Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: PSCA Sequence: fasta or formatted (123aa) NCBI GI: 5031995
Description:

prostate stem cell antigen preproprotein

Referenced in:

Additional Genes in Development
Prostate

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.0         16           3
 C cysteine            8.1         10           2
 D aspartate           4.9          6           2
 E glutamate           2.4          3           1
 F phenylalanine       0.0          0           0
 G glycine             8.1         10           1
 H histidine           0.8          1           1
 I isoleucine          3.3          4           1
 K lysine              4.1          5           2
 L leucine            18.7         23           3
 M methionine          1.6          2           1
 N asparagine          4.1          5           1
 P proline             3.3          4           1
 Q glutamine           6.5          8           1
 R arginine            1.6          2           1
 S serine              4.9          6           1
 T threonine           4.9          6           1
 V valine              5.7          7           1
 W tryptophan          1.6          2           1
 Y tyrosine            2.4          3           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   prostate stem cell antigen preproprotein 
LY6E                  0.153   lymphocyte antigen 6 complex, locus E 
LY6E                  0.153   lymphocyte antigen 6 complex, locus E 
LYPD2                 0.131   LY6/PLAUR domain containing 2 
LYNX1                 0.118   Ly-6 neurotoxin-like protein 1 isoform c 
LYNX1                 0.118   Ly-6 neurotoxin-like protein 1 isoform c 
LYNX1                 0.118   Ly-6 neurotoxin-like protein 1 isoform c 
SLURP1                0.109   ARS component B precursor 
GPIHBP1               0.087   glycosylphosphatidylinositol anchored high density l...
LY6H                  0.083   lymphocyte antigen 6 complex, locus H isoform b [Ho...
LY6H                  0.083   lymphocyte antigen 6 complex, locus H isoform a [Ho...
LY6H                  0.083   lymphocyte antigen 6 complex, locus H isoform b [Ho...
LYPD1                 0.083   LY6/PLAUR domain containing 1 isoform a 
LOC100292543          0.079   PREDICTED: similar to RIKEN cDNA D730001G18 
LOC100288207          0.079   PREDICTED: similar to RIKEN cDNA D730001G18 
LOC100288207          0.079   PREDICTED: hypothetical protein XP_002342921 
ACRV1                 0.066   acrosomal vesicle protein 1 isoform j precursor [Homo...
LY6D                  0.061   lymphocyte antigen 6 complex, locus D 
SPACA4                0.057   sperm acrosomal membrane protein 14 
ACRV1                 0.052   acrosomal vesicle protein 1 isoform c precursor [Homo...
ACRV1                 0.052   acrosomal vesicle protein 1 isoform e precursor [Homo...
ACRV1                 0.052   acrosomal vesicle protein 1 isoform a precursor [Homo...
ACRV1                 0.052   acrosomal vesicle protein 1 isoform f precursor [Homo...
ACRV1                 0.052   acrosomal vesicle protein 1 isoform d precursor [Homo...
ACRV1                 0.052   acrosomal vesicle protein 1 isoform b precursor [Homo...
LY6G6C                0.052   lymphocyte antigen 6 complex G6C 
ACVR1C                0.044   activin A receptor, type IC isoform 4 
ACVR1C                0.044   activin A receptor, type IC isoform 3 
ACVR1C                0.044   activin A receptor, type IC isoform 1 
LYNX1                 0.044   secreted Ly6/uPAR related protein 2 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press