Guide to the Human Genome
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Name: LY6G6C Sequence: fasta or formatted (125aa) NCBI GI: 13376874
Description:

lymphocyte antigen 6 complex G6C

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6          7           1
 C cysteine            8.8         11           2
 D aspartate           2.4          3           1
 E glutamate           3.2          4           2
 F phenylalanine       2.4          3           1
 G glycine             7.2          9           1
 H histidine           2.4          3           1
 I isoleucine          0.8          1           1
 K lysine              4.0          5           1
 L leucine            16.8         21           2
 M methionine          2.4          3           1
 N asparagine          5.6          7           1
 P proline             5.6          7           1
 Q glutamine           4.0          5           2
 R arginine            4.8          6           1
 S serine              5.6          7           1
 T threonine           8.0         10           2
 V valine              5.6          7           1
 W tryptophan          2.4          3           1
 Y tyrosine            2.4          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   lymphocyte antigen 6 complex G6C 
PATE4                 0.069   prostate and testis expressed 4 
PSCA                  0.049   prostate stem cell antigen preproprotein 
C9orf57               0.032   hypothetical protein LOC138240 
LY6G5B                0.028   lymphocyte antigen 6 complex G5B 
PLAUR                 0.024   plasminogen activator, urokinase receptor isoform 3 ...
PLAUR                 0.024   plasminogen activator, urokinase receptor isoform 1 p...
CD59                  0.024   CD59 antigen preproprotein 
CD59                  0.024   CD59 antigen preproprotein 
CD59                  0.024   CD59 antigen preproprotein 
CD59                  0.024   CD59 antigen preproprotein 
CD59                  0.024   CD59 antigen preproprotein 
CD59                  0.024   CD59 antigen preproprotein 
CD59                  0.024   CD59 antigen preproprotein 
CD59                  0.024   CD59 antigen preproprotein 
ZCCHC11               0.020   zinc finger, CCHC domain containing 11 isoform a [Ho...
ZCCHC11               0.020   zinc finger, CCHC domain containing 11 isoform b [Ho...
ZCCHC11               0.020   zinc finger, CCHC domain containing 11 isoform c [Ho...
PATE3                 0.016   prostate and testis expressed 3 
LY6D                  0.012   lymphocyte antigen 6 complex, locus D 
TGFBR1                0.012   transforming growth factor, beta receptor I isoform...
TGFBR1                0.012   transforming growth factor, beta receptor I isoform 1...
GML                   0.012   glycosylphosphatidylinositol anchored molecule like p...
SLURP1                0.008   ARS component B precursor 
LOC100291878          0.008   PREDICTED: similar to RIKEN cDNA C230030N03 
CSMD1                 0.008   CUB and Sushi multiple domains 1 
LYNX1                 0.008   Ly-6 neurotoxin-like protein 1 isoform c 
LYNX1                 0.008   Ly-6 neurotoxin-like protein 1 isoform c 
LYNX1                 0.008   Ly-6 neurotoxin-like protein 1 isoform c 
LYPD2                 0.008   LY6/PLAUR domain containing 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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