Guide to the Human Genome
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Name: SPACA4 Sequence: fasta or formatted (124aa) NCBI GI: 19424138
Description:

sperm acrosomal membrane protein 14

Referenced in:

Testes and Sperm

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.8          6           1
 C cysteine            8.9         11           2
 D aspartate           4.0          5           2
 E glutamate           3.2          4           2
 F phenylalanine       1.6          2           1
 G glycine            12.1         15           1
 H histidine           1.6          2           1
 I isoleucine          0.8          1           1
 K lysine              1.6          2           1
 L leucine            14.5         18           4
 M methionine          4.0          5           1
 N asparagine          2.4          3           1
 P proline             7.3          9           2
 Q glutamine           1.6          2           1
 R arginine            4.0          5           1
 S serine              5.6          7           2
 T threonine          11.3         14           2
 V valine              7.3          9           1
 W tryptophan          0.8          1           1
 Y tyrosine            2.4          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   sperm acrosomal membrane protein 14 
PSCA                  0.053   prostate stem cell antigen preproprotein 
LY6G6D                0.049   lymphocyte antigen 6 complex G6D 
LYPD5                 0.037   LY6/PLAUR domain containing 5 isoform A 
LYPD5                 0.037   LY6/PLAUR domain containing 5 isoform B 
LOC100292543          0.029   PREDICTED: similar to RIKEN cDNA D730001G18 
LOC100288207          0.029   PREDICTED: similar to RIKEN cDNA D730001G18 
LOC100288207          0.029   PREDICTED: hypothetical protein XP_002342921 
C12orf64              0.029   PREDICTED: chromosome 12 open reading frame 64 [Hom...
C12orf64              0.029   PREDICTED: chromosome 12 open reading frame 64 [Hom...
C12orf64              0.029   PREDICTED: hypothetical protein LOC283310 
MUC6                  0.025   mucin 6, gastric 
LYPD2                 0.021   LY6/PLAUR domain containing 2 
MEGF10                0.021   multiple EGF-like-domains 10 
LYPD6                 0.021   LY6/PLAUR domain containing 6 
LOC100292814          0.021   PREDICTED: hypothetical protein 
LOC100290535          0.021   PREDICTED: hypothetical protein XP_002348207 
LOC100288197          0.021   PREDICTED: hypothetical protein XP_002343861 
LOC100288168          0.021   PREDICTED: hypothetical protein XP_002343860 
LYPD3                 0.012   GPI-anchored metastasis-associated protein homolog [...
MEGF6                 0.012   EGF-like-domain, multiple 3 
PODNL1                0.008   podocan-like 1 isoform 3 
PODNL1                0.008   podocan-like 1 isoform 2 
PODNL1                0.008   podocan-like 1 isoform 1 
LRP1                  0.008   low density lipoprotein-related protein 1 
LYNX1                 0.008   Ly-6 neurotoxin-like protein 1 isoform c 
LYNX1                 0.008   Ly-6 neurotoxin-like protein 1 isoform c 
LYNX1                 0.008   Ly-6 neurotoxin-like protein 1 isoform c 
BMPR2                 0.008   bone morphogenetic protein receptor type II precurso...
WNT5B                 0.008   wingless-type MMTV integration site family, member 5...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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