGGEN 91
++ +GGGGGGG GG +++ + GGGGGGG ++ G GGG +
Sbjct: 11 LSRSGGGGGGGLGSGGS---------IRSSYSRFSSSGGGGGGGRFSSSSGYGGGSS 58
Score = 33.1 bits (74), Expect = 0.73
Identities = 19/63 (30%), Positives = 24/63 (38%), Gaps = 14/63 (22%)
Query: 30 GAMVKMAAAGGGGGGGRYYGGGSEGGRAPKRLKTDNAGDQHGGGGGGGGGAGAAGGGGGG 89
G +GG GGG +GG S G +GGG G G GGG G
Sbjct: 574 GGSGSRGGSGGSHGGGSGFGGES--------------GGSYGGGEEASGSGGGYGGGSGK 619
Query: 90 ENY 92
++
Sbjct: 620 SSH 622
>gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo
sapiens]
Length = 378
Score = 53.1 bits (126), Expect = 7e-07
Identities = 32/83 (38%), Positives = 38/83 (45%), Gaps = 15/83 (18%)
Query: 11 KRRRRLEQRQQPDEQRRRSGAMVKMAAAGG--GGGGGRYYGGGSEGGRAPKRLKTDNAGD 68
K+ ++ Q QR R G GG GGGGG + GG+ GGR
Sbjct: 199 KKALSKQEMQSAGSQRGRGGGSGNFMGRGGNFGGGGGNFGRGGNFGGRG----------- 247
Query: 69 QHGGGGGGGGGAGAAGGGGGGEN 91
G GGGGGG G+ GGG GG N
Sbjct: 248 --GYGGGGGGSRGSYGGGDGGYN 268
Score = 44.3 bits (103), Expect = 3e-04
Identities = 27/76 (35%), Positives = 32/76 (42%), Gaps = 9/76 (11%)
Query: 28 RSGAMVKMAAAGGGGGGGR---------YYGGGSEGGRAPKRLKTDNAGDQHGGGGGGGG 78
R G GGGGGG R Y G G +GG + G GGG G G
Sbjct: 239 RGGNFGGRGGYGGGGGGSRGSYGGGDGGYNGFGGDGGNYGGGPGYSSRGGYGGGGPGYGN 298
Query: 79 GAGAAGGGGGGENYDD 94
G GGGGG + Y++
Sbjct: 299 QGGGYGGGGGYDGYNE 314
Score = 40.4 bits (93), Expect = 0.005
Identities = 30/72 (41%), Positives = 32/72 (44%), Gaps = 25/72 (34%)
Query: 39 GGGGGGGRYYGG------GSEGGRAPKRLKTDNAGDQHGGGGGGGG----------GAGA 82
G GG GG Y GG G GG P G+Q GG GGGGG G G
Sbjct: 269 GFGGDGGNYGGGPGYSSRGGYGGGGP------GYGNQGGGYGGGGGYDGYNEGGNFGGGN 322
Query: 83 AGGGGGGENYDD 94
GGGG NY+D
Sbjct: 323 YGGGG---NYND 331
Score = 35.8 bits (81), Expect = 0.11
Identities = 26/64 (40%), Positives = 30/64 (46%), Gaps = 26/64 (40%)
Query: 39 GGG--GGGGRY-------------YG---GGSEGGRAPKRLKTDNAGDQHGGGGGGGGGA 80
GGG GGGG Y YG GGS GGR+ +G +GGG G GGG+
Sbjct: 319 GGGNYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRS--------SGSPYGGGYGSGGGS 370
Query: 81 GAAG 84
G G
Sbjct: 371 GGYG 374
Score = 33.9 bits (76), Expect = 0.43
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 49 GGGSEGGRAPKRLKTDNAGDQHGGGGGGGGGAGAAGG-GGGGENY 92
G E +A + + +AG Q G GGG G G G GGGG N+
Sbjct: 193 GHNCEVKKALSKQEMQSAGSQRGRGGGSGNFMGRGGNFGGGGGNF 237
Score = 30.8 bits (68), Expect = 3.6
Identities = 25/82 (30%), Positives = 28/82 (34%), Gaps = 41/82 (50%)
Query: 39 GGGGGGGRYYGGGSEGGRAPKRLKTDNAGDQHGGGGGG---------------------- 76
GGG GGG Y G +EGG N G + GGGG
Sbjct: 300 GGGYGGGGGYDGYNEGG---------NFGGGNYGGGGNYNDFGNYSGQQQSNYGPMKGGS 350
Query: 77 ----------GGGAGAAGGGGG 88
GGG G+ GG GG
Sbjct: 351 FGGRSSGSPYGGGYGSGGGSGG 372
>gi|197209826 chromosome 2 open reading frame 21 isoform 1 [Homo
sapiens]
Length = 3258
Score = 52.8 bits (125), Expect = 9e-07
Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 15/109 (13%)
Query: 5 LLPRAEKRRRRLEQRQQPDEQRRRSGAMVKMAAAGGGGGGGRYYGGGSEGGRAPKRLKTD 64
++P EK R++ E ++ ++R S + G G +GG + G
Sbjct: 688 VVPCVEKNRKKSENKENETLEKRPSEGAFQFKGVSGSSTCG--FGGPAVSGAG------- 738
Query: 65 NAGDQHGGGGGGGGGAGAAGGGGGG------ENYDDPHKTPASPVVHIR 107
+ G + GGGG GGGG G GGGGGG +N + K ++PV + R
Sbjct: 739 DGGGEEGGGGDGGGGGGDGGGGGGGGGGPYEKNDKNQEKDESTPVSNHR 787
>gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo
sapiens]
Length = 305
Score = 52.8 bits (125), Expect = 9e-07
Identities = 31/63 (49%), Positives = 35/63 (55%), Gaps = 8/63 (12%)
Query: 38 AGGGGGGGRYYGGGSEG-----GRAPKRLKTDNAG--DQHGG-GGGGGGGAGAAGGGGGG 89
+GGGGGG R GG G GR L G + +GG GGGGGGG A GGGGGG
Sbjct: 181 SGGGGGGSRSSRGGRGGRGRGGGRDQNGLSKGGGGGYNSYGGYGGGGGGGYNAYGGGGGG 240
Query: 90 ENY 92
+Y
Sbjct: 241 SSY 243
Score = 43.1 bits (100), Expect = 7e-04
Identities = 27/67 (40%), Positives = 29/67 (43%), Gaps = 16/67 (23%)
Query: 38 AGGGGGGGRYYGGGSEG----GRAPKRLKTDNAGDQHGGGGGGGGGA------------G 81
A GGGGGG YGG G G + G GGGGGGGG+ G
Sbjct: 233 AYGGGGGGSSYGGSDYGNGFGGFGSYSQHQSSYGPMKSGGGGGGGGSSWGGRSNSGPYRG 292
Query: 82 AAGGGGG 88
GGGGG
Sbjct: 293 GYGGGGG 299
Score = 40.0 bits (92), Expect = 0.006
Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 12/49 (24%)
Query: 35 MAAAGGGGGGGRYYGGGSEGGRAPKRLKTDNAGDQHGGGGGGGGGAGAA 83
M + GGGGGGG +GG S N+G GG GGGGG G++
Sbjct: 268 MKSGGGGGGGGSSWGGRS------------NSGPYRGGYGGGGGYGGSS 304
Score = 39.7 bits (91), Expect = 0.008
Identities = 24/75 (32%), Positives = 29/75 (38%), Gaps = 24/75 (32%)
Query: 39 GGGGGGGRYYGGGSEGGRAPKRLKTDNAGDQHGGGGGG----------------GGGAGA 82
GGGGGG YGGG G + G +G G GG GGG G
Sbjct: 225 GGGGGGYNAYGGGGGG--------SSYGGSDYGNGFGGFGSYSQHQSSYGPMKSGGGGGG 276
Query: 83 AGGGGGGENYDDPHK 97
G GG + P++
Sbjct: 277 GGSSWGGRSNSGPYR 291
>gi|109255251 loricrin [Homo sapiens]
Length = 312
Score = 52.4 bits (124), Expect = 1e-06
Identities = 32/78 (41%), Positives = 37/78 (47%), Gaps = 8/78 (10%)
Query: 18 QRQQPDEQRRRSGAMVKMAAAGGGGGG------GRYYGGGSEGGRAPKRLKTDNAGDQHG 71
Q++QP Q VK + GGGGGG G + GGGS GG + G G
Sbjct: 4 QKKQPTPQPPVD--CVKTSGGGGGGGGSGGGGCGFFGGGGSGGGSSGSGCGYSGGGGYSG 61
Query: 72 GGGGGGGGAGAAGGGGGG 89
GG GGG G GGG GG
Sbjct: 62 GGCGGGSSGGGGGGGIGG 79
Score = 47.8 bits (112), Expect = 3e-05
Identities = 28/67 (41%), Positives = 33/67 (49%), Gaps = 8/67 (11%)
Query: 29 SGAMVKMAAAGGGGGGGRYYGGGSEGGRAPKRLKTDNAGDQHGGGGG----GGGGAGAAG 84
SG ++GGGGGGG GG GG +K G GGG G GGGG+G
Sbjct: 60 SGGGCGGGSSGGGGGGGIGGCGGGSGG----SVKYSGGGGSSGGGSGCFSSGGGGSGCFS 115
Query: 85 GGGGGEN 91
GGGG +
Sbjct: 116 SGGGGSS 122
Score = 44.3 bits (103), Expect = 3e-04
Identities = 26/71 (36%), Positives = 32/71 (45%), Gaps = 18/71 (25%)
Query: 36 AAAGGGG------GGGRYYGGGSEGGRAPKRLKTDNA------------GDQHGGGGGGG 77
++ GGGG GGG GGGS GG + + G GGGG GG
Sbjct: 178 SSGGGGGSVCGYSGGGSGCGGGSSGGSGSGYVSSQQVTQTSCAPQPSYGGGSSGGGGSGG 237
Query: 78 GGAGAAGGGGG 88
G ++GGGGG
Sbjct: 238 SGCFSSGGGGG 248
Score = 43.1 bits (100), Expect = 7e-04
Identities = 25/62 (40%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 38 AGGGGGGGRYYGGGSEGGRAPKRLKTDNAGDQHGGGGGGGGGAGAA-GGGGGGENYDDPH 96
+ GGGGG GGGS G G GGG GGGG G++ GG G G+ H
Sbjct: 242 SSGGGGGSSGCGGGSSG--IGSGCIISGGGSVCGGGSSGGGGGGSSVGGSGSGKGVPICH 299
Query: 97 KT 98
+T
Sbjct: 300 QT 301
Score = 41.6 bits (96), Expect = 0.002
Identities = 28/75 (37%), Positives = 32/75 (42%), Gaps = 22/75 (29%)
Query: 29 SGAMVKMAAAGG-----------GGGGGRYY---GGGSEGGRAPKRLKTDNAGDQHGGGG 74
SG VK + GG GGGG + GGGS GG + GGGG
Sbjct: 84 SGGSVKYSGGGGSSGGGSGCFSSGGGGSGCFSSGGGGSSGG--------GSGCFSSGGGG 135
Query: 75 GGGGGAGAAGGGGGG 89
GGG+G GGGG
Sbjct: 136 SSGGGSGCFSSGGGG 150
Score = 38.1 bits (87), Expect = 0.023
Identities = 25/64 (39%), Positives = 31/64 (48%), Gaps = 16/64 (25%)
Query: 37 AAGGGGGGGRY-----YGGGSEGGRAPKRLKTDNAGDQHGGGGGG------GGGAGAAGG 85
++GGGG G+ YGG S GG + +G GGGGG GGG+G GG
Sbjct: 145 SSGGGGFSGQAVQCQSYGGVSSGGSSG-----GGSGCFSSGGGGGSVCGYSGGGSGCGGG 199
Query: 86 GGGG 89
GG
Sbjct: 200 SSGG 203
Score = 37.7 bits (86), Expect = 0.030
Identities = 25/61 (40%), Positives = 29/61 (47%), Gaps = 11/61 (18%)
Query: 38 AGGGGGGGRYYGGGSEGGRAPKRLKTDNAGDQHGG-----GGGGGGGAG----AAGGGGG 88
+GGGG G GGGS GG + G GG GGGG G G ++GGGG
Sbjct: 54 SGGGGYSGGGCGGGSSGGGGGGGI--GGCGGGSGGSVKYSGGGGSSGGGSGCFSSGGGGS 111
Query: 89 G 89
G
Sbjct: 112 G 112
Score = 37.7 bits (86), Expect = 0.030
Identities = 18/54 (33%), Positives = 25/54 (46%)
Query: 36 AAAGGGGGGGRYYGGGSEGGRAPKRLKTDNAGDQHGGGGGGGGGAGAAGGGGGG 89
+ GG GGG GG + + ++ + G GG GGG + GGGGG
Sbjct: 131 SGGGGSSGGGSGCFSSGGGGFSGQAVQCQSYGGVSSGGSSGGGSGCFSSGGGGG 184
Score = 37.4 bits (85), Expect = 0.039
Identities = 23/75 (30%), Positives = 29/75 (38%), Gaps = 17/75 (22%)
Query: 48 YGGGSEGGRAPKRLKTDNAGDQHGGGGGGGG-----------------GAGAAGGGGGGE 90
YGGGS GG ++G G G GGG G G++GGGGGG
Sbjct: 225 YGGGSSGGGGSGGSGCFSSGGGGGSSGCGGGSSGIGSGCIISGGGSVCGGGSSGGGGGGS 284
Query: 91 NYDDPHKTPASPVVH 105
+ P+ H
Sbjct: 285 SVGGSGSGKGVPICH 299
Score = 35.8 bits (81), Expect = 0.11
Identities = 25/87 (28%), Positives = 34/87 (39%), Gaps = 30/87 (34%)
Query: 35 MAAAGGGG-------------------GGGRYYGGGSEGGRAPKRLKTDNAGD------- 68
+++ G G GGG GGGS GG + +
Sbjct: 164 VSSGGSSGGGSGCFSSGGGGGSVCGYSGGGSGCGGGSSGGSGSGYVSSQQVTQTSCAPQP 223
Query: 69 QHGGGGGGGGGAGAAG----GGGGGEN 91
+GGG GGGG+G +G GGGGG +
Sbjct: 224 SYGGGSSGGGGSGGSGCFSSGGGGGSS 250
>gi|49574532 glycogen synthase kinase 3 alpha [Homo sapiens]
Length = 483
Score = 51.6 bits (122), Expect = 2e-06
Identities = 27/74 (36%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 26 RRRSGAMVKMAAAGGGGGGGRYYG----GGSEGGRAPKRLKTDNAGDQHGGGGGGGGGAG 81
R R+ + + GGGGGGG GG+ GG+A G GGG GG G G
Sbjct: 16 RARTSSFAEPGGGGGGGGGGPGGSASGPGGTGGGKASVGAMGGGVGASSSGGGPGGSGGG 75
Query: 82 AAGGGGGGENYDDP 95
+GG G G ++ P
Sbjct: 76 GSGGPGAGTSFPPP 89
Score = 42.4 bits (98), Expect = 0.001
Identities = 22/48 (45%), Positives = 24/48 (50%)
Query: 43 GGGRYYGGGSEGGRAPKRLKTDNAGDQHGGGGGGGGGAGAAGGGGGGE 90
GGG GG GRA + G GGGGG GG A GG GGG+
Sbjct: 3 GGGPSGGGPGGSGRARTSSFAEPGGGGGGGGGGPGGSASGPGGTGGGK 50
Score = 37.4 bits (85), Expect = 0.039
Identities = 20/51 (39%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Query: 38 AGGGGGGGRYYGGGSEGGRAPKRLKTDNAGDQHGGGGGGGGGAGAAGGGGG 88
+GGG GG G G G G GGGG GG +G G GGG
Sbjct: 2 SGGGPSGG---GPGGSGRARTSSFAEPGGGGGGGGGGPGGSASGPGGTGGG 49
>gi|56699482 hypothetical protein LOC25940 [Homo sapiens]
Length = 518
Score = 50.8 bits (120), Expect = 3e-06
Identities = 28/79 (35%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
Query: 20 QQPDEQRRRSGAMVKMAAAGGGGGGGRYYGGGSEGGRAPKRLKTDNAGDQHGGGGGGGG- 78
+ P Q+R+ G + GGG GG + G GG + G HGG GGG G
Sbjct: 318 EMPPWQKRQDGPQQQTGGRGGGRGGYEHSSYGGRGGHEQGGGRGGRGGYDHGGRGGGRGN 377
Query: 79 ---GAGAAGGGGGGENYDD 94
G GG GGG Y D
Sbjct: 378 KHQGGWTDGGSGGGGGYQD 396
Score = 39.7 bits (91), Expect = 0.008
Identities = 23/54 (42%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 39 GGGGGG----GRYYGGGSEGGRAPKRLKTDNAGDQHGGGGGGGGGAGAAGGGGG 88
GGG GG Y G G +GG + + + G HG GGG GG G GG GG
Sbjct: 420 GGGYGGFQTSSSYTGSGYQGGGYQQDNRYQDGG-HHGDRGGGRGGRGGRGGRGG 472
Score = 38.1 bits (87), Expect = 0.023
Identities = 23/51 (45%), Positives = 25/51 (49%), Gaps = 13/51 (25%)
Query: 39 GGGGGGGRYYGGGSEGGRAPKRLKTDNAGDQHGGG---GGGGGGAGAAGGG 86
GG GG G Y GG GGR G++H GG GG GGG G GG
Sbjct: 358 GGRGGRGGYDHGGRGGGR----------GNKHQGGWTDGGSGGGGGYQDGG 398
Score = 36.2 bits (82), Expect = 0.087
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 40 GGGGGGRYYGGGSEGGRAPKRLKTD----NAGDQHGGGGGGGGGAGAAGGGGGG 89
GGG G ++ GG ++GG D ++G Q GG GG G GGG GG
Sbjct: 372 GGGRGNKHQGGWTDGGSGGGGGYQDGGYRDSGFQPGGYHGGHSSGGYQGGGYGG 425
Score = 33.9 bits (76), Expect = 0.43
Identities = 20/54 (37%), Positives = 22/54 (40%), Gaps = 8/54 (14%)
Query: 39 GGGGGGGRYYGGGSEGGRAPKRLKTDNAGDQHGGGGGGGGGAGAAGGGGGGENY 92
G GGGGG GG + G P G HGG GG G GG +Y
Sbjct: 387 GSGGGGGYQDGGYRDSGFQP--------GGYHGGHSSGGYQGGGYGGFQTSSSY 432
Score = 30.8 bits (68), Expect = 3.6
Identities = 21/51 (41%), Positives = 23/51 (45%), Gaps = 15/51 (29%)
Query: 40 GGGGGGRYYGGGSEGGRAPKRLKTDNAGDQHGGGGGGGGGAGAAGGGGGGE 90
GGG GGR G G GGRA G GGG GG G+ GG+
Sbjct: 458 GGGRGGRG-GRGGRGGRA--------------GQGGGWGGRGSQNYHQGGQ 493
Score = 29.6 bits (65), Expect = 8.1
Identities = 22/59 (37%), Positives = 24/59 (40%), Gaps = 9/59 (15%)
Query: 38 AGGGGGG----GRYYGGGSEGGRAPKRLKTDNAGDQHGGGGGGGGGAGAAGGGGGGENY 92
+G GGG RY GG G R R GG GG G G GG G +NY
Sbjct: 435 SGYQGGGYQQDNRYQDGGHHGDRGGGR----GGRGGRGGRGGR-AGQGGGWGGRGSQNY 488
>gi|4507741 twist [Homo sapiens]
Length = 202
Score = 50.4 bits (119), Expect = 4e-06
Identities = 30/84 (35%), Positives = 39/84 (46%), Gaps = 9/84 (10%)
Query: 20 QQPDEQRRRSGAM------VKMAAAGGGGGGGRYYGGGSEGGRAPKRLKTDNAGDQHGGG 73
++PD Q+ SG +AGGG G G GGG GG P G + G
Sbjct: 22 EEPDRQQPPSGKRGGRKRRSSRRSAGGGAGPGGAAGGGVGGGDEPGSPAQGKRGKKSAGC 81
Query: 74 GGGGGGAGAAG---GGGGGENYDD 94
GGGGG G G GGG ++Y++
Sbjct: 82 GGGGGAGGGGGSSSGGGSPQSYEE 105
Score = 31.6 bits (70), Expect = 2.1
Identities = 20/58 (34%), Positives = 23/58 (39%), Gaps = 14/58 (24%)
Query: 51 GSEGGRAPKRLKTDNAGDQHGGGGGGGGGAGAAGGGGGGENYDDPHKTPASPVVHIRG 108
G GGR + + GGG G G A GG GGG+ P SP RG
Sbjct: 32 GKRGGRKRR-------SSRRSAGGGAGPGGAAGGGVGGGDE-------PGSPAQGKRG 75
>gi|154091020 leucine-rich repeats and calponin homology (CH)
domain containing 2 [Homo sapiens]
Length = 765
Score = 50.4 bits (119), Expect = 4e-06
Identities = 30/58 (51%), Positives = 31/58 (53%), Gaps = 17/58 (29%)
Query: 35 MAAAGGGGG---GGRYYGGGSEGGRAPKRLKTDNAGDQHGGGGGGGGGAGAAGGGGGG 89
MAA+ GGGG GG GGGS GG G GGGGGGAG GGGGGG
Sbjct: 1 MAASQGGGGNSGGGGCGGGGSSGG--------------CGTAGGGGGGAGGGGGGGGG 44
>gi|31542255 hypothetical protein LOC140706 [Homo sapiens]
Length = 433
Score = 50.4 bits (119), Expect = 4e-06
Identities = 36/103 (34%), Positives = 46/103 (44%), Gaps = 13/103 (12%)
Query: 10 EKRRRRLEQRQQPD---EQRRRSGAMVKMAAAGGGGGGG--RYYGGGSEGGRAPKRLKTD 64
EKRR +R+ + R G A AGGGGGG R G G +R
Sbjct: 185 EKRRVGTAERRHTICSLDWRMGWGGGAAEARAGGGGGGSLERQRAGARASGSWERRQTFS 244
Query: 65 NAGDQHGGGGGGGGGAGAAG--------GGGGGENYDDPHKTP 99
+ ++ GGGGGGGGAG G G GGG +++ H P
Sbjct: 245 GSWERRHGGGGGGGGAGKPGGSWERRQAGSGGGGSWERRHPGP 287
>gi|89145413 short stature homeobox 2 isoform a [Homo sapiens]
Length = 331
Score = 50.1 bits (118), Expect = 6e-06
Identities = 29/64 (45%), Positives = 31/64 (48%), Gaps = 22/64 (34%)
Query: 28 RSGAMVKMAAAGGGGGGGRYYGGGSEGGRAPKRLKTDNAGDQHGGGGGGGGGAGAAGGGG 87
RS V+ A GGGGGGG GGG GGGGGG GG GA GG G
Sbjct: 51 RSSPAVRAAGGGGGGGGG---GGG-------------------GGGGGGVGGGGAGGGAG 88
Query: 88 GGEN 91
GG +
Sbjct: 89 GGRS 92
Score = 42.7 bits (99), Expect = 0.001
Identities = 21/46 (45%), Positives = 24/46 (52%)
Query: 44 GGRYYGGGSEGGRAPKRLKTDNAGDQHGGGGGGGGGAGAAGGGGGG 89
G + G +E GR + A GGGGGGGGG G GG GGG
Sbjct: 36 GAKEPTGCTEAGRDDRSSPAVRAAGGGGGGGGGGGGGGGGGGVGGG 81
Score = 30.8 bits (68), Expect = 3.6
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 17 EQRQQPDEQRRRSGAMVKMAAAGGGGG---GGRYYGGGSEGGRAPKR 60
+ R P + G GGGGG GG GGG+ GGR+P R
Sbjct: 49 DDRSSPAVRAAGGGGGGGGGGGGGGGGGGVGGGGAGGGAGGGRSPVR 95
>gi|110347449 POU domain, class 4, transcription factor 1 [Homo
sapiens]
Length = 419
Score = 50.1 bits (118), Expect = 6e-06
Identities = 32/79 (40%), Positives = 36/79 (45%), Gaps = 19/79 (24%)
Query: 29 SGAMVKMAAAGGGG----GGGRYYGGGSEGGRAPKRLKTDNAGDQHGGGGGGGGGAGAAG 84
S ++ MA AGG G GGG + G G GG G GGG GGGGG G G
Sbjct: 122 SPSLALMAGAGGAGAAAGGGGAHDGPGGGGG--------PGGGGGPGGGPGGGGGGGPGG 173
Query: 85 GGG-------GGENYDDPH 96
GGG GG + PH
Sbjct: 174 GGGGPGGGLLGGSAHPHPH 192
Score = 45.8 bits (107), Expect = 1e-04
Identities = 32/76 (42%), Positives = 33/76 (43%), Gaps = 18/76 (23%)
Query: 29 SGAMVKMAAAGGGG-----GGGRYYGGGSEGGRAPKRLKTDNAGDQHGGGGGGGGGAGAA 83
+GA AAAGGGG GGG GGG G P GGGGGGG G
Sbjct: 129 AGAGGAGAAAGGGGAHDGPGGGGGPGGGGGPGGGP-------------GGGGGGGPGGGG 175
Query: 84 GGGGGGENYDDPHKTP 99
GG GGG H P
Sbjct: 176 GGPGGGLLGGSAHPHP 191
>gi|73427806 v-maf musculoaponeurotic fibrosarcoma oncogene homolog
isoform b [Homo sapiens]
Length = 373
Score = 49.7 bits (117), Expect = 8e-06
Identities = 36/106 (33%), Positives = 47/106 (44%), Gaps = 25/106 (23%)
Query: 30 GAMVKMAAAGGGGGGGRYYGGGSEGGRAPKRLKTDNAGDQHGGGGGGGGGAGAAGGGG-- 87
GA AA+ GG GG G S GG GGGGGGGGG GAAG GG
Sbjct: 201 GAAGSAAASAGGAGGAGGGGPASAGGG--------------GGGGGGGGGGGAAGAGGAL 246
Query: 88 ------GGENYDDPHKTPASPVVHIRGL---IDGVVEADLVEALQE 124
GG ++DD + +R L + GV + +++ Q+
Sbjct: 247 HPHHAAGGLHFDDRFSDEQLVTMSVRELNRQLRGVSKEEVIRLKQK 292
Score = 37.4 bits (85), Expect = 0.039
Identities = 22/67 (32%), Positives = 24/67 (35%), Gaps = 13/67 (19%)
Query: 36 AAAGGGGGGGRYYG-------------GGSEGGRAPKRLKTDNAGDQHGGGGGGGGGAGA 82
AAA G G Y+ G+ G AG GGG GG G
Sbjct: 170 AAAAQSGAGPHYHHHHHHAAGHHHHPTAGAPGAAGSAAASAGGAGGAGGGGPASAGGGGG 229
Query: 83 AGGGGGG 89
GGGGGG
Sbjct: 230 GGGGGGG 236
Score = 36.2 bits (82), Expect = 0.087
Identities = 28/94 (29%), Positives = 32/94 (34%), Gaps = 38/94 (40%)
Query: 34 KMAAAGGGGGGGRYYGGGSEGGRAPKRLKT--------------------DNAGDQH--- 70
++AAA G G G G G E G A + AG H
Sbjct: 137 QLAAAAGAGAGASLGGSGEEMGPAAAVVSAVIAAAAAQSGAGPHYHHHHHHAAGHHHHPT 196
Query: 71 ---------------GGGGGGGGGAGAAGGGGGG 89
G GG GGGG +AGGGGGG
Sbjct: 197 AGAPGAAGSAAASAGGAGGAGGGGPASAGGGGGG 230
>gi|5453736 v-maf musculoaponeurotic fibrosarcoma oncogene homolog
isoform a [Homo sapiens]
Length = 403
Score = 49.7 bits (117), Expect = 8e-06
Identities = 36/106 (33%), Positives = 47/106 (44%), Gaps = 25/106 (23%)
Query: 30 GAMVKMAAAGGGGGGGRYYGGGSEGGRAPKRLKTDNAGDQHGGGGGGGGGAGAAGGGG-- 87
GA AA+ GG GG G S GG GGGGGGGGG GAAG GG
Sbjct: 201 GAAGSAAASAGGAGGAGGGGPASAGGG--------------GGGGGGGGGGGAAGAGGAL 246
Query: 88 ------GGENYDDPHKTPASPVVHIRGL---IDGVVEADLVEALQE 124
GG ++DD + +R L + GV + +++ Q+
Sbjct: 247 HPHHAAGGLHFDDRFSDEQLVTMSVRELNRQLRGVSKEEVIRLKQK 292
Score = 37.4 bits (85), Expect = 0.039
Identities = 22/67 (32%), Positives = 24/67 (35%), Gaps = 13/67 (19%)
Query: 36 AAAGGGGGGGRYYG-------------GGSEGGRAPKRLKTDNAGDQHGGGGGGGGGAGA 82
AAA G G Y+ G+ G AG GGG GG G
Sbjct: 170 AAAAQSGAGPHYHHHHHHAAGHHHHPTAGAPGAAGSAAASAGGAGGAGGGGPASAGGGGG 229
Query: 83 AGGGGGG 89
GGGGGG
Sbjct: 230 GGGGGGG 236
Score = 36.2 bits (82), Expect = 0.087
Identities = 28/94 (29%), Positives = 32/94 (34%), Gaps = 38/94 (40%)
Query: 34 KMAAAGGGGGGGRYYGGGSEGGRAPKRLKT--------------------DNAGDQH--- 70
++AAA G G G G G E G A + AG H
Sbjct: 137 QLAAAAGAGAGASLGGSGEEMGPAAAVVSAVIAAAAAQSGAGPHYHHHHHHAAGHHHHPT 196
Query: 71 ---------------GGGGGGGGGAGAAGGGGGG 89
G GG GGGG +AGGGGGG
Sbjct: 197 AGAPGAAGSAAASAGGAGGAGGGGPASAGGGGGG 230
>gi|42544153 leukocyte receptor tyrosine kinase isoform 1 precursor
[Homo sapiens]
Length = 864
Score = 49.7 bits (117), Expect = 8e-06
Identities = 37/100 (37%), Positives = 43/100 (43%), Gaps = 16/100 (16%)
Query: 8 RAEKRRRRLEQRQQPDEQRRRSGAMVKMAAAGGGGG---------GGRYYGGGSEGGRAP 58
R + +LE R + R GA AGGGGG GR G+EGG+
Sbjct: 247 RTQASPEKLENRSEAPGSGGRGGA------AGGGGGWTSRAPSPQAGRSLQEGAEGGQGC 300
Query: 59 KRLKTDNAGDQHGGGGGGGGGAGAAGGGGGGENYDDPHKT 98
G GG GGGGGA AGGGGGG D +T
Sbjct: 301 SEAWA-TLGWAAAGGFGGGGGACTAGGGGGGYRGGDASET 339
Score = 37.4 bits (85), Expect = 0.039
Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 11/66 (16%)
Query: 26 RRRSGAMVKMAAAGGGGGGGRYYGGGSEGGR---APKRLKTDNAGDQHGGGGGGGGGAGA 82
R R+G + + A GGGG R Y + GR +P++L +N + G GG G GA
Sbjct: 219 RVRAGELEPLLVAAGGGG--RAYLRPRDRGRTQASPEKL--ENRSEAPGSGGRG----GA 270
Query: 83 AGGGGG 88
AGGGGG
Sbjct: 271 AGGGGG 276
Score = 35.4 bits (80), Expect = 0.15
Identities = 28/84 (33%), Positives = 33/84 (39%), Gaps = 14/84 (16%)
Query: 13 RRRLEQRQQPDEQRRRSGAMVKMAAAGGGGGGGRYYGGGSEGGRAPKRLKTDNAGDQHGG 72
R R + P++ RS A G GG GG GGG RAP + + G
Sbjct: 243 RDRGRTQASPEKLENRS------EAPGSGGRGGAAGGGGGWTSRAPSPQAGRSLQEGAEG 296
Query: 73 GGG--------GGGGAGAAGGGGG 88
G G G AG GGGGG
Sbjct: 297 GQGCSEAWATLGWAAAGGFGGGGG 320
Score = 30.8 bits (68), Expect = 3.6
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 14 RRLEQRQQPDEQRRRSGAMVKMAAAGG--GGGGGRYYGGGSEGGRAPKRLKTDN 65
R L++ + + + A + AAAGG GGGG GGG G R +TDN
Sbjct: 288 RSLQEGAEGGQGCSEAWATLGWAAAGGFGGGGGACTAGGGGGGYRGGDASETDN 341
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.136 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,525,119
Number of Sequences: 37866
Number of extensions: 1921784
Number of successful extensions: 33874
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 571
Number of HSP's that attempted gapping in prelim test: 14737
Number of HSP's gapped (non-prelim): 8751
length of query: 589
length of database: 18,247,518
effective HSP length: 108
effective length of query: 481
effective length of database: 14,157,990
effective search space: 6809993190
effective search space used: 6809993190
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.