Search of human proteins with 48255941

Search of human proteins with 48255941

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|48255941 CD44 antigen isoform 4 precursor [Homo sapiens]
         (361 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|48255941 CD44 antigen isoform 4 precursor [Homo sapiens]           744   0.0  
gi|48255939 CD44 antigen isoform 3 precursor [Homo sapiens]           468   e-132
gi|48255937 CD44 antigen isoform 2 precursor [Homo sapiens]           468   e-132
gi|48255935 CD44 antigen isoform 1 precursor [Homo sapiens]           468   e-132
gi|48255943 CD44 antigen isoform 5 precursor [Homo sapiens]           165   7e-41
gi|40549451 lymphatic vessel endothelial hyaluronan receptor 1 [...    77   3e-14
gi|26051243 tumor necrosis factor, alpha-induced protein 6 precu...    64   3e-10
gi|61743978 stabilin 1 precursor [Homo sapiens]                        52   6e-07
gi|126090892 aggrecan isoform 2 precursor [Homo sapiens]               44   3e-04
gi|126090883 aggrecan isoform 1 precursor [Homo sapiens]               44   3e-04
gi|187607300 versican isoform 2 [Homo sapiens]                         37   0.036
gi|21361116 versican isoform 1 [Homo sapiens]                          37   0.036
gi|71979937 sialophorin [Homo sapiens]                                 35   0.10 
gi|4507181 sialophorin [Homo sapiens]                                  35   0.10 
gi|38372931 brevican isoform 2 [Homo sapiens]                          35   0.14 
gi|38372935 brevican isoform 1 [Homo sapiens]                          35   0.14 
gi|118600983 chondroitin sulfate proteoglycan 3 [Homo sapiens]         34   0.18 
gi|89001107 dentin sialophosphoprotein preproprotein [Homo sapiens]    33   0.52 
gi|91982772 mucin 17 [Homo sapiens]                                    33   0.52 
gi|16933565 protocadherin 21 precursor [Homo sapiens]                  32   0.88 
gi|21361159 Wilms' tumour 1-associating protein isoform 1 [Homo ...    32   1.2  
gi|116734698 RNA binding motif protein 23 isoform 3 [Homo sapiens]     32   1.2  
gi|116734694 RNA binding motif protein 23 isoform 2 [Homo sapiens]     32   1.2  
gi|169173184 PREDICTED: hypothetical protein [Homo sapiens]            31   2.0  
gi|30102948 hyaluronan and proteoglycan link protein 3 [Homo sap...    30   2.6  
gi|24041035 notch 2 preproprotein [Homo sapiens]                       30   3.4  
gi|193788697 hypothetical protein LOC140688 [Homo sapiens]             29   5.7  
gi|9966883 protocadherin 9 isoform 2 precursor [Homo sapiens]          29   5.7  
gi|119220552 sidekick 1 [Homo sapiens]                                 29   5.7  
gi|45243534 protocadherin 9 isoform 1 precursor [Homo sapiens]         29   5.7  

>gi|48255941 CD44 antigen isoform 4 precursor [Homo sapiens]
          Length = 361

 Score =  744 bits (1922), Expect = 0.0
 Identities = 361/361 (100%), Positives = 361/361 (100%)

Query: 1   MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL 60
           MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL
Sbjct: 1   MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL 60

Query: 61  PTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCFN 120
           PTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCFN
Sbjct: 61  PTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCFN 120

Query: 121 ASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRYVQKGEYRTNPEDIYPSNPTDDDVSS 180
           ASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRYVQKGEYRTNPEDIYPSNPTDDDVSS
Sbjct: 121 ASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRYVQKGEYRTNPEDIYPSNPTDDDVSS 180

Query: 181 GSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATRDQDTFHPSGGSHTTHGS 240
           GSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATRDQDTFHPSGGSHTTHGS
Sbjct: 181 GSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATRDQDTFHPSGGSHTTHGS 240

Query: 241 ESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLALALILAVCIAVNSRRRCGQKKK 300
           ESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLALALILAVCIAVNSRRRCGQKKK
Sbjct: 241 ESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLALALILAVCIAVNSRRRCGQKKK 300

Query: 301 LVINSGNGAVEDRKPSGLNGEASKSQEMVHLVNKESSETPDQFMTADETRNLQNVDMKIG 360
           LVINSGNGAVEDRKPSGLNGEASKSQEMVHLVNKESSETPDQFMTADETRNLQNVDMKIG
Sbjct: 301 LVINSGNGAVEDRKPSGLNGEASKSQEMVHLVNKESSETPDQFMTADETRNLQNVDMKIG 360

Query: 361 V 361
           V
Sbjct: 361 V 361


>gi|48255939 CD44 antigen isoform 3 precursor [Homo sapiens]
          Length = 493

 Score =  468 bits (1205), Expect = e-132
 Identities = 224/229 (97%), Positives = 226/229 (98%), Gaps = 1/229 (0%)

Query: 1   MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL 60
           MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL
Sbjct: 1   MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL 60

Query: 61  PTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCFN 120
           PTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCFN
Sbjct: 61  PTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCFN 120

Query: 121 ASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRYVQKGEYRTNPEDIYPSNPTDDDVSS 180
           ASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRYVQKGEYRTNPEDIYPSNPTDDDVSS
Sbjct: 121 ASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRYVQKGEYRTNPEDIYPSNPTDDDVSS 180

Query: 181 GSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATRDQDTFH 229
           GSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPAT + D+ H
Sbjct: 181 GSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPAT-NMDSSH 228



 Score =  279 bits (714), Expect = 2e-75
 Identities = 138/138 (100%), Positives = 138/138 (100%)

Query: 224 DQDTFHPSGGSHTTHGSESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLALALIL 283
           DQDTFHPSGGSHTTHGSESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLALALIL
Sbjct: 356 DQDTFHPSGGSHTTHGSESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLALALIL 415

Query: 284 AVCIAVNSRRRCGQKKKLVINSGNGAVEDRKPSGLNGEASKSQEMVHLVNKESSETPDQF 343
           AVCIAVNSRRRCGQKKKLVINSGNGAVEDRKPSGLNGEASKSQEMVHLVNKESSETPDQF
Sbjct: 416 AVCIAVNSRRRCGQKKKLVINSGNGAVEDRKPSGLNGEASKSQEMVHLVNKESSETPDQF 475

Query: 344 MTADETRNLQNVDMKIGV 361
           MTADETRNLQNVDMKIGV
Sbjct: 476 MTADETRNLQNVDMKIGV 493


>gi|48255937 CD44 antigen isoform 2 precursor [Homo sapiens]
          Length = 699

 Score =  468 bits (1205), Expect = e-132
 Identities = 228/253 (90%), Positives = 231/253 (91%), Gaps = 1/253 (0%)

Query: 1   MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL 60
           MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL
Sbjct: 1   MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL 60

Query: 61  PTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCFN 120
           PTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCFN
Sbjct: 61  PTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCFN 120

Query: 121 ASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRYVQKGEYRTNPEDIYPSNPTDDDVSS 180
           ASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRYVQKGEYRTNPEDIYPSNPTDDDVSS
Sbjct: 121 ASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRYVQKGEYRTNPEDIYPSNPTDDDVSS 180

Query: 181 GSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPAT-RDQDTFHPSGGSHTTHG 239
           GSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPAT    +T       +  + 
Sbjct: 181 GSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATSTSSNTISAGWEPNEENE 240

Query: 240 SESDGHSHGSQEG 252
            E D H   S  G
Sbjct: 241 DERDRHLSFSGSG 253



 Score =  279 bits (714), Expect = 2e-75
 Identities = 138/138 (100%), Positives = 138/138 (100%)

Query: 224 DQDTFHPSGGSHTTHGSESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLALALIL 283
           DQDTFHPSGGSHTTHGSESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLALALIL
Sbjct: 562 DQDTFHPSGGSHTTHGSESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLALALIL 621

Query: 284 AVCIAVNSRRRCGQKKKLVINSGNGAVEDRKPSGLNGEASKSQEMVHLVNKESSETPDQF 343
           AVCIAVNSRRRCGQKKKLVINSGNGAVEDRKPSGLNGEASKSQEMVHLVNKESSETPDQF
Sbjct: 622 AVCIAVNSRRRCGQKKKLVINSGNGAVEDRKPSGLNGEASKSQEMVHLVNKESSETPDQF 681

Query: 344 MTADETRNLQNVDMKIGV 361
           MTADETRNLQNVDMKIGV
Sbjct: 682 MTADETRNLQNVDMKIGV 699


>gi|48255935 CD44 antigen isoform 1 precursor [Homo sapiens]
          Length = 742

 Score =  468 bits (1203), Expect = e-132
 Identities = 222/222 (100%), Positives = 222/222 (100%)

Query: 1   MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL 60
           MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL
Sbjct: 1   MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL 60

Query: 61  PTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCFN 120
           PTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCFN
Sbjct: 61  PTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCFN 120

Query: 121 ASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRYVQKGEYRTNPEDIYPSNPTDDDVSS 180
           ASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRYVQKGEYRTNPEDIYPSNPTDDDVSS
Sbjct: 121 ASAPPEEDCTSVTDLPNAFDGPITITIVNRDGTRYVQKGEYRTNPEDIYPSNPTDDDVSS 180

Query: 181 GSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPAT 222
           GSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPAT
Sbjct: 181 GSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPAT 222



 Score =  279 bits (714), Expect = 2e-75
 Identities = 138/138 (100%), Positives = 138/138 (100%)

Query: 224 DQDTFHPSGGSHTTHGSESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLALALIL 283
           DQDTFHPSGGSHTTHGSESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLALALIL
Sbjct: 605 DQDTFHPSGGSHTTHGSESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLALALIL 664

Query: 284 AVCIAVNSRRRCGQKKKLVINSGNGAVEDRKPSGLNGEASKSQEMVHLVNKESSETPDQF 343
           AVCIAVNSRRRCGQKKKLVINSGNGAVEDRKPSGLNGEASKSQEMVHLVNKESSETPDQF
Sbjct: 665 AVCIAVNSRRRCGQKKKLVINSGNGAVEDRKPSGLNGEASKSQEMVHLVNKESSETPDQF 724

Query: 344 MTADETRNLQNVDMKIGV 361
           MTADETRNLQNVDMKIGV
Sbjct: 725 MTADETRNLQNVDMKIGV 742


>gi|48255943 CD44 antigen isoform 5 precursor [Homo sapiens]
          Length = 139

 Score =  165 bits (417), Expect = 7e-41
 Identities = 77/77 (100%), Positives = 77/77 (100%)

Query: 1  MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL 60
          MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL
Sbjct: 1  MDKFWWHAAWGLCLVPLSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTL 60

Query: 61 PTMAQMEKALSIGFETC 77
          PTMAQMEKALSIGFETC
Sbjct: 61 PTMAQMEKALSIGFETC 77


>gi|40549451 lymphatic vessel endothelial hyaluronan receptor 1
           [Homo sapiens]
          Length = 322

 Score = 76.6 bits (187), Expect = 3e-14
 Identities = 41/115 (35%), Positives = 59/115 (51%), Gaps = 2/115 (1%)

Query: 17  LSLAQIDLNITCRFAGVFHVEKNGRYSISRTEAADLCKAFNSTLPTMAQMEKALSIGFET 76
           L   ++ + ++CR  G+  V K     ++ TEA + C+    +L    Q+E AL   FET
Sbjct: 25  LRAEELSIQVSCRIMGITLVSKKANQQLNFTEAKEACRLLGLSLAGKDQVETALKASFET 84

Query: 77  CRYGFI-EGHVVIPRIHPNSICAANNTGVYILTSNTS-QYDTYCFNASAPPEEDC 129
           C YG++ +G VVI RI PN  C  N  GV I     S Q+  YC+N+S      C
Sbjct: 85  CSYGWVGDGFVVISRISPNPKCGKNGVGVLIWKVPVSRQFAAYCYNSSDTWTNSC 139


>gi|26051243 tumor necrosis factor, alpha-induced protein 6
           precursor [Homo sapiens]
          Length = 277

 Score = 63.5 bits (153), Expect = 3e-10
 Identities = 40/120 (33%), Positives = 61/120 (50%), Gaps = 9/120 (7%)

Query: 29  RFAGVFHVE-KNGRYSISRTEAADLCKAFNSTLPTMAQMEKALSIGFETCRYGFI-EGHV 86
           R AGV+H E ++G+Y ++  EA  +C+     L T  Q+E A  IGF  C  G++ +G V
Sbjct: 33  RAAGVYHREARSGKYKLTYAEAKAVCEFEGGHLATYKQLEAARKIGFHVCAAGWMAKGRV 92

Query: 87  VIPRIHPNSICAANNTGVY---ILTSNTSQYDTYCFNASAPPEEDCTSV-TDLPNAFDGP 142
             P + P   C    TG+    I  + + ++D YC+N   P  ++C  V TD    F  P
Sbjct: 93  GYPIVKPGPNCGFGKTGIIDYGIRLNRSERWDAYCYN---PHAKECGGVFTDPKQIFKSP 149


>gi|61743978 stabilin 1 precursor [Homo sapiens]
          Length = 2570

 Score = 52.4 bits (124), Expect = 6e-07
 Identities = 30/102 (29%), Positives = 52/102 (50%), Gaps = 5/102 (4%)

Query: 23   DLNITCRFAGVFHVEK-NGRYSISRTEAADLCKAFNSTLPTMAQMEKALSIGFETCRYGF 81
            DL+   + AGVFH++  +G Y ++ +EA   C+A  + L +  Q+  A  +GF  C  G+
Sbjct: 2199 DLHFQEKRAGVFHLQATSGPYGLNFSEAEAACEAQGAVLASFPQLSAAQQLGFHLCLMGW 2258

Query: 82   I-EGHVVIPRIHPNSICAANNTGVYILTSN---TSQYDTYCF 119
            +  G    P + P + C     G+  L +    + ++D YCF
Sbjct: 2259 LANGSTAHPVVFPVADCGNGRVGIVSLGARKNLSERWDAYCF 2300


>gi|126090892 aggrecan isoform 2 precursor [Homo sapiens]
          Length = 2416

 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 7/94 (7%)

Query: 33  VFHVEKNG-RYSISRTEAADLCKAFNSTLPTMAQMEKALSIGFETCRYGFIEGHVV-IPR 90
           VFH      RYS++  EA   C    + + +  Q++ A   G+E C  G++    V  P 
Sbjct: 479 VFHYRPGPTRYSLTFEEAQQACLRTGAVIASPEQLQAAYEAGYEQCDAGWLRDQTVRYPI 538

Query: 91  IHPNSICAANNTG-----VYILTSNTSQYDTYCF 119
           + P + C  +         Y +  +T  YD YCF
Sbjct: 539 VSPRTPCVGDKDSSPGVRTYGVRPSTETYDVYCF 572



 Score = 41.6 bits (96), Expect = 0.001
 Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 14/95 (14%)

Query: 48  EAADLCKAFNSTLPTMAQMEKALSIGFETCRYGFI-EGHVVIPRIHPNSICAANNTG--- 103
           EA + C++ N+TL T  Q+  A S G + C  G++ +G +  P + P   C  +  G   
Sbjct: 593 EALEFCESHNATLATTGQLYAAWSRGLDKCYAGWLADGSLRYPIVTPRPACGGDKPGVRT 652

Query: 104 VYILTSNT------SQYDTYCFN----ASAPPEED 128
           VY+  + T      S++  +CF       +P EE+
Sbjct: 653 VYLYPNQTGLPDPLSRHHAFCFRGISAVPSPGEEE 687



 Score = 35.0 bits (79), Expect = 0.10
 Identities = 25/94 (26%), Positives = 37/94 (39%), Gaps = 7/94 (7%)

Query: 33  VFHVEK-NGRYSISRTEAADLCKAFNSTLPTMAQMEKALSIGFETCRYGFIEGHVVIPRI 91
           VFH    + RY++    A   C   ++ + T  Q++ A   GF  C  G++    V   I
Sbjct: 154 VFHYRAISTRYTLDFDRAQRACLQNSAIIATPEQLQAAYEDGFHQCDAGWLADQTVRYPI 213

Query: 92  H-PNSICAAN-----NTGVYILTSNTSQYDTYCF 119
           H P   C  +         Y +      YD YCF
Sbjct: 214 HTPREGCYGDKDEFPGVRTYGIRDTNETYDVYCF 247


>gi|126090883 aggrecan isoform 1 precursor [Homo sapiens]
          Length = 2317

 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 7/94 (7%)

Query: 33  VFHVEKNG-RYSISRTEAADLCKAFNSTLPTMAQMEKALSIGFETCRYGFIEGHVV-IPR 90
           VFH      RYS++  EA   C    + + +  Q++ A   G+E C  G++    V  P 
Sbjct: 479 VFHYRPGPTRYSLTFEEAQQACLRTGAVIASPEQLQAAYEAGYEQCDAGWLRDQTVRYPI 538

Query: 91  IHPNSICAANNTG-----VYILTSNTSQYDTYCF 119
           + P + C  +         Y +  +T  YD YCF
Sbjct: 539 VSPRTPCVGDKDSSPGVRTYGVRPSTETYDVYCF 572



 Score = 41.6 bits (96), Expect = 0.001
 Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 14/95 (14%)

Query: 48  EAADLCKAFNSTLPTMAQMEKALSIGFETCRYGFI-EGHVVIPRIHPNSICAANNTG--- 103
           EA + C++ N+TL T  Q+  A S G + C  G++ +G +  P + P   C  +  G   
Sbjct: 593 EALEFCESHNATLATTGQLYAAWSRGLDKCYAGWLADGSLRYPIVTPRPACGGDKPGVRT 652

Query: 104 VYILTSNT------SQYDTYCFN----ASAPPEED 128
           VY+  + T      S++  +CF       +P EE+
Sbjct: 653 VYLYPNQTGLPDPLSRHHAFCFRGISAVPSPGEEE 687



 Score = 35.0 bits (79), Expect = 0.10
 Identities = 25/94 (26%), Positives = 37/94 (39%), Gaps = 7/94 (7%)

Query: 33  VFHVEK-NGRYSISRTEAADLCKAFNSTLPTMAQMEKALSIGFETCRYGFIEGHVVIPRI 91
           VFH    + RY++    A   C   ++ + T  Q++ A   GF  C  G++    V   I
Sbjct: 154 VFHYRAISTRYTLDFDRAQRACLQNSAIIATPEQLQAAYEDGFHQCDAGWLADQTVRYPI 213

Query: 92  H-PNSICAAN-----NTGVYILTSNTSQYDTYCF 119
           H P   C  +         Y +      YD YCF
Sbjct: 214 HTPREGCYGDKDEFPGVRTYGIRDTNETYDVYCF 247


>gi|187607300 versican isoform 2 [Homo sapiens]
          Length = 655

 Score = 36.6 bits (83), Expect = 0.036
 Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 18/100 (18%)

Query: 33  VFHVEKNGRYSISRTEAADLCKAFNSTLPTMAQMEKALSIGFETCRYGFIEGHVVIPRIH 92
           VFH+    +++    EAA  C+  ++ L T+ +++ A   GF+ C YG++    V    H
Sbjct: 252 VFHLTVPSKFTFE--EAAKECENQDARLATVGELQAAWRNGFDQCDYGWLSDASV---RH 306

Query: 93  PNSICAANNTG-------VYILTSNT------SQYDTYCF 119
           P ++  A   G       +Y   + T      S++D YCF
Sbjct: 307 PVTVARAQCGGGLLGVRTLYRFENQTGFPPPDSRFDAYCF 346



 Score = 34.3 bits (77), Expect = 0.18
 Identities = 26/94 (27%), Positives = 36/94 (38%), Gaps = 7/94 (7%)

Query: 33  VFHVEK-NGRYSISRTEAADLCKAFNSTLPTMAQMEKALSIGFETCRYGFIEGHVV-IPR 90
           VFH      RY+++   A   C    + + T  Q+  A   GFE C  G++    V  P 
Sbjct: 151 VFHYRAATSRYTLNFEAAQKACLDVGAVIATPEQLFAAYEDGFEQCDAGWLADQTVRYPI 210

Query: 91  IHPNSICAANNTG-----VYILTSNTSQYDTYCF 119
             P   C  +  G      Y   S    YD YC+
Sbjct: 211 RAPRVGCYGDKMGKAGVRTYGFRSPQETYDVYCY 244


>gi|21361116 versican isoform 1 [Homo sapiens]
          Length = 3396

 Score = 36.6 bits (83), Expect = 0.036
 Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 18/100 (18%)

Query: 33  VFHVEKNGRYSISRTEAADLCKAFNSTLPTMAQMEKALSIGFETCRYGFIEGHVVIPRIH 92
           VFH+    +++    EAA  C+  ++ L T+ +++ A   GF+ C YG++    V    H
Sbjct: 252 VFHLTVPSKFTFE--EAAKECENQDARLATVGELQAAWRNGFDQCDYGWLSDASV---RH 306

Query: 93  PNSICAANNTG-------VYILTSNT------SQYDTYCF 119
           P ++  A   G       +Y   + T      S++D YCF
Sbjct: 307 PVTVARAQCGGGLLGVRTLYRFENQTGFPPPDSRFDAYCF 346



 Score = 34.3 bits (77), Expect = 0.18
 Identities = 26/94 (27%), Positives = 36/94 (38%), Gaps = 7/94 (7%)

Query: 33  VFHVEK-NGRYSISRTEAADLCKAFNSTLPTMAQMEKALSIGFETCRYGFIEGHVV-IPR 90
           VFH      RY+++   A   C    + + T  Q+  A   GFE C  G++    V  P 
Sbjct: 151 VFHYRAATSRYTLNFEAAQKACLDVGAVIATPEQLFAAYEDGFEQCDAGWLADQTVRYPI 210

Query: 91  IHPNSICAANNTG-----VYILTSNTSQYDTYCF 119
             P   C  +  G      Y   S    YD YC+
Sbjct: 211 RAPRVGCYGDKMGKAGVRTYGFRSPQETYDVYCY 244


>gi|71979937 sialophorin [Homo sapiens]
          Length = 400

 Score = 35.0 bits (79), Expect = 0.10
 Identities = 49/196 (25%), Positives = 80/196 (40%), Gaps = 20/196 (10%)

Query: 134 DLPNAFDGPITITIVNRDGTRYVQKGEYRTNPEDIYPSNPTDDDVSSGSSSERS-STSGG 192
           + P+A   P      N  G+  V  G   TN  +           ++ SS E S  TSG 
Sbjct: 108 ETPHATSHPAVPITANSLGSHTVTGGTITTNSPETSSRTSGAPVTTAASSLETSRGTSGP 167

Query: 193 YIFYTFSTVHPIPDEDSPWITDSTDRI---------PATRDQDTFHPSGGSHTTHGSESD 243
            +     ++        P +T +TD +         P T    +  PS G+     S   
Sbjct: 168 PLTMATVSLETSKGTSGPPVTMATDSLETSTGTTGPPVTMTTGSLEPSSGASGPQVSSVK 227

Query: 244 GHSHGSQEGGANTTSGPIRTP-QIPEWLIILASLLA-LALILAVCIAVNSRRRCGQKKK- 300
             +  S     N ++ P R P +    ++ +A L+A LA+I+ V + +  RRR  QK++ 
Sbjct: 228 LSTMMSPTTSTNASTVPFRNPDENSRGMLPVAVLVALLAVIVLVALLLLWRRR--QKRRT 285

Query: 301 --LVINSG---NGAVE 311
             LV++ G   NG V+
Sbjct: 286 GALVLSRGGKRNGVVD 301


>gi|4507181 sialophorin [Homo sapiens]
          Length = 400

 Score = 35.0 bits (79), Expect = 0.10
 Identities = 49/196 (25%), Positives = 80/196 (40%), Gaps = 20/196 (10%)

Query: 134 DLPNAFDGPITITIVNRDGTRYVQKGEYRTNPEDIYPSNPTDDDVSSGSSSERS-STSGG 192
           + P+A   P      N  G+  V  G   TN  +           ++ SS E S  TSG 
Sbjct: 108 ETPHATSHPAVPITANSLGSHTVTGGTITTNSPETSSRTSGAPVTTAASSLETSRGTSGP 167

Query: 193 YIFYTFSTVHPIPDEDSPWITDSTDRI---------PATRDQDTFHPSGGSHTTHGSESD 243
            +     ++        P +T +TD +         P T    +  PS G+     S   
Sbjct: 168 PLTMATVSLETSKGTSGPPVTMATDSLETSTGTTGPPVTMTTGSLEPSSGASGPQVSSVK 227

Query: 244 GHSHGSQEGGANTTSGPIRTP-QIPEWLIILASLLA-LALILAVCIAVNSRRRCGQKKK- 300
             +  S     N ++ P R P +    ++ +A L+A LA+I+ V + +  RRR  QK++ 
Sbjct: 228 LSTMMSPTTSTNASTVPFRNPDENSRGMLPVAVLVALLAVIVLVALLLLWRRR--QKRRT 285

Query: 301 --LVINSG---NGAVE 311
             LV++ G   NG V+
Sbjct: 286 GALVLSRGGKRNGVVD 301


>gi|38372931 brevican isoform 2 [Homo sapiens]
          Length = 671

 Score = 34.7 bits (78), Expect = 0.14
 Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 6/89 (6%)

Query: 37  EKNGRYSISRTEAADLCKAFNSTLPTMAQMEKALSIGFETCRYGFIEGHVV-IPRIHPNS 95
           E + RY+ S + A + C    + + T  Q+  A   G+E C  G++    V  P   P  
Sbjct: 163 EGSARYAFSFSGAQEACARIGAHIATPEQLYAAYLGGYEQCDAGWLSDQTVRYPIQTPRE 222

Query: 96  ICAANNTGV-----YILTSNTSQYDTYCF 119
            C  +  G      Y +      YD YC+
Sbjct: 223 ACYGDMDGFPGVRNYGVVDPDDLYDVYCY 251


>gi|38372935 brevican isoform 1 [Homo sapiens]
          Length = 911

 Score = 34.7 bits (78), Expect = 0.14
 Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 6/89 (6%)

Query: 37  EKNGRYSISRTEAADLCKAFNSTLPTMAQMEKALSIGFETCRYGFIEGHVV-IPRIHPNS 95
           E + RY+ S + A + C    + + T  Q+  A   G+E C  G++    V  P   P  
Sbjct: 163 EGSARYAFSFSGAQEACARIGAHIATPEQLYAAYLGGYEQCDAGWLSDQTVRYPIQTPRE 222

Query: 96  ICAANNTGV-----YILTSNTSQYDTYCF 119
            C  +  G      Y +      YD YC+
Sbjct: 223 ACYGDMDGFPGVRNYGVVDPDDLYDVYCY 251


>gi|118600983 chondroitin sulfate proteoglycan 3 [Homo sapiens]
          Length = 1321

 Score = 34.3 bits (77), Expect = 0.18
 Identities = 22/94 (23%), Positives = 39/94 (41%), Gaps = 7/94 (7%)

Query: 33  VFHVEK-NGRYSISRTEAADLCKAFNSTLPTMAQMEKALSIGFETCRYGFIEGHVV-IPR 90
           VFH      RY+++  EA + C+  ++ +     ++ A   GF+ C  G++    V  P 
Sbjct: 161 VFHYRSARDRYALTFAEAQEACRLSSAIIAAPRHLQAAFEDGFDNCDAGWLSDRTVRYPI 220

Query: 91  IHPNSICAANNTGV-----YILTSNTSQYDTYCF 119
                 C  + + +     Y   +    YD YCF
Sbjct: 221 TQSRPGCYGDRSSLPGVRSYGRRNPQELYDVYCF 254



 Score = 32.7 bits (73), Expect = 0.52
 Identities = 28/108 (25%), Positives = 44/108 (40%), Gaps = 18/108 (16%)

Query: 33  VFHVEKNGRYSISRTEAADLCKAFNSTLPTMAQMEKALSIGFETCRYGFI-EGHVVIPRI 91
           VF+V    R +++   A   C+   + L ++ Q+  A   G + C  G++ +G V  P  
Sbjct: 262 VFYVGPARRLTLAGARAQ--CRRQGAALASVGQLHLAWHEGLDQCDPGWLADGSVRYPIQ 319

Query: 92  HPNSICA------------ANNTGVYILTSNTSQYDTYCFNASAPPEE 127
            P   C             AN TG     S   ++D YCF A  P  +
Sbjct: 320 TPRRRCGGPAPGVRTVYRFANRTG---FPSPAERFDAYCFRAHHPTSQ 364


>gi|89001107 dentin sialophosphoprotein preproprotein [Homo sapiens]
          Length = 1301

 Score = 32.7 bits (73), Expect = 0.52
 Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 17/87 (19%)

Query: 163  TNPEDIYPSNPTDDDVSSGSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPAT 222
            ++  D   SN + D   S  SS+ S++S                 DS   +DS+D    +
Sbjct: 1223 SDSSDSSDSNESSDSSDSSDSSDSSNSS-----------------DSSDSSDSSDSTSDS 1265

Query: 223  RDQDTFHPSGGSHTTHGSESDGHSHGS 249
             D+       G+   +GS+SD  S GS
Sbjct: 1266 NDESDSQSKSGNGNNNGSDSDSDSEGS 1292



 Score = 30.8 bits (68), Expect = 2.0
 Identities = 30/154 (19%), Positives = 65/154 (42%), Gaps = 7/154 (4%)

Query: 108 TSNTSQYDTYCFNASAPPEE----DCTSVTDLPNAFDGPITITIVNRDGTRYVQKGEYRT 163
           +SN++  D+   N+S   +     D +  +D  N+ D   +    N   +         +
Sbjct: 718 SSNSNSSDSDSSNSSDSSDSSNSSDSSDSSDSSNSSDSSDSSDSSNSSDS---SDSSDSS 774

Query: 164 NPEDIYPSNPTDDDVSSGSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATR 223
           +  D   S+ ++D  +S  SS+ S++S        S      D DS   +DS++   ++ 
Sbjct: 775 DSSDSSNSSDSNDSSNSSDSSDSSNSSDSSNSSDSSDSSDSSDSDSSNSSDSSNSSDSSD 834

Query: 224 DQDTFHPSGGSHTTHGSESDGHSHGSQEGGANTT 257
             ++   S  S ++ GS+SD  +       ++++
Sbjct: 835 SSNSSDSSDSSDSSDGSDSDSSNRSDSSNSSDSS 868



 Score = 30.4 bits (67), Expect = 2.6
 Identities = 21/97 (21%), Positives = 42/97 (43%)

Query: 162 RTNPEDIYPSNPTDDDVSSGSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPA 221
           R++  +   S+ + D  +S  SS+ S ++        S      D DS   ++S+D   +
Sbjct: 858 RSDSSNSSDSSDSSDSSNSSDSSDSSDSNESSNSSDSSDSSNSSDSDSSDSSNSSDSSDS 917

Query: 222 TRDQDTFHPSGGSHTTHGSESDGHSHGSQEGGANTTS 258
           +   D+   S  S  ++ S+S   S  S    ++ +S
Sbjct: 918 SNSSDSSESSNSSDNSNSSDSSNSSDSSDSSDSSNSS 954



 Score = 30.0 bits (66), Expect = 3.4
 Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 12/93 (12%)

Query: 163 TNPEDIYPSNPTDDDVSSGSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPAT 222
           +N  D   S+ + D  +S  SS+ S +S G             D DS   +DS++   ++
Sbjct: 821 SNSSDSSNSSDSSDSSNSSDSSDSSDSSDG------------SDSDSSNRSDSSNSSDSS 868

Query: 223 RDQDTFHPSGGSHTTHGSESDGHSHGSQEGGAN 255
              D+ + S  S ++  +ES   S  S    ++
Sbjct: 869 DSSDSSNSSDSSDSSDSNESSNSSDSSDSSNSS 901



 Score = 29.6 bits (65), Expect = 4.4
 Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 15/88 (17%)

Query: 171 SNPTDDDVSSGSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATRDQDTFHP 230
           S+ +D D S  S S  S++S               D DS   +DS+D   ++   D+   
Sbjct: 705 SDSSDSDSSDSSDSSNSNSS---------------DSDSSNSSDSSDSSNSSDSSDSSDS 749

Query: 231 SGGSHTTHGSESDGHSHGSQEGGANTTS 258
           S  S ++  S+S   S  S    ++ +S
Sbjct: 750 SNSSDSSDSSDSSNSSDSSDSSDSSDSS 777


>gi|91982772 mucin 17 [Homo sapiens]
          Length = 4493

 Score = 32.7 bits (73), Expect = 0.52
 Identities = 53/219 (24%), Positives = 81/219 (36%), Gaps = 24/219 (10%)

Query: 58  STLPTMAQMEKALSIGFETCRYGFIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTY 117
           S+LPT A+    L+           EG   +  +  ++I  A++      T++T   D+ 
Sbjct: 372 SSLPTTAEATSMLTSTLS-------EGSTPLTNMPVSTILVASSEAS---TTSTIPVDSK 421

Query: 118 CF-----NASAPPE--EDCTSVTDLPNAFDGPITITIVNRDGTRYVQKGEYRTNPEDIYP 170
            F      AS+ P   ED +  T  P+    P+T   V+       +     T P D   
Sbjct: 422 TFVTTASEASSSPTTAEDTSIATSTPSEGSTPLTSMPVSTTPVASSEASNLSTTPVDSKT 481

Query: 171 SNPTDDDVSSG------SSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATRD 224
              T  + SS       +S   S+ S G    T  +V  +P   S   T ST  +  +  
Sbjct: 482 QVTTSTEASSSPPTAEVNSMPTSTPSEGSTPLTSMSVSTMPVASSEASTLSTTPVDTSTP 541

Query: 225 QDTFHPSGGSHTTHGSESDGHSHGSQEGGANTTSGPIRT 263
             T   +  S TT    S   S  S EG    T+ P+ T
Sbjct: 542 VTTSSEASSSSTTPEGTSIPTSTPS-EGSTPLTNMPVST 579



 Score = 29.6 bits (65), Expect = 4.4
 Identities = 40/152 (26%), Positives = 59/152 (38%), Gaps = 25/152 (16%)

Query: 121  ASAPPEEDCTSV-TDLPNAFDGPITITIVNRDGTRYVQKGEYRTNPEDIYPSNPTDDDVS 179
            +S+P   + TS+ T  P+    P+T   VN       + G   T P D      T   V+
Sbjct: 2789 SSSPTTAEVTSMPTSTPSETSTPLTSMPVNHTPVASSEAGTLSTTPVD------TSTPVT 2842

Query: 180  SGSSSERSSTSGGYIFYTFST-------VHPIPDEDSPWITDSTDRIPATRDQDTFHPSG 232
            + + +  S T+   I    ST       +  IP   +P +  S     +T   DT  P  
Sbjct: 2843 TSTKASSSPTTAEGIVVPISTASEGSTLLTSIPVSTTP-VASSEASTLSTTPVDTSIPV- 2900

Query: 233  GSHTTHGSESDGHSHGSQEGGANTTSGPIRTP 264
             + +T GS S   + G        TS PI TP
Sbjct: 2901 -TTSTEGSSSPTTAEG--------TSMPISTP 2923


>gi|16933565 protocadherin 21 precursor [Homo sapiens]
          Length = 859

 Score = 32.0 bits (71), Expect = 0.88
 Identities = 39/188 (20%), Positives = 68/188 (36%), Gaps = 23/188 (12%)

Query: 143 ITITIVNRDGTRYVQKGEYRTNPEDIYPSNPTDDDVSSGSSSERSSTSGGYIFYTFSTVH 202
           I +T  N +  R++Q+      PEDI    P    +    + +R + SGG + Y    +H
Sbjct: 123 ILVTDANDEAPRFIQEPYVALVPEDI----PAGSIIFKVHAVDRDTGSGGSVTYFLQNLH 178

Query: 203 PIPDEDSPWITDSTD---RIPATRDQDTFHPSGGSHTTHGSESDGHSHGSQEGGANTTSG 259
                 SP+  D      R+ A    D         T    +  G  HG+    + TT+ 
Sbjct: 179 ------SPFAVDRHSGVLRLQAGATLDYERSRTHYITVVAKDGGGRLHGADVVFSATTTV 232

Query: 260 PIRTPQI----------PEWLIILASLLALALILAVCIAVNSRRRCGQKKKLVINSGNGA 309
            +    +          P +  +    L  + +L V      R +  +    ++N  +GA
Sbjct: 233 TVNVEDVQDMAPVFVGTPYYGYVYEDTLPGSEVLKVVAMDGDRGKPNRILYSLVNGNDGA 292

Query: 310 VEDRKPSG 317
            E  + SG
Sbjct: 293 FEINETSG 300


>gi|21361159 Wilms' tumour 1-associating protein isoform 1 [Homo
           sapiens]
          Length = 396

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 6/89 (6%)

Query: 109 SNTSQYDTYCFNASAPPEEDCTSVTDLPNAFDGPITITIVNR--DGTRYVQKGEYRTNPE 166
           S  S   T    AS P E+   +  D     +GP   +   +   G+ + ++G      E
Sbjct: 244 SQASAPSTSRTTASEPVEQSEATSKDCSRLTNGPSNGSSSRQRTSGSGFHREGN---TTE 300

Query: 167 DIYPSNPTDDDVSSGSSSERSSTSG-GYI 194
           D +PS+P + + SS SS ER+   G GY+
Sbjct: 301 DDFPSSPGNGNKSSNSSEERTGRGGSGYV 329


>gi|116734698 RNA binding motif protein 23 isoform 3 [Homo sapiens]
          Length = 405

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 29/95 (30%), Positives = 39/95 (41%), Gaps = 11/95 (11%)

Query: 169 YPSNPTDDDVSSGSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATRDQDTF 228
           YPSN T    +SG+ +  SST G        T +   D D     +S  R P  + +   
Sbjct: 34  YPSNTTSSTSNSGNETSGSSTIG-------ETSNRSRDRDRYRRRNSRSRSPGRQCR--- 83

Query: 229 HPSGGSHTTHGSESDGHSHGSQEGGANTTSGPIRT 263
           H S      HGSES    H  +E   +  S P+ T
Sbjct: 84  HRSRSWDRRHGSESRSRDH-RREDRVHYRSPPLAT 117


>gi|116734694 RNA binding motif protein 23 isoform 2 [Homo sapiens]
          Length = 423

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 29/95 (30%), Positives = 39/95 (41%), Gaps = 11/95 (11%)

Query: 169 YPSNPTDDDVSSGSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATRDQDTF 228
           YPSN T    +SG+ +  SST G        T +   D D     +S  R P  + +   
Sbjct: 34  YPSNTTSSTSNSGNETSGSSTIG-------ETSNRSRDRDRYRRRNSRSRSPGRQCR--- 83

Query: 229 HPSGGSHTTHGSESDGHSHGSQEGGANTTSGPIRT 263
           H S      HGSES    H  +E   +  S P+ T
Sbjct: 84  HRSRSWDRRHGSESRSRDH-RREDRVHYRSPPLAT 117


>gi|169173184 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 1230

 Score = 30.8 bits (68), Expect = 2.0
 Identities = 31/118 (26%), Positives = 46/118 (38%), Gaps = 4/118 (3%)

Query: 169 YPSNPTDDDVSSGSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATRDQDTF 228
           + S P+D   SS  S  R+ST     + +FS        DS W + S   +  T D    
Sbjct: 301 WASAPSDSG-SSSPSVSRASTLSVSGWASFSASGASAPSDSGWTSHSASGVSTTSDSGWA 359

Query: 229 HPSGGSHTTHGSESDGHSHGSQEGGANTTSGPIRTPQIPEWLIILASLLALALILAVC 286
            PS    +T  S   G +  S    + + SG   TP    W    AS  ++    ++C
Sbjct: 360 SPSASGAST--SSDSGWASPSASWASPSASG-ASTPSDSGWASPSASGASMPSAPSLC 414


>gi|30102948 hyaluronan and proteoglycan link protein 3 [Homo
           sapiens]
          Length = 360

 Score = 30.4 bits (67), Expect = 2.6
 Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 6/87 (6%)

Query: 39  NGRYSISRTEAADLCKAFNSTLPTMAQMEKALSIGFETCRYGFIEGHVV-IPRIHPNSIC 97
           NGRY  +  E   +C    + + +  Q+ +A   G + C  G+++   V  P + P   C
Sbjct: 174 NGRYQFNFHEGQQVCAEQAAVVASFEQLFRAWEEGLDWCNAGWLQDATVQYPIMLPRQPC 233

Query: 98  AANNTGVYILT-----SNTSQYDTYCF 119
                   + +         +YD +CF
Sbjct: 234 GGPGLAPGVRSYGPRHRRLHRYDVFCF 260


>gi|24041035 notch 2 preproprotein [Homo sapiens]
          Length = 2471

 Score = 30.0 bits (66), Expect = 3.4
 Identities = 15/66 (22%), Positives = 29/66 (43%)

Query: 169  YPSNPTDDDVSSGSSSERSSTSGGYIFYTFSTVHPIPDEDSPWITDSTDRIPATRDQDTF 228
            YP+ P+    +S +++ER+ +  G++      + P P+    W + S        D  T 
Sbjct: 2383 YPTPPSQHSYASSNAAERTPSHSGHLQGEHPYLTPSPESPDQWSSSSPHSASDWSDVTTS 2442

Query: 229  HPSGGS 234
               GG+
Sbjct: 2443 PTPGGA 2448


>gi|193788697 hypothetical protein LOC140688 [Homo sapiens]
          Length = 436

 Score = 29.3 bits (64), Expect = 5.7
 Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 20/77 (25%)

Query: 208 DSPWITDSTDRIPATR-DQDTFHPSGGSHTTH------------------GSESDGHSHG 248
           DS  IT ST  +PA+   QD  + +GG + ++                  G+ S+G +  
Sbjct: 309 DSAAITHSTYSLPASSYSQDPVYANGGLNYSYRGYGALSSNLQPPASLQTGNHSNGPTDL 368

Query: 249 SQEGGANTTS-GPIRTP 264
           S +GGA+TTS  P  TP
Sbjct: 369 SMKGGASTTSTTPTPTP 385


>gi|9966883 protocadherin 9 isoform 2 precursor [Homo sapiens]
          Length = 1203

 Score = 29.3 bits (64), Expect = 5.7
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 99  ANNTGVYILTSNTSQYDTYCFNASAPPEEDC---TSVTDLPNAFDGPITITIVNRD 151
           +++TG    TSN    +  C  AS   E +C     V  LPN F   I I I+ +D
Sbjct: 79  SSSTGEIFTTSNRIDREKLCAGASYAEENECFFELEVVILPNDFFRLIKIKIIVKD 134


>gi|119220552 sidekick 1 [Homo sapiens]
          Length = 2213

 Score = 29.3 bits (64), Expect = 5.7
 Identities = 39/142 (27%), Positives = 56/142 (39%), Gaps = 10/142 (7%)

Query: 81  FIEGHVVIPRIHPNSICAANNTGVYILTSNTSQYDTYCFNA--SAPPEEDCTSVTDLPNA 138
           F EGH +IP    N I       + IL + TS    Y   A      E   +    L  A
Sbjct: 226 FREGHKIIPS---NRIAITLENQLVILATTTSDAGAYYVQAVNEKNGENKTSPFIHLSIA 282

Query: 139 FD--GPITI--TIVNRDGTRYVQKGEYRTNPEDIYPSNPTDDDVSSGSSSERSSTSGGYI 194
            D   P T+  TIV   G R V  G   T  E I  + P +D   +   +    TSG + 
Sbjct: 283 RDVGTPETMAPTIVVPPGNRSVVAGSSETTLECIASARPVEDLSVTWKRNGVRITSGLHS 342

Query: 195 FYTFSTV-HPIPDEDSPWITDS 215
           F    T+ +P   +  P++ ++
Sbjct: 343 FGRRLTISNPTSADTGPYVCEA 364


>gi|45243534 protocadherin 9 isoform 1 precursor [Homo sapiens]
          Length = 1237

 Score = 29.3 bits (64), Expect = 5.7
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 99  ANNTGVYILTSNTSQYDTYCFNASAPPEEDC---TSVTDLPNAFDGPITITIVNRD 151
           +++TG    TSN    +  C  AS   E +C     V  LPN F   I I I+ +D
Sbjct: 79  SSSTGEIFTTSNRIDREKLCAGASYAEENECFFELEVVILPNDFFRLIKIKIIVKD 134


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.315    0.131    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,696,831
Number of Sequences: 37866
Number of extensions: 692259
Number of successful extensions: 2374
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 2293
Number of HSP's gapped (non-prelim): 110
length of query: 361
length of database: 18,247,518
effective HSP length: 104
effective length of query: 257
effective length of database: 14,309,454
effective search space: 3677529678
effective search space used: 3677529678
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.