CAPNS1 28377

Name: CAPNS1	Sequence: fasta or formatted (268aa)		NCBI GI: 4502565
Description: calpain, small subunit 1		Referenced in: Protein Composition and Structure Cysteine Proteases
Other entries for this name: alt mRNA [268aa] calpain, small subunit 1
Composition: Amino acid Percentage Count Longest homopolymer A alanine 6.3 17 3 C cysteine 1.1 3 1 D aspartate 5.6 15 2 E glutamate 5.6 15 2 F phenylalanine 5.2 14 1 G glycine 19.0 51 20 H histidine 1.5 4 1 I isoleucine 5.6 15 2 K lysine 3.4 9 1 L leucine 8.2 22 1 M methionine 3.7 10 1 N asparagine 5.2 14 2 P proline 2.6 7 4 Q glutamine 3.4 9 1 R arginine 4.9 13 2 S serine 6.3 17 2 T threonine 4.5 12 2 V valine 4.1 11 2 W tryptophan 1.1 3 1 Y tyrosine 2.6 7 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 calpain, small subunit 1 CAPNS1 1.000 calpain, small subunit 1 CAPNS2 0.594 calpain small subunit 2 CAPN3 0.378 calpain 3 isoform f CAPN3 0.378 calpain 3 isoform a CAPN3 0.378 calpain 3 isoform b CAPN3 0.378 calpain 3 isoform d CAPN3 0.376 calpain 3 isoform c CAPN3 0.324 calpain 3 isoform e CAPN3 0.324 calpain 3 isoform e CAPN1 0.313 calpain 1, large subunit CAPN2 0.294 calpain 2 isoform 1 CAPN2 0.294 calpain 2 isoform 2 CAPN9 0.266 calpain 9 isoform 2 CAPN9 0.266 calpain 9 isoform 1 CAPN11 0.249 calpain 11 CAPN8 0.237 calpain 8 SRI 0.154 sorcin isoform a SRI 0.152 sorcin isoform b CAPN13 0.146 calpain 13 GCA 0.139 grancalcin, EF-hand calcium binding protein CAPN12 0.135 calpain 12 PEF1 0.120 penta-EF-hand domain containing 1 CAPN14 0.114 calpain 14 PDCD6 0.102 programmed cell death 6 FAM98B 0.091 family with sequence similarity 98, member B isofor... KRT1 0.080 keratin 1 FBL 0.078 fibrillarin ZIC2 0.078 zinc finger protein of the cerebellum 2 ARID1B 0.074 AT rich interactive domain 1B (SWI1-like) isoform 2 ... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.